Wall clock time and date at job start Tue Mar 31 2020 14:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99961 * 2 1 4 4 H 1.09004 * 109.47011 * 29.99862 * 3 2 1 5 5 C 1.50694 * 109.47384 * 150.00256 * 3 2 1 6 6 O 1.21284 * 119.99963 * 4.99389 * 5 3 2 7 7 N 1.34772 * 120.00111 * 185.00188 * 5 3 2 8 8 C 1.46498 * 120.00049 * 179.97438 * 7 5 3 9 9 H 1.09005 * 110.78011 * 31.75638 * 8 7 5 10 10 C 1.54330 * 110.72074 * 268.52038 * 8 7 5 11 11 N 1.47022 * 107.27093 * 219.44387 * 10 8 7 12 12 C 1.36938 * 125.64698 * 178.97778 * 11 10 8 13 13 H 1.07999 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.38816 * 119.99955 * 359.97229 * 12 11 10 15 15 N 1.31614 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99717 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47152 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.47025 * 209.99986 * 16 14 12 19 19 H 1.48493 * 109.47438 * 330.00303 * 16 14 12 20 20 C 1.47523 * 108.71559 * 358.93837 * 11 10 8 21 21 C 1.54909 * 104.78433 * 24.12363 * 20 11 10 22 22 H 1.09002 * 111.00594 * 81.08595 * 21 20 11 23 23 C 1.53004 * 111.00603 * 204.90137 * 21 20 11 24 24 C 1.50700 * 109.47109 * 270.00292 * 3 2 1 25 25 C 1.39875 * 126.04056 * 325.02209 * 24 3 2 26 26 N 1.30827 * 108.20670 * 179.97438 * 25 24 3 27 27 N 1.40090 * 108.20333 * 0.02562 * 26 25 24 28 28 C 1.46498 * 126.03446 * 179.97438 * 27 26 25 29 29 C 1.34940 * 107.92527 * 359.75588 * 27 26 25 30 30 H 1.09007 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47469 * 300.00049 * 1 2 3 32 32 H 1.08998 * 109.47603 * 59.99783 * 1 2 3 33 33 H 0.97001 * 120.00101 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.87833 * 338.86150 * 10 8 7 35 35 H 1.08997 * 109.88366 * 100.02558 * 10 8 7 36 36 H 0.97002 * 120.00021 * 180.02562 * 15 14 12 37 37 H 1.09001 * 110.37251 * 265.30968 * 20 11 10 38 38 H 1.09004 * 110.41044 * 142.95250 * 20 11 10 39 39 H 1.08994 * 109.46941 * 175.41948 * 23 21 20 40 40 H 1.09004 * 109.46932 * 295.41783 * 23 21 20 41 41 H 1.09002 * 109.47107 * 55.41072 * 23 21 20 42 42 H 1.08007 * 125.89378 * 359.96131 * 25 24 3 43 43 H 1.09008 * 109.47204 * 89.97797 * 28 27 26 44 44 H 1.09000 * 109.47367 * 209.97418 * 28 27 26 45 45 H 1.09001 * 109.47677 * 329.98011 * 28 27 26 46 46 H 1.08001 * 126.12793 * 180.23867 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2639 0.7103 6 8 3.7896 0.2046 1.0914 7 7 4.0253 2.4040 0.9223 8 6 5.3164 2.3637 1.6133 9 1 5.8382 1.4299 1.4039 10 6 5.1286 2.5552 3.1331 11 7 6.2286 3.4091 3.6048 12 6 6.4140 3.8323 4.8938 13 1 7.2577 4.4600 5.1401 14 6 5.5175 3.4547 5.8841 15 7 4.4895 2.6894 5.5841 16 14 5.7708 4.0315 7.6426 17 1 5.0677 5.3237 7.8459 18 1 5.2239 3.0177 8.5797 19 1 7.2221 4.2118 7.9002 20 6 7.1003 3.7336 2.4597 21 6 6.1906 3.5822 1.2150 22 1 5.5777 4.4715 1.0685 23 6 7.0182 3.2780 -0.0354 24 6 2.2144 1.7644 -1.4208 25 6 2.5629 0.9531 -2.5057 26 7 2.6472 1.7085 -3.5705 27 7 2.3552 3.0265 -3.1963 28 6 2.3377 4.1909 -4.0851 29 6 2.0882 3.0333 -1.8736 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6647 3.2513 0.6173 34 1 4.1724 3.0399 3.3302 35 1 5.1674 1.5890 3.6361 36 1 3.8629 2.4259 6.2760 37 1 7.9343 3.0338 2.4074 38 1 7.4670 4.7570 2.5392 39 1 6.3506 3.0963 -0.8776 40 1 7.6632 4.1276 -0.2597 41 1 7.6305 2.3935 0.1405 42 1 2.7332 -0.1129 -2.4702 43 1 1.3381 4.3147 -4.5022 44 1 2.6088 5.0831 -3.5206 45 1 3.0528 4.0415 -4.8941 46 1 1.8234 3.8971 -1.2819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208149945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:09 Heat of formation + Delta-G solvation = 7.940355 kcal Electronic energy + Delta-G solvation = -28204.593072 eV Core-core repulsion = 24324.428460 eV Total energy + Delta-G solvation = -3880.164612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32562 -40.90508 -39.36839 -38.20826 -35.60332 -34.45269 -34.06990 -32.31399 -32.08830 -29.82888 -28.88471 -27.37426 -27.34338 -26.27978 -25.08483 -22.61403 -22.04742 -21.64282 -21.52080 -20.84755 -18.87184 -18.49267 -18.06454 -17.51960 -17.06912 -16.75713 -16.31948 -16.18601 -15.77051 -15.65826 -15.29548 -15.17446 -14.81999 -14.54799 -14.10195 -14.06814 -13.96228 -13.71534 -13.52699 -13.38753 -13.32844 -13.11055 -13.01289 -12.87021 -12.57234 -12.30958 -12.18347 -12.02908 -11.84033 -11.68892 -11.64891 -11.46150 -11.11675 -10.73138 -10.61229 -10.37458 -9.96798 -9.40851 -8.90740 -7.82544 -5.20476 0.89060 1.46070 1.48962 1.52590 1.57570 1.68011 1.79343 1.98765 2.50773 3.11606 3.35823 3.58382 3.61097 3.75180 3.90129 3.96333 4.06683 4.09159 4.12052 4.30046 4.36316 4.50925 4.51350 4.57517 4.61697 4.63173 4.72710 4.77259 4.84863 4.87911 4.88200 4.92127 5.03709 5.07382 5.23111 5.29312 5.46966 5.49377 5.56086 5.64781 5.81038 6.07503 6.15709 6.18517 6.65150 6.69697 7.08690 7.34677 7.77455 8.41555 9.26620 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.003574 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.256118 B = 7833.245136 C = 8879.711498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.385 6.385 3 C 0.167 3.833 4 H 0.116 0.884 5 C 0.514 3.486 6 O -0.576 6.576 7 N -0.692 5.692 8 C 0.138 3.862 9 H 0.066 0.934 10 C 0.189 3.811 11 N -0.627 5.627 12 C -0.243 4.243 13 H 0.088 0.912 14 C -0.068 4.068 15 N -0.952 5.952 16 Si 0.980 3.020 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.268 1.268 20 C 0.132 3.868 21 C -0.090 4.090 22 H 0.097 0.903 23 C -0.127 4.127 24 C -0.281 4.281 25 C 0.064 3.936 26 N -0.328 5.328 27 N -0.370 5.370 28 C 0.091 3.909 29 C 0.090 3.910 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.412 0.588 34 H 0.023 0.977 35 H -0.013 1.013 36 H 0.244 0.756 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.174 0.826 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 7.029 -20.877 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.303 6.303 3 C 0.105 3.895 4 H 0.134 0.866 5 C 0.300 3.700 6 O -0.455 6.455 7 N -0.344 5.344 8 C 0.031 3.969 9 H 0.084 0.916 10 C 0.063 3.937 11 N -0.354 5.354 12 C -0.372 4.372 13 H 0.106 0.894 14 C -0.261 4.261 15 N -0.601 5.601 16 Si 0.808 3.192 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.193 1.193 20 C 0.007 3.993 21 C -0.110 4.110 22 H 0.116 0.884 23 C -0.184 4.184 24 C -0.293 4.293 25 C -0.121 4.121 26 N -0.150 5.150 27 N -0.151 5.151 28 C -0.048 4.048 29 C -0.059 4.059 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.249 0.751 34 H 0.042 0.958 35 H 0.005 0.995 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.191 0.809 43 H 0.108 0.892 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.709 6.259 -21.813 23.967 hybrid contribution -0.478 0.008 2.180 2.231 sum -8.187 6.267 -19.633 22.176 Atomic orbital electron populations 1.23020 0.78804 1.04023 1.01003 1.87989 1.21761 1.25699 1.94820 1.19806 0.91514 0.86913 0.91301 0.86610 1.21008 0.87052 0.83633 0.78290 1.90693 1.70376 1.31928 1.52485 1.45487 1.20903 1.09536 1.58460 1.22016 0.83941 0.98981 0.91929 0.91575 1.21108 0.90968 0.92190 0.89461 1.44741 1.27776 1.58154 1.04700 1.19515 1.08250 1.25248 0.84150 0.89405 1.25702 0.97492 1.00533 1.02325 1.70232 1.16216 1.41057 1.32565 0.85057 0.77932 0.76975 0.79239 1.20736 1.22639 1.19291 1.21864 0.92751 0.98694 0.85980 1.22510 0.96627 0.96649 0.95210 0.88439 1.21618 0.99473 1.02045 0.95307 1.20092 1.19382 0.94362 0.95467 1.23718 0.97990 1.00412 0.90007 1.77362 1.24956 0.88894 1.23813 1.48851 1.51753 1.07136 1.07383 1.22272 1.04731 0.83476 0.94369 1.22839 0.98397 0.99122 0.85539 0.88495 0.92979 0.92518 0.75072 0.95841 0.99512 0.94637 0.96101 0.92358 0.91995 0.90197 0.93546 0.80868 0.89201 0.86243 0.89340 0.76395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.81 113.37 1.23 1.77 16 2 O -0.38 -11.38 9.60 -129.99 -1.25 -12.62 16 3 C 0.17 4.37 2.96 29.10 0.09 4.45 16 4 H 0.12 2.32 7.79 -2.38 -0.02 2.30 16 5 C 0.51 18.35 7.16 87.66 0.63 18.98 16 6 O -0.58 -27.30 16.15 15.95 0.26 -27.04 16 7 N -0.69 -22.02 5.06 -436.91 -2.21 -24.23 16 8 C 0.14 5.39 2.79 46.18 0.13 5.52 16 9 H 0.07 2.92 7.45 -2.38 -0.02 2.90 16 10 C 0.19 9.83 5.12 86.73 0.44 10.28 16 11 N -0.63 -32.63 3.40 -691.72 -2.35 -34.98 16 12 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 13 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 14 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 15 N -0.95 -59.29 10.31 21.65 0.22 -59.07 16 16 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.13 5.23 6.71 86.84 0.58 5.81 16 21 C -0.09 -2.82 3.26 -9.40 -0.03 -2.85 16 22 H 0.10 2.67 8.01 -2.39 -0.02 2.65 16 23 C -0.13 -3.09 9.29 71.98 0.67 -2.42 16 24 C -0.28 -6.12 5.05 -20.14 -0.10 -6.23 16 25 C 0.06 1.62 11.63 85.24 0.99 2.62 16 26 N -0.33 -7.91 12.58 -57.02 -0.72 -8.62 16 27 N -0.37 -6.03 4.01 -369.56 -1.48 -7.51 16 28 C 0.09 0.62 11.47 127.77 1.47 2.08 16 29 C 0.09 1.32 11.40 83.54 0.95 2.27 16 30 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.05 0.93 8.08 -2.39 -0.02 0.92 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.41 9.64 8.56 -92.71 -0.79 8.85 16 34 H 0.02 1.32 7.27 -2.39 -0.02 1.30 16 35 H -0.01 -0.85 7.50 -2.39 -0.02 -0.87 16 36 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.02 0.84 8.03 -2.39 -0.02 0.82 16 38 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 42 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -86.66 383.63 3.05 -83.61 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.18 Total: 16.13 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 8.37 Total: 25.96 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -6.54 Total: -134.41 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.99 Total: -39.67 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -86.66 3.05 -83.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208149945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.547 kcal (2) G-P(sol) polarization free energy of solvation -86.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds