Wall clock time and date at job start Tue Mar 31 2020 14:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47000 * 2 1 4 4 O 1.21300 * 119.99651 * 359.97438 * 3 2 1 5 5 C 1.46783 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.40033 * 120.19900 * 0.25226 * 5 3 2 7 7 C 1.38123 * 119.82074 * 180.30091 * 6 5 3 8 8 O 1.35987 * 119.88513 * 179.69800 * 7 6 5 9 9 C 1.39047 * 120.22490 * 359.71861 * 7 6 5 10 10 C 1.38022 * 120.40255 * 0.02562 * 9 7 6 11 11 C 1.38666 * 120.17378 * 359.97438 * 10 9 7 12 12 O 1.35680 * 120.11242 * 180.02562 * 11 10 9 13 13 C 1.42905 * 116.99784 * 5.84085 * 12 11 10 14 14 H 1.08998 * 109.47237 * 35.56770 * 13 12 11 15 15 C 1.50694 * 109.46994 * 275.56264 * 13 12 11 16 16 H 1.08002 * 119.99672 * 122.73582 * 15 13 12 17 17 C 1.37878 * 120.00425 * 302.73938 * 15 13 12 18 18 N 1.31513 * 119.99560 * 357.83230 * 17 15 13 19 19 Si 1.86801 * 120.00020 * 177.83038 * 17 15 13 20 20 H 1.48494 * 109.47128 * 94.99177 * 19 17 15 21 21 H 1.48506 * 109.46820 * 214.99052 * 19 17 15 22 22 H 1.48502 * 109.47349 * 334.99033 * 19 17 15 23 23 C 1.53000 * 109.46876 * 155.56794 * 13 12 11 24 24 N 1.46908 * 109.46905 * 294.15364 * 23 13 12 25 25 C 1.46905 * 109.46957 * 64.31094 * 24 23 13 26 26 C 1.46895 * 109.46884 * 184.30871 * 24 23 13 27 27 C 1.46897 * 109.47092 * 304.30955 * 24 23 13 28 28 H 1.09002 * 109.47178 * 300.00362 * 1 2 3 29 29 H 1.08998 * 109.46819 * 60.00439 * 1 2 3 30 30 H 1.09004 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47040 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.46819 * 119.99561 * 2 1 3 33 33 H 1.08001 * 120.08856 * 0.02562 * 6 5 3 34 34 H 0.96700 * 113.99757 * 270.02117 * 8 7 6 35 35 H 1.07998 * 119.79167 * 179.97438 * 9 7 6 36 36 H 1.08004 * 119.90811 * 179.97438 * 10 9 7 37 37 H 0.97004 * 119.99699 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47484 * 54.15036 * 23 13 12 39 39 H 1.08994 * 109.47121 * 174.15856 * 23 13 12 40 40 H 1.08994 * 109.46991 * 51.21614 * 25 24 23 41 41 H 1.09003 * 109.47021 * 171.21889 * 25 24 23 42 42 H 1.09007 * 109.46873 * 291.21363 * 25 24 23 43 43 H 1.08992 * 109.47388 * 60.00323 * 26 24 23 44 44 H 1.09006 * 109.47167 * 180.02562 * 26 24 23 45 45 H 1.08999 * 109.47296 * 299.99475 * 26 24 23 46 46 H 1.09005 * 109.47341 * 60.00033 * 27 24 23 47 47 H 1.08998 * 109.46979 * 179.97438 * 27 24 23 48 48 H 1.09001 * 109.47325 * 300.00259 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4755 1.6891 0.0006 6 6 4.3892 0.6279 -0.0042 7 6 5.7454 0.8893 0.0026 8 8 6.6339 -0.1403 0.0042 9 6 6.2054 2.2015 0.0084 10 6 5.3131 3.2544 0.0078 11 6 3.9480 3.0111 0.0010 12 8 3.0719 4.0472 -0.0001 13 6 3.6208 5.3608 -0.1236 14 1 4.4860 5.3323 -0.7859 15 6 4.0440 5.8580 1.2346 16 1 5.0667 6.1611 1.4040 17 6 3.1258 5.9258 2.2609 18 7 1.8711 5.5971 2.0434 19 14 3.6640 6.4845 3.9602 20 1 3.4062 7.9395 4.1076 21 1 2.8986 5.7392 4.9917 22 1 5.1149 6.2190 4.1322 23 6 2.5642 6.3024 -0.7049 24 7 2.2537 5.8989 -2.0829 25 6 1.6427 4.5630 -2.0760 26 6 1.3171 6.8627 -2.6760 27 6 3.4908 5.8676 -2.8745 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0343 -0.3921 -0.0088 34 1 6.8865 -0.4404 0.8881 35 1 7.2674 2.3978 0.0142 36 1 5.6791 4.2705 0.0127 37 1 1.2250 5.6452 2.7653 38 1 1.6596 6.2519 -0.0990 39 1 2.9466 7.3231 -0.7026 40 1 0.8155 4.5455 -1.3666 41 1 1.2711 4.3283 -3.0735 42 1 2.3885 3.8239 -1.7829 43 1 1.7704 7.8538 -2.6811 44 1 1.0863 6.5631 -3.6983 45 1 0.3992 6.8859 -2.0887 46 1 4.1858 5.1524 -2.4343 47 1 3.2604 5.5677 -3.8968 48 1 3.9442 6.8588 -2.8795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234072071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:00 Heat of formation + Delta-G solvation = 14.897855 kcal Electronic energy + Delta-G solvation = -29957.746959 eV Core-core repulsion = 26097.361468 eV Total energy + Delta-G solvation = -3860.385491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33791 -41.21338 -39.51007 -39.09332 -36.58863 -34.61919 -33.71906 -32.21724 -31.62929 -30.40286 -30.17223 -29.37651 -27.84060 -26.23212 -25.08326 -24.33737 -23.04021 -22.18960 -20.50975 -19.34936 -18.97467 -18.78700 -18.47549 -18.15633 -17.43543 -17.04700 -16.72191 -16.25274 -16.13586 -15.67545 -15.55425 -15.38960 -15.04280 -14.83769 -14.71964 -14.47895 -14.19649 -14.06680 -13.97647 -13.77547 -13.66964 -13.46514 -13.30861 -13.17477 -13.12515 -12.90699 -12.46933 -12.42215 -12.32781 -12.16515 -11.97107 -11.69655 -11.54365 -11.21703 -10.77663 -10.22744 -10.14398 -9.89643 -8.69571 -7.75464 -6.00187 -0.09176 0.35495 0.54423 1.70056 2.07828 2.23761 2.25488 2.27755 2.37631 2.39879 2.63801 2.84422 2.99942 3.16114 3.23167 3.25789 3.43164 3.46852 3.53041 3.67746 3.71940 3.72806 3.79072 3.91665 3.97920 4.09706 4.13913 4.20436 4.22999 4.28620 4.32767 4.48686 4.49585 4.54989 4.78184 4.90245 4.97994 5.00708 5.07319 5.10858 5.19822 5.38625 5.51964 5.54376 5.77065 6.05521 6.22420 6.72988 6.86438 6.95509 7.18177 7.84766 9.25596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C 0.392 3.608 4 O -0.427 6.427 5 C -0.210 4.210 6 C -0.065 4.065 7 C 0.039 3.961 8 O -0.498 6.498 9 C -0.074 4.074 10 C -0.201 4.201 11 C 0.201 3.799 12 O -0.268 6.268 13 C 0.186 3.814 14 H 0.046 0.954 15 C -0.573 4.573 16 H 0.078 0.922 17 C 0.093 3.907 18 N -0.845 5.845 19 Si 0.901 3.099 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C 0.002 3.998 24 N -0.273 5.273 25 C -0.037 4.037 26 C -0.040 4.040 27 C -0.047 4.047 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.386 0.614 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.279 0.721 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 1.025 -14.374 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.208 4.208 3 C 0.268 3.732 4 O -0.301 6.301 5 C -0.212 4.212 6 C -0.084 4.084 7 C -0.005 4.005 8 O -0.307 6.307 9 C -0.093 4.093 10 C -0.219 4.219 11 C 0.152 3.848 12 O -0.179 6.179 13 C 0.132 3.868 14 H 0.064 0.936 15 C -0.610 4.610 16 H 0.097 0.903 17 C -0.119 4.119 18 N -0.477 5.477 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.117 4.117 24 N 0.068 4.932 25 C -0.178 4.178 26 C -0.182 4.182 27 C -0.189 4.189 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.241 0.759 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.128 0.872 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.062 1.587 -14.892 15.117 hybrid contribution 0.701 0.141 1.744 1.885 sum -1.360 1.728 -13.147 13.330 Atomic orbital electron populations 1.21564 0.93644 1.01663 1.03000 1.21985 0.98305 0.96310 1.04202 1.22080 0.87387 0.90995 0.72693 1.90561 1.57635 1.47062 1.34873 1.19800 0.95514 0.90788 1.15131 1.21474 0.91949 0.98784 0.96186 1.18144 0.88134 0.87038 1.07231 1.84895 1.62101 1.50197 1.33553 1.21494 1.00443 0.91674 0.95672 1.21312 0.91995 1.00531 1.08087 1.19174 0.88873 0.87713 0.89050 1.86469 1.33845 1.14113 1.83492 1.20434 0.89160 0.79188 0.98042 0.93629 1.21160 0.97727 1.48879 0.93197 0.90350 1.25031 0.94618 0.92130 1.00145 1.69680 1.02209 1.41244 1.34573 0.86371 0.79755 0.79227 0.82011 1.19753 1.20229 1.19111 1.24849 1.08649 1.02159 0.76001 1.46429 1.14066 1.15521 1.17185 1.24360 1.04987 0.82235 1.06227 1.23988 0.96456 0.95049 1.02698 1.24049 0.87579 1.08650 0.98600 0.91981 0.92358 0.92270 0.88856 0.88797 0.84525 0.75903 0.85204 0.83799 0.91081 0.82436 0.85940 0.85451 0.88676 0.85346 0.86884 0.87266 0.86486 0.86570 0.87167 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 9.20 37.16 0.34 0.29 16 2 C -0.17 0.03 5.03 -27.88 -0.14 -0.11 16 3 C 0.39 0.93 7.11 -30.85 -0.22 0.71 16 4 O -0.43 -1.89 13.47 -16.41 -0.22 -2.11 16 5 C -0.21 -0.52 5.88 -104.96 -0.62 -1.13 16 6 C -0.07 -0.08 9.40 -38.95 -0.37 -0.45 16 7 C 0.04 0.07 6.69 -39.32 -0.26 -0.19 16 8 O -0.50 -0.57 13.50 -19.70 -0.27 -0.83 16 9 C -0.07 -0.12 9.97 -39.36 -0.39 -0.52 16 10 C -0.20 -0.44 8.68 -39.50 -0.34 -0.78 16 11 C 0.20 0.60 6.09 -38.61 -0.24 0.36 16 12 O -0.27 -0.72 4.11 -40.69 -0.17 -0.89 16 13 C 0.19 0.18 1.37 -27.89 -0.04 0.15 16 14 H 0.05 -0.07 4.12 -51.93 -0.21 -0.29 16 15 C -0.57 -3.69 7.91 -34.44 -0.27 -3.96 16 16 H 0.08 0.57 7.81 -52.49 -0.41 0.16 16 17 C 0.09 0.82 5.25 -17.82 -0.09 0.73 16 18 N -0.84 -7.79 10.99 55.43 0.61 -7.18 16 19 Si 0.90 8.22 29.54 -169.99 -5.02 3.20 16 20 H -0.27 -2.56 7.11 56.52 0.40 -2.16 16 21 H -0.28 -2.96 7.11 56.52 0.40 -2.56 16 22 H -0.27 -2.62 7.11 56.52 0.40 -2.22 16 23 C 0.00 -0.01 3.58 -3.82 -0.01 -0.02 16 24 N -0.27 2.35 0.05 -395.62 -0.02 2.34 16 25 C -0.04 0.24 6.56 60.07 0.39 0.63 16 26 C -0.04 0.46 8.00 60.06 0.48 0.94 16 27 C -0.05 0.49 7.54 60.06 0.45 0.94 16 28 H 0.06 0.13 8.10 -51.93 -0.42 -0.29 16 29 H 0.06 0.02 8.10 -51.93 -0.42 -0.40 16 30 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.09 -0.19 8.08 -51.93 -0.42 -0.61 16 32 H 0.09 -0.07 8.09 -51.93 -0.42 -0.50 16 33 H 0.14 -0.10 7.05 -52.49 -0.37 -0.47 16 34 H 0.39 -1.12 9.06 45.56 0.41 -0.71 16 35 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 36 H 0.14 0.24 5.66 -52.48 -0.30 -0.06 16 37 H 0.28 2.83 8.31 -40.82 -0.34 2.49 16 38 H 0.16 0.02 6.22 -51.93 -0.32 -0.30 16 39 H 0.12 -0.56 8.10 -51.93 -0.42 -0.99 16 40 H 0.13 -0.47 7.65 -51.93 -0.40 -0.87 16 41 H 0.09 -0.90 8.02 -51.93 -0.42 -1.31 16 42 H 0.13 -0.48 4.72 -51.93 -0.25 -0.73 16 43 H 0.11 -1.40 8.12 -51.93 -0.42 -1.83 16 44 H 0.11 -1.45 8.08 -51.93 -0.42 -1.87 16 45 H 0.12 -1.24 8.14 -51.93 -0.42 -1.66 16 46 H 0.12 -0.99 5.88 -51.93 -0.31 -1.30 16 47 H 0.11 -1.38 8.14 -51.93 -0.42 -1.81 16 48 H 0.12 -1.36 8.14 -51.93 -0.42 -1.78 16 LS Contribution 373.02 15.07 5.62 5.62 Total: 0.00 -17.60 373.02 -7.55 -25.15 By element: Atomic # 1 Polarization: -16.13 SS G_CDS: -6.76 Total: -22.89 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.32 Total: -2.42 kcal Atomic # 7 Polarization: -5.43 SS G_CDS: 0.59 Total: -4.84 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.65 Total: -3.83 kcal Atomic # 14 Polarization: 8.22 SS G_CDS: -5.02 Total: 3.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -17.60 -7.55 -25.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234072071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.043 kcal (2) G-P(sol) polarization free energy of solvation -17.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds