Wall clock time and date at job start Tue Mar 31 2020 14:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 H 1.08998 * 109.46852 * 29.99962 * 3 2 1 5 5 C 1.50698 * 109.46957 * 270.00262 * 3 2 1 6 6 O 1.21277 * 120.00058 * 354.99631 * 5 3 2 7 7 N 1.34778 * 119.99843 * 175.00182 * 5 3 2 8 8 C 1.46498 * 119.99967 * 179.97438 * 7 5 3 9 9 H 1.09000 * 110.78019 * 36.78983 * 8 7 5 10 10 C 1.54319 * 110.72349 * 273.54585 * 8 7 5 11 11 N 1.47029 * 107.27012 * 219.44549 * 10 8 7 12 12 C 1.36936 * 125.64354 * 178.97539 * 11 10 8 13 13 H 1.07999 * 119.99518 * 174.79282 * 12 11 10 14 14 C 1.38812 * 120.00383 * 354.79076 * 12 11 10 15 15 N 1.31621 * 120.00098 * 7.05412 * 14 12 11 16 16 Si 1.86798 * 120.00036 * 187.05543 * 14 12 11 17 17 H 1.48501 * 109.47413 * 94.98720 * 16 14 12 18 18 H 1.48496 * 109.47210 * 214.98620 * 16 14 12 19 19 H 1.48498 * 109.47482 * 334.98719 * 16 14 12 20 20 C 1.47416 * 108.70364 * 358.93858 * 11 10 8 21 21 C 1.54915 * 104.83400 * 24.13141 * 20 11 10 22 22 H 1.08993 * 111.00621 * 81.06415 * 21 20 11 23 23 C 1.52995 * 111.00163 * 204.87829 * 21 20 11 24 24 C 1.50698 * 109.46984 * 150.00293 * 3 2 1 25 25 C 1.39873 * 126.04337 * 39.69207 * 24 3 2 26 26 N 1.30836 * 108.20348 * 179.82008 * 25 24 3 27 27 N 1.40090 * 108.20273 * 0.43695 * 26 25 24 28 28 C 1.46502 * 126.03375 * 179.69962 * 27 26 25 29 29 C 1.34949 * 107.92628 * 359.72136 * 27 26 25 30 30 H 1.09006 * 109.47664 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47110 * 299.99782 * 1 2 3 32 32 H 1.08997 * 109.47627 * 59.99924 * 1 2 3 33 33 H 0.97000 * 120.00054 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.88629 * 100.02779 * 10 8 7 35 35 H 1.09005 * 109.88133 * 338.86162 * 10 8 7 36 36 H 0.96998 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.36600 * 142.96818 * 20 11 10 38 38 H 1.08994 * 110.36799 * 265.28883 * 20 11 10 39 39 H 1.08995 * 109.47806 * 58.54733 * 23 21 20 40 40 H 1.09003 * 109.46981 * 178.54658 * 23 21 20 41 41 H 1.09005 * 109.47579 * 298.54167 * 23 21 20 42 42 H 1.07994 * 125.89600 * 359.97438 * 25 24 3 43 43 H 1.08998 * 109.47380 * 270.02593 * 28 27 26 44 44 H 1.08997 * 109.47292 * 30.02774 * 28 27 26 45 45 H 1.08998 * 109.47028 * 150.02631 * 28 27 26 46 46 H 1.08000 * 126.12408 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8580 3.4583 -3.0498 9 1 2.0880 3.0482 -3.7033 10 6 4.2644 3.0692 -3.5518 11 7 4.7671 4.1927 -4.3560 12 6 5.9916 4.2525 -4.9661 13 1 6.2359 5.0876 -5.6058 14 6 6.9188 3.2398 -4.7622 15 7 6.5751 2.1567 -4.0979 16 14 8.6543 3.4140 -5.4308 17 1 9.5413 3.9558 -4.3701 18 1 9.1543 2.0841 -5.8625 19 1 8.6472 4.3406 -6.5911 20 6 3.7342 5.2437 -4.3975 21 6 2.8770 5.0078 -3.1289 22 1 3.3548 5.4381 -2.2489 23 6 1.4641 5.5659 -3.3102 24 6 3.3386 1.2637 0.7103 25 6 4.2898 0.2423 0.6177 26 7 5.3093 0.5637 1.3721 27 7 5.0345 1.7968 1.9773 28 6 5.9110 2.5158 2.9052 29 6 3.8195 2.2051 1.5551 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8469 3.6153 -0.9324 34 1 4.2033 2.1713 -4.1667 35 1 4.9260 2.8955 -2.7032 36 1 7.2229 1.4489 -3.9558 37 1 4.1958 6.2307 -4.3653 38 1 3.1225 5.1393 -5.2936 39 1 0.9926 5.0893 -4.1697 40 1 0.8760 5.3639 -2.4149 41 1 1.5168 6.6421 -3.4751 42 1 4.1993 -0.6552 0.0240 43 1 5.6898 2.2075 3.9269 44 1 6.9512 2.2868 2.6737 45 1 5.7443 3.5884 2.8052 46 1 3.3203 3.1193 1.8406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208149949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:13 Heat of formation + Delta-G solvation = 35.065513 kcal Electronic energy + Delta-G solvation = -28511.654948 eV Core-core repulsion = 24632.666571 eV Total energy + Delta-G solvation = -3878.988377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26344 -39.55960 -37.95417 -36.73532 -33.87316 -33.37287 -32.59272 -31.18215 -30.34579 -28.49986 -27.55743 -26.31225 -25.68194 -25.20720 -23.43938 -21.17593 -21.01035 -20.34308 -19.93907 -19.41341 -17.37252 -17.01685 -16.78943 -16.37740 -15.59104 -15.38615 -15.23106 -14.78345 -14.52370 -14.22451 -13.93309 -13.67938 -13.40440 -13.12870 -13.02247 -12.76184 -12.73940 -12.66216 -12.45489 -12.18262 -11.87424 -11.69475 -11.41833 -11.30763 -10.96656 -10.76557 -10.60284 -10.46720 -10.38007 -10.32681 -9.95362 -9.88274 -9.65029 -9.36859 -9.20616 -8.55125 -8.38849 -8.31901 -6.77687 -5.64150 -2.99036 1.85669 2.50007 2.77211 3.08107 3.41579 3.43775 3.48146 3.51500 4.01349 4.54526 4.55107 4.71363 4.90039 5.00672 5.02969 5.08557 5.17456 5.25809 5.31625 5.31902 5.40109 5.45916 5.48547 5.59315 5.69744 5.78450 5.79169 5.96364 6.00009 6.01562 6.16282 6.22586 6.36348 6.52608 6.64900 6.69204 6.84102 6.93229 6.97673 7.08653 7.61645 7.68742 7.75858 7.92277 7.99585 8.31677 8.68751 9.26701 9.87808 10.53241 11.46142 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.004776 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.866268 B = 5861.547295 C = 7250.026198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.160 3.840 4 H 0.084 0.916 5 C 0.495 3.505 6 O -0.522 6.522 7 N -0.708 5.708 8 C 0.122 3.878 9 H 0.085 0.915 10 C 0.174 3.826 11 N -0.606 5.606 12 C -0.234 4.234 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.912 5.912 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.141 3.859 21 C -0.113 4.113 22 H 0.076 0.924 23 C -0.136 4.136 24 C -0.238 4.238 25 C 0.089 3.911 26 N -0.294 5.294 27 N -0.373 5.373 28 C 0.103 3.897 29 C 0.068 3.932 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.392 0.608 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.252 0.748 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.186 0.814 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 3.921 15.958 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.097 3.903 4 H 0.102 0.898 5 C 0.279 3.721 6 O -0.397 6.397 7 N -0.360 5.360 8 C 0.018 3.982 9 H 0.103 0.897 10 C 0.049 3.951 11 N -0.333 5.333 12 C -0.363 4.363 13 H 0.096 0.904 14 C -0.202 4.202 15 N -0.559 5.559 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.206 1.206 20 C 0.015 3.985 21 C -0.133 4.133 22 H 0.094 0.906 23 C -0.194 4.194 24 C -0.250 4.250 25 C -0.097 4.097 26 N -0.114 5.114 27 N -0.154 5.154 28 C -0.039 4.039 29 C -0.079 4.079 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.225 0.775 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.203 0.797 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.237 2.763 15.793 19.022 hybrid contribution 0.154 0.846 -0.306 0.913 sum -10.083 3.609 15.487 18.829 Atomic orbital electron populations 1.22832 0.80863 1.03081 0.99777 1.87999 1.19659 1.24827 1.94407 1.19874 0.92039 0.86644 0.91721 0.89796 1.21066 0.77515 0.82019 0.91487 1.90715 1.50187 1.53045 1.45756 1.45850 1.67238 1.14092 1.08801 1.22457 1.00844 0.93150 0.81794 0.89700 1.21463 0.87832 0.90482 0.95361 1.44421 1.14067 1.14652 1.60143 1.19021 0.88497 1.06009 1.22724 0.90408 1.24846 0.98285 0.96577 1.00471 1.69997 1.33353 1.07200 1.45301 0.86162 0.84910 0.76909 0.78168 1.21748 1.21751 1.20629 1.21571 0.90253 0.93191 0.93528 1.22604 0.95803 0.94676 1.00246 0.90613 1.21694 0.95950 1.00483 1.01300 1.19406 0.98641 0.99073 1.07916 1.23735 0.89865 0.99514 0.96626 1.77467 1.23013 0.96929 1.14037 1.48434 1.14043 1.16748 1.36203 1.21849 0.95034 0.95789 0.91187 1.22100 0.88081 1.00031 0.97690 0.89351 0.94261 0.93614 0.77522 0.93726 0.93039 0.93708 0.94057 0.96175 0.92624 0.93210 0.92783 0.79720 0.90854 0.89137 0.89449 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.81 101.05 1.09 1.43 16 2 O -0.35 -5.16 9.66 -55.09 -0.53 -5.69 16 3 C 0.16 2.18 2.95 -29.04 -0.09 2.09 16 4 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 5 C 0.49 8.62 7.12 -10.99 -0.08 8.54 16 6 O -0.52 -11.48 16.24 -14.30 -0.23 -11.71 16 7 N -0.71 -11.51 5.08 -52.03 -0.26 -11.77 16 8 C 0.12 2.37 2.70 -66.10 -0.18 2.19 16 9 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 10 C 0.17 4.46 5.13 -3.06 -0.02 4.44 16 11 N -0.61 -15.84 3.39 -170.07 -0.58 -16.42 16 12 C -0.23 -6.70 10.26 -15.06 -0.15 -6.85 16 13 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 14 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 15 N -0.91 -28.14 10.36 55.49 0.57 -27.56 16 16 Si 0.91 22.77 29.56 -169.99 -5.02 17.75 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 21 C -0.11 -1.88 3.25 -88.47 -0.29 -2.17 16 22 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 23 C -0.14 -1.76 9.30 37.15 0.35 -1.42 16 24 C -0.24 -3.35 5.06 -105.05 -0.53 -3.88 16 25 C 0.09 1.47 11.71 -17.36 -0.20 1.27 16 26 N -0.29 -4.86 12.58 30.62 0.39 -4.48 16 27 N -0.37 -4.79 4.01 -68.16 -0.27 -5.07 16 28 C 0.10 0.84 11.47 59.85 0.69 1.53 16 29 C 0.07 0.78 11.40 -17.22 -0.20 0.58 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.39 5.13 8.52 -40.82 -0.35 4.79 16 34 H 0.04 1.34 7.61 -51.93 -0.40 0.95 16 35 H 0.05 1.47 7.18 -51.93 -0.37 1.10 16 36 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 39 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.19 3.02 8.06 -52.49 -0.42 2.59 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -38.07 383.85 -7.24 -45.32 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.36 Total: 3.45 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 0.28 Total: 10.41 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.16 Total: -65.30 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.76 Total: -17.41 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.07 -7.24 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208149949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.381 kcal (2) G-P(sol) polarization free energy of solvation -38.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds