Wall clock time and date at job start Tue Mar 31 2020 14:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47000 * 2 1 4 4 O 1.21300 * 119.99651 * 359.97438 * 3 2 1 5 5 C 1.46783 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.40033 * 120.19900 * 0.25226 * 5 3 2 7 7 C 1.38123 * 119.82074 * 180.30091 * 6 5 3 8 8 O 1.35987 * 119.88513 * 179.69800 * 7 6 5 9 9 C 1.39047 * 120.22490 * 359.71861 * 7 6 5 10 10 C 1.38022 * 120.40255 * 0.02562 * 9 7 6 11 11 C 1.38666 * 120.17378 * 359.97438 * 10 9 7 12 12 O 1.35680 * 120.11242 * 180.02562 * 11 10 9 13 13 C 1.42905 * 116.99784 * 5.84085 * 12 11 10 14 14 H 1.08998 * 109.47237 * 35.56770 * 13 12 11 15 15 C 1.50694 * 109.46994 * 275.56264 * 13 12 11 16 16 H 1.08002 * 119.99672 * 122.73582 * 15 13 12 17 17 C 1.37878 * 120.00425 * 302.73938 * 15 13 12 18 18 N 1.31513 * 119.99560 * 357.83230 * 17 15 13 19 19 Si 1.86801 * 120.00020 * 177.83038 * 17 15 13 20 20 H 1.48494 * 109.47128 * 94.99177 * 19 17 15 21 21 H 1.48506 * 109.46820 * 214.99052 * 19 17 15 22 22 H 1.48502 * 109.47349 * 334.99033 * 19 17 15 23 23 C 1.53000 * 109.46876 * 155.56794 * 13 12 11 24 24 N 1.46908 * 109.46905 * 294.15364 * 23 13 12 25 25 C 1.46905 * 109.46957 * 64.31094 * 24 23 13 26 26 C 1.46895 * 109.46884 * 184.30871 * 24 23 13 27 27 C 1.46897 * 109.47092 * 304.30955 * 24 23 13 28 28 H 1.09002 * 109.47178 * 300.00362 * 1 2 3 29 29 H 1.08998 * 109.46819 * 60.00439 * 1 2 3 30 30 H 1.09004 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47040 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.46819 * 119.99561 * 2 1 3 33 33 H 1.08001 * 120.08856 * 0.02562 * 6 5 3 34 34 H 0.96700 * 113.99757 * 270.02117 * 8 7 6 35 35 H 1.07998 * 119.79167 * 179.97438 * 9 7 6 36 36 H 1.08004 * 119.90811 * 179.97438 * 10 9 7 37 37 H 0.97004 * 119.99699 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47484 * 54.15036 * 23 13 12 39 39 H 1.08994 * 109.47121 * 174.15856 * 23 13 12 40 40 H 1.08994 * 109.46991 * 51.21614 * 25 24 23 41 41 H 1.09003 * 109.47021 * 171.21889 * 25 24 23 42 42 H 1.09007 * 109.46873 * 291.21363 * 25 24 23 43 43 H 1.08992 * 109.47388 * 60.00323 * 26 24 23 44 44 H 1.09006 * 109.47167 * 180.02562 * 26 24 23 45 45 H 1.08999 * 109.47296 * 299.99475 * 26 24 23 46 46 H 1.09005 * 109.47341 * 60.00033 * 27 24 23 47 47 H 1.08998 * 109.46979 * 179.97438 * 27 24 23 48 48 H 1.09001 * 109.47325 * 300.00259 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4755 1.6891 0.0006 6 6 4.3892 0.6279 -0.0042 7 6 5.7454 0.8893 0.0026 8 8 6.6339 -0.1403 0.0042 9 6 6.2054 2.2015 0.0084 10 6 5.3131 3.2544 0.0078 11 6 3.9480 3.0111 0.0010 12 8 3.0719 4.0472 -0.0001 13 6 3.6208 5.3608 -0.1236 14 1 4.4860 5.3323 -0.7859 15 6 4.0440 5.8580 1.2346 16 1 5.0667 6.1611 1.4040 17 6 3.1258 5.9258 2.2609 18 7 1.8711 5.5971 2.0434 19 14 3.6640 6.4845 3.9602 20 1 3.4062 7.9395 4.1076 21 1 2.8986 5.7392 4.9917 22 1 5.1149 6.2190 4.1322 23 6 2.5642 6.3024 -0.7049 24 7 2.2537 5.8989 -2.0829 25 6 1.6427 4.5630 -2.0760 26 6 1.3171 6.8627 -2.6760 27 6 3.4908 5.8676 -2.8745 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0343 -0.3921 -0.0088 34 1 6.8865 -0.4404 0.8881 35 1 7.2674 2.3978 0.0142 36 1 5.6791 4.2705 0.0127 37 1 1.2250 5.6452 2.7653 38 1 1.6596 6.2519 -0.0990 39 1 2.9466 7.3231 -0.7026 40 1 0.8155 4.5455 -1.3666 41 1 1.2711 4.3283 -3.0735 42 1 2.3885 3.8239 -1.7829 43 1 1.7704 7.8538 -2.6811 44 1 1.0863 6.5631 -3.6983 45 1 0.3992 6.8859 -2.0887 46 1 4.1858 5.1524 -2.4343 47 1 3.2604 5.5677 -3.8968 48 1 3.9442 6.8588 -2.8795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234072071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:59 Heat of formation + Delta-G solvation = 10.673881 kcal Electronic energy + Delta-G solvation = -29957.930125 eV Core-core repulsion = 26097.361468 eV Total energy + Delta-G solvation = -3860.568657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83949 -41.26820 -39.65132 -39.15886 -36.69238 -35.05203 -33.79442 -32.33656 -31.65022 -29.74195 -29.54156 -29.30582 -27.91165 -26.32533 -25.07436 -24.19299 -23.00260 -22.21693 -20.59461 -19.55437 -18.95351 -18.61108 -17.94315 -17.66270 -17.54818 -17.07574 -16.77785 -16.56358 -16.30083 -15.75649 -15.69652 -15.48679 -15.02839 -14.61965 -14.53517 -14.18685 -13.94469 -13.69464 -13.50152 -13.32255 -13.27751 -13.24120 -13.17647 -13.12821 -13.01997 -12.98344 -12.91928 -12.74964 -12.57777 -12.48786 -12.20824 -11.98079 -11.69015 -11.35093 -11.08539 -10.85465 -10.33159 -10.02145 -8.84994 -8.37747 -6.57383 -0.22020 0.43115 0.98355 1.28805 1.41562 1.46334 1.57406 2.24355 2.41590 2.73746 2.82870 3.03771 3.08533 3.17223 3.25084 3.42616 3.84348 3.93312 4.04167 4.08783 4.17129 4.17969 4.26861 4.28466 4.30339 4.30587 4.43729 4.45458 4.46600 4.56091 4.59538 4.71457 4.75283 4.76977 4.87050 4.92211 4.99184 5.01613 5.08999 5.11315 5.14633 5.34339 5.42294 5.43612 5.54244 5.69785 5.74140 6.38571 6.79367 6.82570 6.93664 7.25612 8.58105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 C 0.388 3.612 4 O -0.455 6.455 5 C -0.223 4.223 6 C -0.061 4.061 7 C 0.034 3.966 8 O -0.507 6.507 9 C -0.078 4.078 10 C -0.207 4.207 11 C 0.184 3.816 12 O -0.271 6.271 13 C 0.179 3.821 14 H 0.074 0.926 15 C -0.567 4.567 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.856 5.856 19 Si 0.914 3.086 20 H -0.276 1.276 21 H -0.303 1.303 22 H -0.277 1.277 23 C 0.018 3.982 24 N -0.260 5.260 25 C -0.032 4.032 26 C -0.043 4.043 27 C -0.053 4.053 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.403 0.597 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.142 0.858 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 0.581 -17.416 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.266 3.734 4 O -0.331 6.331 5 C -0.225 4.225 6 C -0.080 4.080 7 C -0.010 4.010 8 O -0.319 6.319 9 C -0.097 4.097 10 C -0.226 4.226 11 C 0.134 3.866 12 O -0.182 6.182 13 C 0.125 3.875 14 H 0.092 0.908 15 C -0.605 4.605 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.491 5.491 19 Si 0.743 3.257 20 H -0.201 1.201 21 H -0.230 1.230 22 H -0.202 1.202 23 C -0.102 4.102 24 N 0.083 4.917 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.193 4.193 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.176 0.824 34 H 0.261 0.739 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.121 0.879 43 H 0.149 0.851 44 H 0.158 0.842 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.161 0.839 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.448 1.143 -17.933 18.027 hybrid contribution 0.629 0.219 2.652 2.734 sum -0.819 1.362 -15.281 15.363 Atomic orbital electron populations 1.21545 0.94177 1.02220 1.01765 1.22015 0.97771 0.94782 1.05779 1.22492 0.87280 0.91896 0.71703 1.90561 1.58170 1.48105 1.36263 1.19970 0.95899 0.91015 1.15572 1.21668 0.91644 0.99448 0.95225 1.18244 0.88481 0.87226 1.07084 1.84846 1.61911 1.49899 1.35232 1.21672 1.01030 0.91687 0.95268 1.21339 0.91856 1.00795 1.08599 1.19456 0.89292 0.88254 0.89569 1.86510 1.33698 1.14318 1.83678 1.20557 0.92043 0.78787 0.96133 0.90849 1.21428 0.96617 1.46769 0.95681 0.91605 1.25173 0.95088 0.93404 1.00017 1.69788 1.02014 1.43931 1.33323 0.86236 0.78344 0.78499 0.82573 1.20149 1.23047 1.20202 1.24129 1.05722 1.01593 0.78795 1.46036 1.15616 1.15206 1.14887 1.24169 1.03157 0.82640 1.07402 1.24204 0.95344 0.95081 1.03657 1.24276 0.86150 1.09442 0.99477 0.94318 0.92543 0.90704 0.86302 0.87872 0.82449 0.73904 0.84011 0.83755 0.92606 0.85735 0.84092 0.88665 0.84935 0.87901 0.85112 0.84185 0.87656 0.88568 0.83941 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.15 9.20 71.98 0.66 0.51 16 2 C -0.17 0.12 5.03 29.85 0.15 0.27 16 3 C 0.39 2.20 7.11 27.92 0.20 2.40 16 4 O -0.46 -4.95 13.47 17.89 0.24 -4.71 16 5 C -0.22 -1.23 5.88 -20.08 -0.12 -1.35 16 6 C -0.06 -0.13 9.40 22.68 0.21 0.08 16 7 C 0.03 0.11 6.69 22.44 0.15 0.26 16 8 O -0.51 -0.64 13.50 -93.40 -1.26 -1.90 16 9 C -0.08 -0.26 9.97 22.41 0.22 -0.04 16 10 C -0.21 -1.04 8.68 22.32 0.19 -0.84 16 11 C 0.18 1.29 6.09 22.90 0.14 1.43 16 12 O -0.27 -1.88 4.11 -68.99 -0.28 -2.17 16 13 C 0.18 0.52 1.37 29.85 0.04 0.56 16 14 H 0.07 -0.23 4.12 -2.39 -0.01 -0.24 16 15 C -0.57 -8.25 7.91 25.60 0.20 -8.04 16 16 H 0.07 1.07 7.81 -2.91 -0.02 1.05 16 17 C 0.07 1.45 5.25 84.66 0.44 1.89 16 18 N -0.86 -18.41 10.99 21.45 0.24 -18.17 16 19 Si 0.91 19.33 29.54 68.60 2.03 21.36 16 20 H -0.28 -5.83 7.11 99.48 0.71 -5.12 16 21 H -0.30 -7.62 7.11 99.48 0.71 -6.92 16 22 H -0.28 -6.14 7.11 99.48 0.71 -5.44 16 23 C 0.02 -0.11 3.58 86.30 0.31 0.20 16 24 N -0.26 4.72 0.05 ******* -0.07 4.65 16 25 C -0.03 0.41 6.56 127.69 0.84 1.25 16 26 C -0.04 1.05 8.00 127.69 1.02 2.07 16 27 C -0.05 1.21 7.54 127.69 0.96 2.17 16 28 H 0.04 0.23 8.10 -2.39 -0.02 0.21 16 29 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 30 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.12 -0.69 8.08 -2.39 -0.02 -0.70 16 32 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 33 H 0.16 -0.45 7.05 -2.91 -0.02 -0.47 16 34 H 0.40 -2.75 9.06 -74.06 -0.67 -3.43 16 35 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 36 H 0.14 0.58 5.66 -2.91 -0.02 0.57 16 37 H 0.26 6.34 8.31 -92.71 -0.77 5.56 16 38 H 0.12 0.28 6.22 -2.39 -0.01 0.26 16 39 H 0.14 -1.39 8.10 -2.39 -0.02 -1.41 16 40 H 0.09 -0.51 7.65 -2.39 -0.02 -0.53 16 41 H 0.13 -2.73 8.02 -2.39 -0.02 -2.75 16 42 H 0.10 -0.68 4.72 -2.38 -0.01 -0.70 16 43 H 0.13 -3.61 8.12 -2.39 -0.02 -3.63 16 44 H 0.14 -4.22 8.08 -2.38 -0.02 -4.24 16 45 H 0.10 -2.26 8.14 -2.39 -0.02 -2.28 16 46 H 0.10 -1.75 5.88 -2.38 -0.01 -1.76 16 47 H 0.14 -4.11 8.14 -2.39 -0.02 -4.13 16 48 H 0.14 -3.60 8.14 -2.39 -0.02 -3.62 16 Total: 0.00 -45.03 373.02 6.82 -38.21 By element: Atomic # 1 Polarization: -40.38 SS G_CDS: 0.30 Total: -40.09 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.63 Total: 2.82 kcal Atomic # 7 Polarization: -13.69 SS G_CDS: 0.17 Total: -13.52 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -1.30 Total: -8.78 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: 2.03 Total: 21.36 kcal Total: -45.03 6.82 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234072071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.882 kcal (2) G-P(sol) polarization free energy of solvation -45.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds