Wall clock time and date at job start Tue Mar 31 2020 14:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.52722 * 2 1 4 4 C 1.53192 * 109.49393 * 120.07781 * 2 1 3 5 5 N 1.46925 * 108.77516 * 174.58347 * 4 2 1 6 6 C 1.34771 * 120.62918 * 126.36894 * 5 4 2 7 7 O 1.21633 * 120.00398 * 352.77269 * 6 5 4 8 8 C 1.47257 * 119.99913 * 172.76991 * 6 5 4 9 9 C 1.36251 * 126.16199 * 172.70783 * 8 6 5 10 10 N 1.36345 * 106.88348 * 179.84736 * 9 8 6 11 11 C 1.46499 * 126.19896 * 180.15691 * 10 9 8 12 12 C 1.36167 * 107.60078 * 0.41923 * 10 9 8 13 13 O 1.35462 * 125.55337 * 179.73829 * 12 10 9 14 14 N 1.30699 * 108.89972 * 359.73949 * 12 10 9 15 15 C 1.46928 * 118.74014 * 306.39411 * 5 4 2 16 16 C 1.53193 * 108.77458 * 53.60547 * 15 5 4 17 17 C 1.53032 * 109.49505 * 239.91273 * 2 1 3 18 18 H 1.09000 * 109.45535 * 298.70232 * 17 2 1 19 19 C 1.52998 * 109.46268 * 58.66838 * 17 2 1 20 20 N 1.46496 * 109.47607 * 185.06296 * 19 17 2 21 21 C 1.36942 * 120.00175 * 180.27175 * 20 19 17 22 22 H 1.07996 * 119.99982 * 359.73174 * 21 20 19 23 23 C 1.38811 * 119.99694 * 179.72641 * 21 20 19 24 24 N 1.31619 * 120.00337 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99728 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47363 * 90.00140 * 25 23 21 27 27 H 1.48498 * 109.47226 * 210.00145 * 25 23 21 28 28 H 1.48506 * 109.47435 * 330.00209 * 25 23 21 29 29 H 1.08989 * 109.47577 * 180.08579 * 1 2 3 30 30 H 1.09005 * 109.46835 * 300.08728 * 1 2 3 31 31 H 1.09002 * 109.46642 * 60.07806 * 1 2 3 32 32 H 1.09000 * 109.58949 * 54.79978 * 4 2 1 33 33 H 1.08998 * 109.70471 * 294.43969 * 4 2 1 34 34 H 1.07999 * 126.55810 * 359.97438 * 9 8 6 35 35 H 1.08995 * 109.47311 * 270.28550 * 11 10 9 36 36 H 1.09004 * 109.47235 * 30.28829 * 11 10 9 37 37 H 1.09002 * 109.47242 * 150.28569 * 11 10 9 38 38 H 0.96698 * 113.99564 * 270.02868 * 13 12 10 39 39 H 1.09004 * 109.58415 * 293.81846 * 15 5 4 40 40 H 1.08998 * 109.58539 * 173.39781 * 15 5 4 41 41 H 1.09002 * 109.49755 * 185.41566 * 16 15 5 42 42 H 1.08997 * 109.52368 * 65.33170 * 16 15 5 43 43 H 1.08999 * 109.47237 * 65.06321 * 19 17 2 44 44 H 1.08999 * 109.46903 * 305.07004 * 19 17 2 45 45 H 0.96998 * 120.00149 * 0.02562 * 20 19 17 46 46 H 0.96996 * 119.99671 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5045 -0.8292 1.1697 6 6 4.2810 -0.3856 2.1780 7 8 3.7840 0.2249 3.1052 8 6 5.7313 -0.6402 2.1572 9 6 6.6487 -0.1355 3.0291 10 7 7.8643 -0.6241 2.6516 11 6 9.1473 -0.3506 3.3038 12 6 7.6706 -1.4077 1.5549 13 8 8.6399 -2.0702 0.8791 14 7 6.3973 -1.4167 1.2606 15 6 4.1053 -1.4268 -0.0306 16 6 3.5708 -0.6952 -1.2659 17 6 2.0408 -0.7232 -1.2482 18 1 1.6966 -1.7574 -1.2349 19 6 1.5038 -0.0234 -2.4983 20 7 1.8918 -0.7842 -3.6886 21 6 1.5253 -0.3437 -4.9324 22 1 0.9466 0.5622 -5.0355 23 6 1.8979 -1.0616 -6.0605 24 7 2.6029 -2.1659 -5.9348 25 14 1.3986 -0.4603 -7.7572 26 1 2.4485 0.4442 -8.2906 27 1 1.2380 -1.6229 -8.6669 28 1 0.1123 0.2758 -7.6629 29 1 -0.3634 -1.0275 0.0015 30 1 -0.3633 0.5152 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7215 1.2981 33 1 1.7637 -0.1600 2.1402 34 1 6.4506 0.5236 3.8613 35 1 9.6004 0.5345 2.8574 36 1 8.9845 -0.1781 4.3678 37 1 9.8115 -1.2047 3.1718 38 1 9.0374 -1.5596 0.1605 39 1 3.8374 -2.4820 -0.0865 40 1 5.1895 -1.3248 0.0140 41 1 3.9334 -1.1899 -2.1670 42 1 3.9159 0.3387 -1.2546 43 1 1.9195 0.9824 -2.5586 44 1 0.4168 0.0355 -2.4431 45 1 2.4113 -1.5981 -3.5960 46 1 2.8629 -2.6677 -6.7231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185086722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:19 Heat of formation + Delta-G solvation = -16.199786 kcal Electronic energy + Delta-G solvation = -27725.494222 eV Core-core repulsion = 23844.282815 eV Total energy + Delta-G solvation = -3881.211407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.28797 -41.07333 -39.13693 -38.21602 -36.54501 -35.47829 -34.64804 -33.38774 -31.97111 -30.31243 -28.74695 -28.30871 -27.22455 -25.61853 -24.27951 -23.28342 -22.64752 -22.42302 -21.13232 -20.37858 -19.26650 -19.11690 -18.20507 -17.61872 -16.94389 -16.71432 -16.58187 -16.18037 -15.71809 -15.55282 -15.45309 -15.30359 -15.16811 -14.92298 -14.44518 -14.20773 -14.04377 -13.89613 -13.53422 -13.46999 -13.08894 -12.95290 -12.90452 -12.86298 -12.75255 -12.65525 -12.17252 -11.94589 -11.87882 -11.71032 -11.60772 -11.34669 -11.15231 -10.91916 -10.86597 -10.37075 -9.77683 -9.43867 -8.94899 -7.92418 -5.20638 0.46351 1.01567 1.41080 1.47593 1.49436 1.57947 1.99918 2.38497 2.57601 2.75577 3.40446 3.55225 3.67727 3.73789 3.84288 3.92716 4.03810 4.10612 4.27986 4.36084 4.38262 4.41907 4.51692 4.56589 4.67139 4.71705 4.72949 4.81435 4.83812 4.85245 4.96197 5.03092 5.12196 5.15024 5.21931 5.30064 5.36888 5.47120 5.49817 5.57439 5.61478 5.76143 6.29974 6.36262 6.61765 6.63878 7.14676 7.36109 8.12933 8.37266 9.31144 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.003102 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.574390 B = 9023.452838 C =10675.096447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.599 3.401 7 O -0.576 6.576 8 C -0.082 4.082 9 C 0.065 3.935 10 N -0.454 5.454 11 C 0.060 3.940 12 C 0.379 3.621 13 O -0.443 6.443 14 N -0.484 5.484 15 C 0.094 3.906 16 C -0.114 4.114 17 C -0.080 4.080 18 H 0.064 0.936 19 C 0.158 3.842 20 N -0.743 5.743 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.271 1.271 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.425 0.575 39 H 0.059 0.941 40 H 0.140 0.860 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.010 0.990 44 H 0.029 0.971 45 H 0.374 0.626 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.797 4.564 22.625 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.326 5.326 6 C 0.389 3.611 7 O -0.457 6.457 8 C -0.209 4.209 9 C -0.075 4.075 10 N -0.147 5.147 11 C -0.080 4.080 12 C 0.078 3.922 13 O -0.247 6.247 14 N -0.216 5.216 15 C -0.029 4.029 16 C -0.152 4.152 17 C -0.099 4.099 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.385 5.385 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.214 1.214 27 H -0.221 1.221 28 H -0.196 1.196 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.047 0.953 45 H 0.207 0.793 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.203 4.066 22.708 26.580 hybrid contribution 0.483 0.413 -1.219 1.375 sum 13.687 4.479 21.489 25.868 Atomic orbital electron populations 1.21796 0.93111 1.02596 1.02493 1.21339 0.97031 0.99107 0.93087 0.91577 1.21747 0.78575 1.01280 0.98721 1.47980 1.07013 1.59433 1.18134 1.17180 0.84652 0.77746 0.81542 1.90734 1.74884 1.43283 1.36805 1.20275 0.94088 1.06539 1.00006 1.22972 0.82554 1.00471 1.01487 1.46068 1.09725 1.34971 1.23970 1.22544 0.80569 1.04742 1.00152 1.20585 0.87370 0.94949 0.89295 1.84858 1.49570 1.40361 1.49941 1.70567 1.03028 1.22096 1.25863 1.22557 1.02608 0.95780 0.81917 1.21784 0.95429 1.00311 0.97673 1.21244 0.95214 0.99490 0.93912 0.91717 1.20877 0.96791 0.93468 0.85675 1.42581 1.65433 1.28903 1.01626 1.19621 1.26844 1.06020 0.85153 0.90965 1.25545 1.01690 0.98016 1.01489 1.69818 1.44367 1.18583 1.29122 0.85150 0.78029 0.76771 0.79872 1.21420 1.22084 1.19577 0.92127 0.90862 0.92424 0.90580 0.88952 0.76321 0.88071 0.86945 0.87983 0.71412 0.92281 0.84377 0.92166 0.92994 0.97233 0.95348 0.79324 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.82 71.98 0.63 -2.92 16 2 C -0.09 -2.46 2.41 -10.72 -0.03 -2.48 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.12 3.27 5.73 86.36 0.49 3.76 16 5 N -0.60 -17.93 2.97 -822.96 -2.45 -20.38 16 6 C 0.60 18.28 7.67 86.62 0.66 18.95 16 7 O -0.58 -19.32 16.31 -4.14 -0.07 -19.39 16 8 C -0.08 -2.12 6.65 40.40 0.27 -1.85 16 9 C 0.06 1.14 11.30 83.53 0.94 2.08 16 10 N -0.45 -6.17 3.16 -662.74 -2.09 -8.26 16 11 C 0.06 0.19 11.11 127.77 1.42 1.60 16 12 C 0.38 7.34 9.03 179.84 1.62 8.97 16 13 O -0.44 -6.47 13.55 -87.60 -1.19 -7.65 16 14 N -0.48 -12.65 7.79 -303.15 -2.36 -15.01 16 15 C 0.09 2.91 6.09 86.36 0.53 3.44 16 16 C -0.11 -3.95 5.25 30.67 0.16 -3.79 16 17 C -0.08 -2.76 1.73 -10.77 -0.02 -2.77 16 18 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 19 C 0.16 6.65 5.41 86.38 0.47 7.12 16 20 N -0.74 -39.07 5.32 -343.47 -1.83 -40.89 16 21 C -0.24 -14.07 9.99 84.03 0.84 -13.23 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 24 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 25 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.56 6.29 -2.39 -0.02 1.54 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 2.52 7.00 -2.39 -0.02 2.51 16 34 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.43 2.06 9.06 -74.06 -0.67 1.39 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.14 4.31 4.11 -20.89 -0.09 4.22 16 41 H 0.06 2.40 7.15 -2.39 -0.02 2.38 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.03 1.18 6.14 -2.39 -0.01 1.17 16 45 H 0.37 20.83 6.85 -92.71 -0.63 20.19 16 46 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -78.50 370.07 0.43 -78.07 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.37 Total: 29.45 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 8.47 Total: 14.93 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -8.45 Total: -144.44 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.25 Total: -27.04 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -78.50 0.43 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.870 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds