Wall clock time and date at job start Tue Mar 31 2020 12:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46719 * 2 1 4 4 C 1.52994 * 109.46961 * 240.00257 * 2 1 3 5 5 O 1.45202 * 109.47433 * 119.99979 * 2 1 3 6 6 C 1.34643 * 116.99410 * 59.99950 * 5 2 1 7 7 O 1.21503 * 120.00315 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99307 * 180.27361 * 6 5 2 9 9 C 1.38927 * 119.99815 * 179.72699 * 8 6 5 10 10 N 1.31125 * 125.78408 * 179.69737 * 9 8 6 11 11 C 1.34300 * 109.30221 * 179.89431 * 10 9 8 12 12 C 1.34460 * 108.29508 * 0.36550 * 11 10 9 13 13 C 1.50706 * 126.53124 * 179.75763 * 12 11 10 14 14 N 1.46897 * 109.47152 * 265.02555 * 13 12 11 15 15 C 1.47478 * 111.00226 * 265.97039 * 14 13 12 16 16 C 1.53506 * 87.93148 * 221.29626 * 15 14 13 17 17 C 1.50702 * 114.34131 * 139.68438 * 16 15 14 18 18 H 1.07997 * 119.99979 * 266.07407 * 17 16 15 19 19 C 1.37877 * 120.00292 * 86.07716 * 17 16 15 20 20 N 1.31521 * 119.99516 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47092 * 60.00125 * 21 19 17 23 23 H 1.48507 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47517 * 299.99823 * 21 19 17 25 25 C 1.47480 * 110.99796 * 169.99583 * 14 13 12 26 26 N 1.36001 * 125.78386 * 359.97438 * 9 8 6 27 27 H 0.97002 * 126.48315 * 359.97238 * 26 9 8 28 28 H 1.08998 * 109.47018 * 299.99691 * 1 2 3 29 29 H 1.08999 * 109.47044 * 59.99706 * 1 2 3 30 30 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47078 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47603 * 299.99952 * 3 2 1 33 33 H 1.08998 * 109.47123 * 60.00374 * 3 2 1 34 34 H 1.09001 * 109.47516 * 299.99585 * 4 2 1 35 35 H 1.08999 * 109.47211 * 60.00139 * 4 2 1 36 36 H 1.09004 * 109.47317 * 179.97438 * 4 2 1 37 37 H 0.97000 * 120.00483 * 359.73140 * 8 6 5 38 38 H 1.08000 * 125.85862 * 180.15269 * 11 10 9 39 39 H 1.08993 * 109.46645 * 25.02785 * 13 12 11 40 40 H 1.09003 * 109.46746 * 145.02786 * 13 12 11 41 41 H 1.08999 * 113.47823 * 336.06605 * 15 14 13 42 42 H 1.09003 * 113.47538 * 106.53371 * 15 14 13 43 43 H 1.09002 * 114.17297 * 272.37653 * 16 15 14 44 44 H 0.97003 * 119.99636 * 179.97438 * 20 19 17 45 45 H 1.08996 * 113.48093 * 253.47071 * 25 14 13 46 46 H 1.08999 * 113.47503 * 23.88366 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0632 -2.6640 2.4196 9 6 1.6853 -3.9912 2.5801 10 7 2.0228 -4.7689 3.5804 11 6 1.4749 -5.9823 3.4037 12 6 0.7788 -5.9677 2.2535 13 6 0.0055 -7.1162 1.6583 14 7 0.8492 -7.8225 0.6851 15 6 0.6218 -7.3128 -0.6799 16 6 0.6767 -8.7659 -1.1718 17 6 -0.3386 -9.1009 -2.2339 18 1 -1.2906 -9.5280 -1.9553 19 6 -0.0521 -8.8623 -3.5613 20 7 1.1075 -8.3428 -3.9006 21 14 -1.3103 -9.2783 -4.8778 22 1 -2.5549 -8.5055 -4.6348 23 1 -0.7635 -8.9282 -6.2133 24 1 -1.6130 -10.7314 -4.8318 25 6 0.2194 -9.0859 0.2583 26 7 0.9069 -4.7055 1.7237 27 1 0.5162 -4.3851 0.8956 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6228 -2.2351 3.0858 38 1 1.5787 -6.8263 4.0695 39 1 -0.2899 -7.8043 2.4502 40 1 -0.8845 -6.7343 1.1579 41 1 -0.3543 -6.8461 -0.8122 42 1 1.4388 -6.6963 -1.0550 43 1 1.6803 -9.1192 -1.4090 44 1 1.3092 -8.1752 -4.8345 45 1 0.6952 -9.9720 0.6783 46 1 -0.8641 -9.0928 0.3773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249420866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:26 Heat of formation + Delta-G solvation = 1.628666 kcal Electronic energy + Delta-G solvation = -27561.591113 eV Core-core repulsion = 23681.152806 eV Total energy + Delta-G solvation = -3880.438307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32953 -42.01475 -40.57867 -38.72928 -36.44182 -35.05773 -34.79030 -33.59680 -32.33262 -29.37820 -28.44850 -28.35511 -27.20981 -26.56868 -24.98526 -23.83408 -22.33953 -22.15899 -21.22631 -20.50242 -19.45678 -19.12495 -18.58416 -17.76582 -17.61427 -16.85027 -16.74608 -16.39547 -16.09100 -15.92624 -15.64178 -15.38769 -15.31103 -14.66757 -14.58337 -14.18059 -13.92371 -13.45336 -13.42664 -13.34699 -13.10679 -13.03363 -12.98973 -12.84420 -12.73408 -12.55766 -12.47233 -12.14928 -12.02179 -11.76358 -11.57453 -11.43847 -11.22796 -11.17371 -11.06730 -10.87776 -10.52116 -9.74104 -8.93285 -8.16519 -6.28452 0.46924 0.71019 1.41189 1.42422 1.43336 1.51144 1.97283 2.13141 2.41249 2.82409 3.12662 3.39234 3.62452 3.69903 3.80511 3.85145 3.90136 4.10960 4.22862 4.35463 4.44853 4.48655 4.53013 4.55323 4.58098 4.70472 4.70766 4.72669 4.79114 4.83553 4.83599 4.97278 5.09882 5.14931 5.18492 5.19445 5.21238 5.36318 5.48934 5.60882 5.62161 5.82691 5.84165 6.26328 6.31459 6.38423 6.81786 6.81872 6.96572 7.40556 8.92929 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.003396 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.351229 B = 8242.641235 C =10322.450055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.127 3.873 3 C -0.135 4.135 4 C -0.186 4.186 5 O -0.346 6.346 6 C 0.660 3.340 7 O -0.578 6.578 8 N -0.595 5.595 9 C 0.431 3.569 10 N -0.512 5.512 11 C -0.001 4.001 12 C -0.008 4.008 13 C 0.095 3.905 14 N -0.477 5.477 15 C 0.017 3.983 16 C 0.022 3.978 17 C -0.530 4.530 18 H 0.064 0.936 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.958 3.042 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.014 3.986 26 N -0.559 5.559 27 H 0.427 0.573 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.447 0.553 38 H 0.201 0.799 39 H 0.124 0.876 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.082 0.918 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 18.723 11.899 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.091 3.909 3 C -0.191 4.191 4 C -0.244 4.244 5 O -0.259 6.259 6 C 0.414 3.586 7 O -0.467 6.467 8 N -0.255 5.255 9 C 0.079 3.921 10 N -0.239 5.239 11 C -0.149 4.149 12 C -0.124 4.124 13 C -0.034 4.034 14 N -0.200 5.200 15 C -0.112 4.112 16 C 0.003 3.997 17 C -0.568 4.568 18 H 0.082 0.918 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.783 3.217 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.115 4.115 26 N -0.175 5.175 27 H 0.271 0.729 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.289 0.711 38 H 0.218 0.782 39 H 0.142 0.858 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.397 18.934 12.270 22.566 hybrid contribution -1.507 0.009 -2.133 2.612 sum -1.111 18.944 10.136 21.514 Atomic orbital electron populations 1.22513 0.93575 1.03715 1.04205 1.22594 0.94861 0.92858 0.80543 1.21908 1.02719 0.89701 1.04809 1.22537 1.01946 1.02046 0.97831 1.86347 1.70945 1.20690 1.47906 1.17941 0.78168 0.81723 0.80727 1.90801 1.41747 1.70454 1.43651 1.40517 1.53801 1.06642 1.24574 1.18884 0.97437 0.85323 0.90450 1.70309 1.27191 1.03476 1.22964 1.22288 0.99404 0.95325 0.97837 1.21250 1.07719 0.85827 0.97562 1.21128 0.92506 0.92300 0.97514 1.68871 1.42669 1.04493 1.03923 1.23831 0.97377 1.00379 0.89626 1.20014 0.96031 0.91918 0.91751 1.21377 1.01684 1.41938 0.91814 0.91793 1.25873 0.97062 0.94647 1.01080 1.70112 1.23674 1.44518 1.17945 0.85608 0.79143 0.79115 0.77791 1.19419 1.21276 1.19104 1.23849 0.98109 0.93312 0.96199 1.43713 1.40928 1.10642 1.22185 0.72867 0.91087 0.88848 0.92280 0.90868 0.87750 0.90428 0.92566 0.88816 0.91677 0.71057 0.78240 0.85828 0.93398 0.93249 0.95039 0.95449 0.92968 0.89986 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.37 71.98 0.60 -2.60 16 2 C 0.13 2.22 1.13 -10.79 -0.01 2.21 16 3 C -0.13 -1.38 8.85 71.98 0.64 -0.75 16 4 C -0.19 -3.74 8.37 71.98 0.60 -3.14 16 5 O -0.35 -7.17 9.94 -55.52 -0.55 -7.72 16 6 C 0.66 16.87 8.02 129.79 1.04 17.91 16 7 O -0.58 -17.73 9.38 19.83 0.19 -17.55 16 8 N -0.60 -14.33 5.41 -438.04 -2.37 -16.70 16 9 C 0.43 13.06 8.79 260.19 2.29 15.35 16 10 N -0.51 -15.75 11.28 -197.67 -2.23 -17.98 16 11 C 0.00 -0.02 11.77 83.45 0.98 0.96 16 12 C -0.01 -0.25 6.83 40.81 0.28 0.03 16 13 C 0.09 2.98 5.37 85.56 0.46 3.44 16 14 N -0.48 -18.76 6.32 -932.48 -5.89 -24.65 16 15 C 0.02 0.82 7.28 83.58 0.61 1.42 16 16 C 0.02 1.12 3.76 -11.20 -0.04 1.08 16 17 C -0.53 -28.79 8.83 25.60 0.23 -28.57 16 18 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 19 C 0.01 0.70 5.46 84.65 0.46 1.16 16 20 N -0.92 -54.94 13.26 21.45 0.28 -54.66 16 21 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.01 0.54 7.25 83.58 0.61 1.15 16 26 N -0.56 -18.37 5.81 -183.59 -1.07 -19.44 16 27 H 0.43 14.82 6.44 -92.71 -0.60 14.22 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.45 7.96 8.93 -92.71 -0.83 7.13 16 38 H 0.20 4.64 8.06 -2.91 -0.02 4.62 16 39 H 0.12 3.11 8.08 -2.39 -0.02 3.09 16 40 H 0.05 1.53 7.30 -2.39 -0.02 1.52 16 41 H 0.05 2.32 7.38 -2.39 -0.02 2.30 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.07 2.61 7.87 -2.39 -0.02 2.59 16 Total: -1.00 -67.56 375.65 -1.29 -68.85 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.42 Total: 34.98 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 8.74 Total: 9.65 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -11.27 Total: -133.42 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.37 Total: -25.27 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.56 -1.29 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249420866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.480 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds