Wall clock time and date at job start Tue Mar 31 2020 14:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.52722 * 2 1 4 4 C 1.53192 * 109.49393 * 120.07781 * 2 1 3 5 5 N 1.46925 * 108.77516 * 174.58347 * 4 2 1 6 6 C 1.34771 * 120.62918 * 126.36894 * 5 4 2 7 7 O 1.21633 * 120.00398 * 352.77269 * 6 5 4 8 8 C 1.47257 * 119.99913 * 172.76991 * 6 5 4 9 9 C 1.36251 * 126.16199 * 172.70783 * 8 6 5 10 10 N 1.36345 * 106.88348 * 179.84736 * 9 8 6 11 11 C 1.46499 * 126.19896 * 180.15691 * 10 9 8 12 12 C 1.36167 * 107.60078 * 0.41923 * 10 9 8 13 13 O 1.35462 * 125.55337 * 179.73829 * 12 10 9 14 14 N 1.30699 * 108.89972 * 359.73949 * 12 10 9 15 15 C 1.46928 * 118.74014 * 306.39411 * 5 4 2 16 16 C 1.53193 * 108.77458 * 53.60547 * 15 5 4 17 17 C 1.53032 * 109.49505 * 239.91273 * 2 1 3 18 18 H 1.09000 * 109.45535 * 298.70232 * 17 2 1 19 19 C 1.52998 * 109.46268 * 58.66838 * 17 2 1 20 20 N 1.46496 * 109.47607 * 185.06296 * 19 17 2 21 21 C 1.36942 * 120.00175 * 180.27175 * 20 19 17 22 22 H 1.07996 * 119.99982 * 359.73174 * 21 20 19 23 23 C 1.38811 * 119.99694 * 179.72641 * 21 20 19 24 24 N 1.31619 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99728 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47363 * 90.00140 * 25 23 21 27 27 H 1.48498 * 109.47226 * 210.00145 * 25 23 21 28 28 H 1.48506 * 109.47435 * 330.00209 * 25 23 21 29 29 H 1.08989 * 109.47577 * 180.08579 * 1 2 3 30 30 H 1.09005 * 109.46835 * 300.08728 * 1 2 3 31 31 H 1.09002 * 109.46642 * 60.07806 * 1 2 3 32 32 H 1.09000 * 109.58949 * 54.79978 * 4 2 1 33 33 H 1.08998 * 109.70471 * 294.43969 * 4 2 1 34 34 H 1.07999 * 126.55810 * 359.97438 * 9 8 6 35 35 H 1.08995 * 109.47311 * 270.28550 * 11 10 9 36 36 H 1.09004 * 109.47235 * 30.28829 * 11 10 9 37 37 H 1.09002 * 109.47242 * 150.28569 * 11 10 9 38 38 H 0.96698 * 113.99564 * 270.02868 * 13 12 10 39 39 H 1.09004 * 109.58415 * 293.81846 * 15 5 4 40 40 H 1.08998 * 109.58539 * 173.39781 * 15 5 4 41 41 H 1.09002 * 109.49755 * 185.41566 * 16 15 5 42 42 H 1.08997 * 109.52368 * 65.33170 * 16 15 5 43 43 H 1.08999 * 109.47237 * 65.06321 * 19 17 2 44 44 H 1.08999 * 109.46903 * 305.07004 * 19 17 2 45 45 H 0.96998 * 120.00149 * 0.02562 * 20 19 17 46 46 H 0.96996 * 119.99671 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5045 -0.8292 1.1697 6 6 4.2810 -0.3856 2.1780 7 8 3.7840 0.2249 3.1052 8 6 5.7313 -0.6402 2.1572 9 6 6.6487 -0.1355 3.0291 10 7 7.8643 -0.6241 2.6516 11 6 9.1473 -0.3506 3.3038 12 6 7.6706 -1.4077 1.5549 13 8 8.6399 -2.0702 0.8791 14 7 6.3973 -1.4167 1.2606 15 6 4.1053 -1.4268 -0.0306 16 6 3.5708 -0.6952 -1.2659 17 6 2.0408 -0.7232 -1.2482 18 1 1.6966 -1.7574 -1.2349 19 6 1.5038 -0.0234 -2.4983 20 7 1.8918 -0.7842 -3.6886 21 6 1.5253 -0.3437 -4.9324 22 1 0.9466 0.5622 -5.0355 23 6 1.8979 -1.0616 -6.0605 24 7 2.6029 -2.1659 -5.9348 25 14 1.3986 -0.4603 -7.7572 26 1 2.4485 0.4442 -8.2906 27 1 1.2380 -1.6229 -8.6669 28 1 0.1123 0.2758 -7.6629 29 1 -0.3634 -1.0275 0.0015 30 1 -0.3633 0.5152 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7215 1.2981 33 1 1.7637 -0.1600 2.1402 34 1 6.4506 0.5236 3.8613 35 1 9.6004 0.5345 2.8574 36 1 8.9845 -0.1781 4.3678 37 1 9.8115 -1.2047 3.1718 38 1 9.0374 -1.5596 0.1605 39 1 3.8374 -2.4820 -0.0865 40 1 5.1895 -1.3248 0.0140 41 1 3.9334 -1.1899 -2.1670 42 1 3.9159 0.3387 -1.2546 43 1 1.9195 0.9824 -2.5586 44 1 0.4168 0.0355 -2.4431 45 1 2.4113 -1.5981 -3.5960 46 1 2.8629 -2.6677 -6.7231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185086722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:20 Heat of formation + Delta-G solvation = 10.777084 kcal Electronic energy + Delta-G solvation = -27724.324417 eV Core-core repulsion = 23844.282815 eV Total energy + Delta-G solvation = -3880.041602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52663 -39.89161 -37.92500 -37.47114 -34.99569 -34.50835 -33.29367 -31.80664 -30.17891 -29.47408 -28.05899 -26.70865 -26.30973 -23.92679 -22.90424 -22.11719 -21.76417 -21.12547 -19.96342 -19.27322 -18.46784 -17.33238 -17.04442 -16.69965 -15.93788 -15.77995 -15.14739 -14.75464 -14.73884 -14.61742 -14.27972 -13.85254 -13.75801 -13.41315 -13.31074 -13.26155 -12.85125 -12.80319 -12.44962 -12.37097 -12.24747 -11.76450 -11.61177 -11.46353 -10.91719 -10.80926 -10.68401 -10.56986 -10.27069 -10.21252 -10.12173 -10.04169 -9.90611 -9.53631 -9.30309 -8.86382 -8.77871 -8.33232 -6.82164 -5.69836 -2.97234 1.26179 1.80356 2.06721 3.04055 3.41928 3.47349 3.50179 3.52464 3.54180 4.21011 4.29357 4.57197 4.64802 4.71131 4.86965 5.01110 5.08068 5.14184 5.22974 5.43487 5.50996 5.60388 5.61811 5.64939 5.79306 5.83475 5.95787 5.99167 6.07276 6.14563 6.16275 6.20790 6.35141 6.40838 6.45560 6.57834 6.65138 6.72173 6.83743 6.97913 7.07277 7.21269 7.34490 7.61964 7.76440 8.26835 8.49770 9.60576 10.20686 10.55425 11.53229 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.003102 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.574390 B = 9023.452838 C =10675.096447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.602 3.398 7 O -0.553 6.553 8 C -0.040 4.040 9 C 0.041 3.959 10 N -0.465 5.465 11 C 0.068 3.932 12 C 0.379 3.621 13 O -0.440 6.440 14 N -0.446 5.446 15 C 0.082 3.918 16 C -0.123 4.123 17 C -0.090 4.090 18 H 0.071 0.929 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.195 0.805 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.405 0.595 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.015 0.985 44 H 0.023 0.977 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.951 3.634 21.322 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.390 3.610 7 O -0.432 6.432 8 C -0.168 4.168 9 C -0.096 4.096 10 N -0.159 5.159 11 C -0.075 4.075 12 C 0.079 3.921 13 O -0.240 6.240 14 N -0.177 5.177 15 C -0.040 4.040 16 C -0.161 4.161 17 C -0.109 4.109 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.212 0.788 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.041 0.959 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.338 3.103 21.390 24.887 hybrid contribution 0.630 0.680 -0.883 1.280 sum 12.968 3.783 20.507 24.556 Atomic orbital electron populations 1.21831 0.94532 1.02112 1.01931 1.21439 0.95929 0.99903 0.94295 0.90974 1.21730 0.78797 1.00816 0.99176 1.47930 1.06629 1.59325 1.18194 1.16857 0.83630 0.78460 0.82089 1.90768 1.74129 1.42160 1.36152 1.20431 0.94652 1.03916 0.97796 1.22609 0.82715 1.01883 1.02384 1.45871 1.08720 1.36482 1.24872 1.22153 0.82695 1.03498 0.99119 1.20598 0.87637 0.95159 0.88693 1.84894 1.50229 1.39767 1.49155 1.70820 1.01377 1.20854 1.24626 1.22713 1.02244 0.96451 0.82640 1.21924 0.95528 1.00867 0.97788 1.21357 0.95231 1.00004 0.94302 0.91097 1.20756 0.96538 0.94001 0.85778 1.42392 1.65559 1.28819 1.00818 1.19236 1.27431 1.06089 0.83884 0.91349 1.24716 1.01114 0.97606 0.97712 1.69659 1.42937 1.17312 1.28402 0.86211 0.77999 0.77422 0.84703 1.21850 1.21840 1.20854 0.92552 0.93060 0.91399 0.91510 0.89287 0.78796 0.90030 0.89005 0.88844 0.73793 0.91906 0.84846 0.89597 0.92332 0.96707 0.95923 0.78264 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.82 37.16 0.33 -1.59 16 2 C -0.10 -1.39 2.41 -90.50 -0.22 -1.61 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.65 5.73 -3.71 -0.02 1.62 16 5 N -0.59 -8.86 2.97 -174.10 -0.52 -9.38 16 6 C 0.60 9.22 7.67 -12.60 -0.10 9.13 16 7 O -0.55 -9.40 16.31 5.25 0.09 -9.31 16 8 C -0.04 -0.52 6.65 -83.05 -0.55 -1.07 16 9 C 0.04 0.40 11.30 -16.26 -0.18 0.22 16 10 N -0.46 -3.70 3.16 -125.77 -0.40 -4.10 16 11 C 0.07 0.22 11.11 59.85 0.66 0.88 16 12 C 0.38 3.91 9.03 -89.17 -0.81 3.11 16 13 O -0.44 -3.53 13.55 -18.08 -0.24 -3.78 16 14 N -0.45 -5.88 7.79 -11.21 -0.09 -5.97 16 15 C 0.08 1.24 6.09 -3.71 -0.02 1.21 16 16 C -0.12 -2.07 5.25 -26.61 -0.14 -2.21 16 17 C -0.09 -1.53 1.73 -90.58 -0.16 -1.69 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.16 3.25 5.41 -4.05 -0.02 3.23 16 20 N -0.73 -18.85 5.32 -59.91 -0.32 -19.16 16 21 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.06 0.72 8.14 -51.94 -0.42 0.30 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 34 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.40 1.30 9.06 45.56 0.41 1.71 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.13 2.02 4.11 -61.30 -0.25 1.77 16 41 H 0.09 1.63 7.15 -51.93 -0.37 1.25 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 45 H 0.38 10.31 6.85 -40.82 -0.28 10.03 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -36.14 370.07 -7.79 -43.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.12 Total: 8.45 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.47 Total: 3.81 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.60 Total: -66.42 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.16 Total: -13.09 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.14 -7.79 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.711 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds