Wall clock time and date at job start Tue Mar 31 2020 14:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 H 1.08998 * 109.46852 * 29.99962 * 3 2 1 5 5 C 1.50698 * 109.46957 * 270.00262 * 3 2 1 6 6 O 1.21277 * 120.00058 * 354.99631 * 5 3 2 7 7 N 1.34778 * 119.99843 * 175.00182 * 5 3 2 8 8 C 1.46498 * 119.99967 * 179.97438 * 7 5 3 9 9 H 1.09000 * 110.78019 * 36.78983 * 8 7 5 10 10 C 1.54319 * 110.72349 * 273.54585 * 8 7 5 11 11 N 1.47029 * 107.27012 * 219.44549 * 10 8 7 12 12 C 1.36936 * 125.64354 * 178.97539 * 11 10 8 13 13 H 1.07999 * 119.99518 * 174.79282 * 12 11 10 14 14 C 1.38812 * 120.00383 * 354.79076 * 12 11 10 15 15 N 1.31621 * 120.00098 * 7.05412 * 14 12 11 16 16 Si 1.86798 * 120.00036 * 187.05543 * 14 12 11 17 17 H 1.48501 * 109.47413 * 94.98720 * 16 14 12 18 18 H 1.48496 * 109.47210 * 214.98620 * 16 14 12 19 19 H 1.48498 * 109.47482 * 334.98719 * 16 14 12 20 20 C 1.47416 * 108.70364 * 358.93858 * 11 10 8 21 21 C 1.54915 * 104.83400 * 24.13141 * 20 11 10 22 22 H 1.08993 * 111.00621 * 81.06415 * 21 20 11 23 23 C 1.52995 * 111.00163 * 204.87829 * 21 20 11 24 24 C 1.50698 * 109.46984 * 150.00293 * 3 2 1 25 25 C 1.39873 * 126.04337 * 39.69207 * 24 3 2 26 26 N 1.30836 * 108.20348 * 179.82008 * 25 24 3 27 27 N 1.40090 * 108.20273 * 0.43695 * 26 25 24 28 28 C 1.46502 * 126.03375 * 179.69962 * 27 26 25 29 29 C 1.34949 * 107.92628 * 359.72136 * 27 26 25 30 30 H 1.09006 * 109.47664 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47110 * 299.99782 * 1 2 3 32 32 H 1.08997 * 109.47627 * 59.99924 * 1 2 3 33 33 H 0.97000 * 120.00054 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.88629 * 100.02779 * 10 8 7 35 35 H 1.09005 * 109.88133 * 338.86162 * 10 8 7 36 36 H 0.96998 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.36600 * 142.96818 * 20 11 10 38 38 H 1.08994 * 110.36799 * 265.28883 * 20 11 10 39 39 H 1.08995 * 109.47806 * 58.54733 * 23 21 20 40 40 H 1.09003 * 109.46981 * 178.54658 * 23 21 20 41 41 H 1.09005 * 109.47579 * 298.54167 * 23 21 20 42 42 H 1.07994 * 125.89600 * 359.97438 * 25 24 3 43 43 H 1.08998 * 109.47380 * 270.02593 * 28 27 26 44 44 H 1.08997 * 109.47292 * 30.02774 * 28 27 26 45 45 H 1.08998 * 109.47028 * 150.02631 * 28 27 26 46 46 H 1.08000 * 126.12408 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8580 3.4583 -3.0498 9 1 2.0880 3.0482 -3.7033 10 6 4.2644 3.0692 -3.5518 11 7 4.7671 4.1927 -4.3560 12 6 5.9916 4.2525 -4.9661 13 1 6.2359 5.0876 -5.6058 14 6 6.9188 3.2398 -4.7622 15 7 6.5751 2.1567 -4.0979 16 14 8.6543 3.4140 -5.4308 17 1 9.5413 3.9558 -4.3701 18 1 9.1543 2.0841 -5.8625 19 1 8.6472 4.3406 -6.5911 20 6 3.7342 5.2437 -4.3975 21 6 2.8770 5.0078 -3.1289 22 1 3.3548 5.4381 -2.2489 23 6 1.4641 5.5659 -3.3102 24 6 3.3386 1.2637 0.7103 25 6 4.2898 0.2423 0.6177 26 7 5.3093 0.5637 1.3721 27 7 5.0345 1.7968 1.9773 28 6 5.9110 2.5158 2.9052 29 6 3.8195 2.2051 1.5551 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8469 3.6153 -0.9324 34 1 4.2033 2.1713 -4.1667 35 1 4.9260 2.8955 -2.7032 36 1 7.2229 1.4489 -3.9558 37 1 4.1958 6.2307 -4.3653 38 1 3.1225 5.1393 -5.2936 39 1 0.9926 5.0893 -4.1697 40 1 0.8760 5.3639 -2.4149 41 1 1.5168 6.6421 -3.4751 42 1 4.1993 -0.6552 0.0240 43 1 5.6898 2.2075 3.9269 44 1 6.9512 2.2868 2.6737 45 1 5.7443 3.5884 2.8052 46 1 3.3203 3.1193 1.8406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208149949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:12 Heat of formation + Delta-G solvation = 6.177270 kcal Electronic energy + Delta-G solvation = -28512.907636 eV Core-core repulsion = 24632.666571 eV Total energy + Delta-G solvation = -3880.241065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.30621 -40.94476 -39.41530 -38.05097 -35.61059 -34.50503 -34.09054 -32.36851 -32.09990 -29.80377 -28.88961 -27.40816 -27.15588 -26.42485 -25.08956 -22.64323 -22.07571 -21.68923 -21.50970 -20.77986 -18.89180 -18.51657 -18.06531 -17.62276 -16.91080 -16.84425 -16.38496 -16.17213 -15.76335 -15.63060 -15.26007 -15.14363 -14.84635 -14.59357 -14.12846 -14.03975 -13.92869 -13.73084 -13.53993 -13.40407 -13.34293 -13.07836 -12.96900 -12.87871 -12.59860 -12.32909 -12.18294 -12.01797 -11.87950 -11.65757 -11.54154 -11.51858 -11.43582 -10.75678 -10.46060 -10.35192 -9.94186 -9.39841 -8.93606 -7.86787 -5.24346 0.90542 1.40585 1.43169 1.49717 1.52882 1.66794 1.85451 2.16684 2.46953 2.97236 3.30902 3.58402 3.66846 3.74757 3.89160 3.96374 4.07237 4.11637 4.13312 4.24307 4.32667 4.48831 4.52407 4.57224 4.63085 4.64242 4.73207 4.75577 4.84542 4.89734 4.90073 4.92552 5.09736 5.10698 5.26481 5.33091 5.42934 5.53191 5.53422 5.63103 5.81241 6.08479 6.14738 6.18085 6.66530 6.70640 7.04096 7.37364 7.74937 8.38860 9.21783 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.004776 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.866268 B = 5861.547295 C = 7250.026198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.382 6.382 3 C 0.173 3.827 4 H 0.138 0.862 5 C 0.489 3.511 6 O -0.579 6.579 7 N -0.693 5.693 8 C 0.138 3.862 9 H 0.069 0.931 10 C 0.192 3.808 11 N -0.628 5.628 12 C -0.242 4.242 13 H 0.089 0.911 14 C -0.069 4.069 15 N -0.949 5.949 16 Si 0.977 3.023 17 H -0.284 1.284 18 H -0.301 1.301 19 H -0.261 1.261 20 C 0.131 3.869 21 C -0.090 4.090 22 H 0.095 0.905 23 C -0.128 4.128 24 C -0.262 4.262 25 C 0.058 3.942 26 N -0.339 5.339 27 N -0.373 5.373 28 C 0.091 3.909 29 C 0.094 3.906 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.412 0.588 34 H -0.022 1.022 35 H 0.014 0.986 36 H 0.241 0.759 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.163 0.837 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 7.947 18.297 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.110 3.890 4 H 0.155 0.845 5 C 0.276 3.724 6 O -0.458 6.458 7 N -0.346 5.346 8 C 0.031 3.969 9 H 0.087 0.913 10 C 0.065 3.935 11 N -0.355 5.355 12 C -0.371 4.371 13 H 0.107 0.893 14 C -0.262 4.262 15 N -0.598 5.598 16 Si 0.805 3.195 17 H -0.211 1.211 18 H -0.228 1.228 19 H -0.185 1.185 20 C 0.006 3.994 21 C -0.110 4.110 22 H 0.113 0.887 23 C -0.186 4.186 24 C -0.274 4.274 25 C -0.127 4.127 26 N -0.161 5.161 27 N -0.154 5.154 28 C -0.048 4.048 29 C -0.054 4.054 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.249 0.751 34 H -0.004 1.004 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.180 0.820 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.140 0.860 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.808 6.854 18.162 22.721 hybrid contribution 0.652 -0.388 -1.050 1.296 sum -11.156 6.466 17.112 21.426 Atomic orbital electron populations 1.23041 0.79048 1.04139 1.00867 1.87986 1.21827 1.25854 1.94270 1.19889 0.92919 0.87320 0.88840 0.84501 1.22052 0.75983 0.81437 0.92978 1.90690 1.52592 1.54508 1.48005 1.45641 1.66507 1.14387 1.08033 1.22008 0.95994 0.95592 0.83275 0.91269 1.21056 0.90968 0.88559 0.92871 1.44759 1.14614 1.16315 1.59776 1.19509 0.89541 1.05784 1.22301 0.89314 1.25750 1.02498 0.96370 1.01565 1.70291 1.34042 1.08005 1.47461 0.85074 0.79753 0.76519 0.78132 1.21125 1.22841 1.18536 1.21884 0.89584 0.92198 0.95783 1.22527 0.97888 0.91798 0.98779 0.88694 1.21658 0.92978 1.01569 1.02366 1.19568 0.98790 0.99424 1.09657 1.23686 0.91415 1.00236 0.97381 1.77359 1.23746 0.99584 1.15427 1.48848 1.15090 1.15613 1.35856 1.22269 0.93799 0.97310 0.91424 1.22926 0.86893 1.00496 0.95104 0.88607 0.90709 0.94711 0.75081 1.00362 0.96798 0.94963 0.92477 0.95930 0.93412 0.90544 0.90357 0.81969 0.88420 0.90392 0.85954 0.74932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.81 113.37 1.23 1.73 16 2 O -0.38 -11.14 9.66 -129.99 -1.26 -12.39 16 3 C 0.17 4.43 2.95 29.10 0.09 4.51 16 4 H 0.14 2.01 7.78 -2.39 -0.02 2.00 16 5 C 0.49 17.08 7.12 87.66 0.62 17.70 16 6 O -0.58 -26.89 16.24 15.97 0.26 -26.63 16 7 N -0.69 -21.71 5.08 -436.92 -2.22 -23.93 16 8 C 0.14 5.35 2.70 46.18 0.12 5.47 16 9 H 0.07 2.94 7.58 -2.39 -0.02 2.92 16 10 C 0.19 10.35 5.13 86.73 0.44 10.79 16 11 N -0.63 -33.49 3.39 -691.99 -2.35 -35.84 16 12 C -0.24 -14.08 10.26 84.03 0.86 -13.22 16 13 H 0.09 4.83 7.84 -2.91 -0.02 4.81 16 14 C -0.07 -4.15 5.48 84.86 0.46 -3.68 16 15 N -0.95 -62.15 10.36 21.65 0.22 -61.92 16 16 Si 0.98 48.01 29.56 68.60 2.03 50.04 16 17 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.13 5.17 6.70 86.86 0.58 5.75 16 21 C -0.09 -2.74 3.25 -9.40 -0.03 -2.77 16 22 H 0.09 2.58 8.00 -2.39 -0.02 2.56 16 23 C -0.13 -2.73 9.30 71.98 0.67 -2.07 16 24 C -0.26 -7.12 5.06 -20.14 -0.10 -7.22 16 25 C 0.06 2.04 11.71 85.24 1.00 3.04 16 26 N -0.34 -11.63 12.58 -57.03 -0.72 -12.35 16 27 N -0.37 -8.90 4.01 -369.57 -1.48 -10.39 16 28 C 0.09 1.24 11.47 127.77 1.47 2.71 16 29 C 0.09 1.82 11.40 83.54 0.95 2.77 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.41 9.37 8.52 -92.71 -0.79 8.58 16 34 H -0.02 -1.45 7.61 -2.39 -0.02 -1.46 16 35 H 0.01 0.84 7.18 -2.38 -0.02 0.82 16 36 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 38 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 39 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -93.89 383.85 3.04 -90.85 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.19 Total: 17.04 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 8.37 Total: 25.52 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -6.55 Total: -144.43 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.00 Total: -39.02 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -93.89 3.04 -90.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208149949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.031 kcal (2) G-P(sol) polarization free energy of solvation -93.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds