Wall clock time and date at job start Tue Mar 31 2020 14:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99961 * 2 1 4 4 H 1.09004 * 109.47011 * 29.99862 * 3 2 1 5 5 C 1.50694 * 109.47384 * 150.00256 * 3 2 1 6 6 O 1.21284 * 119.99963 * 4.99389 * 5 3 2 7 7 N 1.34772 * 120.00111 * 185.00188 * 5 3 2 8 8 C 1.46498 * 120.00049 * 179.97438 * 7 5 3 9 9 H 1.09005 * 110.78011 * 31.75638 * 8 7 5 10 10 C 1.54330 * 110.72074 * 268.52038 * 8 7 5 11 11 N 1.47022 * 107.27093 * 219.44387 * 10 8 7 12 12 C 1.36938 * 125.64698 * 178.97778 * 11 10 8 13 13 H 1.07999 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.38816 * 119.99955 * 359.97229 * 12 11 10 15 15 N 1.31614 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99717 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47152 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.47025 * 209.99986 * 16 14 12 19 19 H 1.48493 * 109.47438 * 330.00303 * 16 14 12 20 20 C 1.47523 * 108.71559 * 358.93837 * 11 10 8 21 21 C 1.54909 * 104.78433 * 24.12363 * 20 11 10 22 22 H 1.09002 * 111.00594 * 81.08595 * 21 20 11 23 23 C 1.53004 * 111.00603 * 204.90137 * 21 20 11 24 24 C 1.50700 * 109.47109 * 270.00292 * 3 2 1 25 25 C 1.39875 * 126.04056 * 325.02209 * 24 3 2 26 26 N 1.30827 * 108.20670 * 179.97438 * 25 24 3 27 27 N 1.40090 * 108.20333 * 0.02562 * 26 25 24 28 28 C 1.46498 * 126.03446 * 179.97438 * 27 26 25 29 29 C 1.34940 * 107.92527 * 359.75588 * 27 26 25 30 30 H 1.09007 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47469 * 300.00049 * 1 2 3 32 32 H 1.08998 * 109.47603 * 59.99783 * 1 2 3 33 33 H 0.97001 * 120.00101 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.87833 * 338.86150 * 10 8 7 35 35 H 1.08997 * 109.88366 * 100.02558 * 10 8 7 36 36 H 0.97002 * 120.00021 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37251 * 265.30968 * 20 11 10 38 38 H 1.09004 * 110.41044 * 142.95250 * 20 11 10 39 39 H 1.08994 * 109.46941 * 175.41948 * 23 21 20 40 40 H 1.09004 * 109.46932 * 295.41783 * 23 21 20 41 41 H 1.09002 * 109.47107 * 55.41072 * 23 21 20 42 42 H 1.08007 * 125.89378 * 359.96131 * 25 24 3 43 43 H 1.09008 * 109.47204 * 89.97797 * 28 27 26 44 44 H 1.09000 * 109.47367 * 209.97418 * 28 27 26 45 45 H 1.09001 * 109.47677 * 329.98011 * 28 27 26 46 46 H 1.08001 * 126.12793 * 180.23867 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2639 0.7103 6 8 3.7896 0.2046 1.0914 7 7 4.0253 2.4040 0.9223 8 6 5.3164 2.3637 1.6133 9 1 5.8382 1.4299 1.4039 10 6 5.1286 2.5552 3.1331 11 7 6.2286 3.4091 3.6048 12 6 6.4140 3.8323 4.8938 13 1 7.2577 4.4600 5.1401 14 6 5.5175 3.4547 5.8841 15 7 4.4895 2.6894 5.5841 16 14 5.7708 4.0315 7.6426 17 1 5.0677 5.3237 7.8459 18 1 5.2239 3.0177 8.5797 19 1 7.2221 4.2118 7.9002 20 6 7.1003 3.7336 2.4597 21 6 6.1906 3.5822 1.2150 22 1 5.5777 4.4715 1.0685 23 6 7.0182 3.2780 -0.0354 24 6 2.2144 1.7644 -1.4208 25 6 2.5629 0.9531 -2.5057 26 7 2.6472 1.7085 -3.5705 27 7 2.3552 3.0265 -3.1963 28 6 2.3377 4.1909 -4.0851 29 6 2.0882 3.0333 -1.8736 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6647 3.2513 0.6173 34 1 4.1724 3.0399 3.3302 35 1 5.1674 1.5890 3.6361 36 1 3.8629 2.4259 6.2760 37 1 7.9343 3.0338 2.4074 38 1 7.4670 4.7570 2.5392 39 1 6.3506 3.0963 -0.8776 40 1 7.6632 4.1276 -0.2597 41 1 7.6305 2.3935 0.1405 42 1 2.7332 -0.1129 -2.4702 43 1 1.3381 4.3147 -4.5022 44 1 2.6088 5.0831 -3.5206 45 1 3.0528 4.0415 -4.8941 46 1 1.8234 3.8971 -1.2819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208149945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:10 Heat of formation + Delta-G solvation = 34.787379 kcal Electronic energy + Delta-G solvation = -28203.428897 eV Core-core repulsion = 24324.428460 eV Total energy + Delta-G solvation = -3879.000438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49147 -39.51429 -37.95377 -36.88675 -33.88720 -33.50519 -32.62966 -31.26642 -30.34361 -28.66931 -27.53629 -26.63098 -25.66584 -25.16780 -23.45782 -21.29075 -21.20567 -20.37165 -19.93595 -19.50778 -17.51010 -17.04398 -16.74334 -16.37806 -15.72802 -15.57848 -15.25990 -14.84954 -14.55445 -14.42965 -14.03726 -13.69530 -13.42288 -13.26848 -13.06143 -12.91588 -12.76768 -12.74808 -12.55035 -12.36414 -11.85724 -11.67393 -11.40899 -11.31499 -10.99271 -10.85293 -10.76408 -10.56580 -10.36138 -10.01785 -9.94007 -9.90218 -9.67629 -9.61787 -9.42149 -8.61360 -8.53787 -8.36183 -6.80742 -5.66624 -3.01803 1.63737 2.28562 2.55298 3.09568 3.15070 3.41787 3.47002 3.49528 4.17802 4.31370 4.52550 4.59743 4.81561 4.84243 4.97824 5.01250 5.08438 5.17236 5.19888 5.33923 5.37148 5.39100 5.47538 5.57436 5.60899 5.64750 5.72919 5.79314 6.01932 6.02186 6.18695 6.24523 6.38339 6.44320 6.52330 6.64582 6.72605 6.83175 6.95403 7.06872 7.50323 7.60287 7.63236 7.87845 7.98046 8.28448 8.68428 9.24440 9.84974 10.50233 11.43952 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.003574 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.256118 B = 7833.245136 C = 8879.711498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.351 6.351 3 C 0.155 3.845 4 H 0.089 0.911 5 C 0.521 3.479 6 O -0.517 6.517 7 N -0.707 5.707 8 C 0.123 3.877 9 H 0.089 0.911 10 C 0.173 3.827 11 N -0.606 5.606 12 C -0.231 4.231 13 H 0.078 0.922 14 C -0.007 4.007 15 N -0.918 5.918 16 Si 0.911 3.089 17 H -0.290 1.290 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.141 3.859 21 C -0.112 4.112 22 H 0.075 0.925 23 C -0.136 4.136 24 C -0.261 4.261 25 C 0.081 3.919 26 N -0.299 5.299 27 N -0.375 5.375 28 C 0.102 3.898 29 C 0.068 3.932 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.392 0.608 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.252 0.748 37 H 0.022 0.978 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.186 0.814 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 3.699 -19.201 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.092 3.908 4 H 0.107 0.893 5 C 0.305 3.695 6 O -0.392 6.392 7 N -0.358 5.358 8 C 0.018 3.982 9 H 0.107 0.893 10 C 0.047 3.953 11 N -0.333 5.333 12 C -0.359 4.359 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.566 5.566 16 Si 0.742 3.258 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.014 3.986 21 C -0.132 4.132 22 H 0.093 0.907 23 C -0.194 4.194 24 C -0.273 4.273 25 C -0.105 4.105 26 N -0.120 5.120 27 N -0.156 5.156 28 C -0.040 4.040 29 C -0.079 4.079 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.225 0.775 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.203 0.797 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.449 2.868 -20.067 21.596 hybrid contribution -0.582 1.026 1.696 2.066 sum -8.031 3.894 -18.370 20.424 Atomic orbital electron populations 1.22845 0.80886 1.02969 0.99907 1.88033 1.19435 1.24673 1.94590 1.19945 0.93928 0.86576 0.90385 0.89344 1.20043 0.85776 0.84467 0.79254 1.90724 1.68649 1.29757 1.50041 1.45709 1.22023 1.08595 1.59515 1.22482 0.81995 0.98422 0.95268 0.89323 1.21481 0.91983 0.95658 0.86129 1.44433 1.26785 1.58235 1.03834 1.19050 1.08305 1.25776 0.82754 0.90371 1.24817 0.97462 0.99972 0.98123 1.69974 1.15246 1.39482 1.31854 0.86131 0.77472 0.77684 0.84532 1.21695 1.21673 1.20704 1.21601 0.92772 0.98016 0.86189 1.22598 0.97561 0.97569 0.95500 0.90666 1.21682 0.99494 1.01305 0.96891 1.20264 1.16963 0.93251 0.96857 1.23746 0.97189 1.00398 0.89173 1.77419 1.23801 0.87278 1.23507 1.48481 1.53325 1.07255 1.06581 1.21868 1.03599 0.84175 0.94324 1.22283 1.01016 0.99016 0.85626 0.89328 0.93761 0.94131 0.77478 0.93186 0.93409 0.93742 0.96028 0.94049 0.93286 0.92918 0.92589 0.79701 0.90790 0.89310 0.89249 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.81 101.05 1.09 1.41 16 2 O -0.35 -5.11 9.60 -55.09 -0.53 -5.64 16 3 C 0.15 2.08 2.96 -29.04 -0.09 1.99 16 4 H 0.09 0.98 7.79 -51.93 -0.40 0.58 16 5 C 0.52 9.14 7.16 -10.99 -0.08 9.06 16 6 O -0.52 -11.57 16.15 -14.31 -0.23 -11.80 16 7 N -0.71 -11.47 5.06 -52.03 -0.26 -11.73 16 8 C 0.12 2.38 2.79 -66.09 -0.18 2.20 16 9 H 0.09 1.87 7.45 -51.93 -0.39 1.49 16 10 C 0.17 4.31 5.12 -3.06 -0.02 4.29 16 11 N -0.61 -15.55 3.40 -169.99 -0.58 -16.13 16 12 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 13 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 14 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 15 N -0.92 -27.46 10.31 55.49 0.57 -26.88 16 16 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.14 2.87 6.71 -2.47 -0.02 2.86 16 21 C -0.11 -1.88 3.26 -88.47 -0.29 -2.17 16 22 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 23 C -0.14 -1.88 9.29 37.16 0.35 -1.54 16 24 C -0.26 -3.07 5.05 -105.05 -0.53 -3.60 16 25 C 0.08 1.04 11.63 -17.37 -0.20 0.84 16 26 N -0.30 -3.79 12.58 30.63 0.39 -3.40 16 27 N -0.37 -3.66 4.01 -68.16 -0.27 -3.93 16 28 C 0.10 0.55 11.47 59.85 0.69 1.24 16 29 C 0.07 0.63 11.40 -17.23 -0.20 0.43 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.39 5.10 8.56 -40.82 -0.35 4.75 16 34 H 0.05 1.35 7.27 -51.93 -0.38 0.97 16 35 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.19 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -36.83 383.63 -7.24 -44.07 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.36 Total: 2.34 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 0.27 Total: 10.09 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.16 Total: -62.08 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.76 Total: -17.44 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.83 -7.24 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208149945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.861 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds