Wall clock time and date at job start Tue Mar 31 2020 14:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.53933 * 2 1 4 4 C 1.53039 * 109.50537 * 239.89756 * 2 1 3 5 5 N 1.46843 * 109.52391 * 180.87980 * 4 2 1 6 6 C 1.38830 * 111.00172 * 185.84120 * 5 4 2 7 7 C 1.39797 * 119.58085 * 291.84188 * 6 5 4 8 8 C 1.38597 * 119.48732 * 179.97438 * 7 6 5 9 9 C 1.38393 * 118.68296 * 0.02562 * 8 7 6 10 10 C 1.40560 * 119.14599 * 359.97438 * 9 8 7 11 11 C 1.41308 * 119.77961 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00453 * 359.97438 * 11 10 9 13 13 C 1.40037 * 119.99824 * 179.97438 * 11 10 9 14 14 N 1.30743 * 119.99635 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00032 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47317 * 90.00360 * 15 13 11 17 17 H 1.48504 * 109.47422 * 210.00403 * 15 13 11 18 18 H 1.48504 * 109.47471 * 330.00278 * 15 13 11 19 19 N 1.31947 * 119.58109 * 111.56214 * 6 5 4 20 20 C 1.46854 * 111.19690 * 61.74512 * 5 4 2 21 21 C 1.53029 * 109.52283 * 298.25524 * 20 5 4 22 22 C 1.53124 * 109.50053 * 120.09904 * 2 1 3 23 23 H 1.08998 * 109.52745 * 57.68901 * 22 2 1 24 24 C 1.50703 * 109.52100 * 297.49741 * 22 2 1 25 25 C 1.38237 * 120.00018 * 300.04284 * 24 22 2 26 26 C 1.38233 * 119.99778 * 179.74368 * 25 24 22 27 27 C 1.38241 * 119.99771 * 0.55360 * 26 25 24 28 28 C 1.38236 * 120.00154 * 359.70125 * 27 26 25 29 29 C 1.38233 * 119.99675 * 120.32017 * 24 22 2 30 30 H 1.09002 * 109.47076 * 299.90685 * 1 2 3 31 31 H 1.08998 * 109.47161 * 59.90428 * 1 2 3 32 32 H 1.09002 * 109.47464 * 179.89833 * 1 2 3 33 33 H 1.09001 * 109.45805 * 60.87049 * 4 2 1 34 34 H 1.08997 * 109.46104 * 300.89793 * 4 2 1 35 35 H 1.08005 * 120.25852 * 359.94927 * 7 6 5 36 36 H 1.07996 * 120.65653 * 180.02562 * 8 7 6 37 37 H 1.07989 * 120.42587 * 179.97438 * 9 8 7 38 38 H 0.97003 * 119.99785 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.45788 * 178.23958 * 20 5 4 40 40 H 1.09003 * 109.45264 * 58.26841 * 20 5 4 41 41 H 1.08994 * 109.50822 * 299.23828 * 21 20 5 42 42 H 1.09001 * 109.50199 * 179.11868 * 21 20 5 43 43 H 1.08001 * 120.00218 * 0.02562 * 25 24 22 44 44 H 1.07999 * 120.00161 * 180.27511 * 26 25 24 45 45 H 1.08009 * 119.99792 * 179.72463 * 27 26 25 46 46 H 1.07995 * 119.99613 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.00425 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7422 -1.2378 6 6 4.0083 -1.2750 -2.4187 7 6 3.8180 -2.6314 -2.6984 8 6 4.3166 -3.1612 -3.8781 9 6 4.9928 -2.3243 -4.7485 10 6 5.1516 -0.9692 -4.4107 11 6 5.8392 -0.1026 -5.2899 12 1 6.2411 -0.4821 -6.2176 13 6 5.9996 1.2484 -4.9581 14 7 5.5135 1.7078 -3.8347 15 14 6.9092 2.3938 -6.1199 16 1 5.9454 2.9991 -7.0738 17 1 7.5723 3.4680 -5.3377 18 1 7.9333 1.6251 -6.8720 19 7 4.6513 -0.4935 -3.2653 20 6 4.0229 -1.4731 -0.0722 21 6 3.5711 -0.7720 1.2108 22 6 2.0411 -0.7239 1.2488 23 1 1.6451 -1.7392 1.2691 24 6 1.5910 0.0183 2.4807 25 6 1.9753 1.3319 2.6753 26 6 1.5581 2.0143 3.8027 27 6 0.7659 1.3796 4.7412 28 6 0.3860 0.0644 4.5491 29 6 0.7985 -0.6162 3.4189 30 1 -0.3633 0.5124 0.8908 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3634 -1.0277 -0.0018 33 1 1.6906 -0.2023 -2.1389 34 1 1.6647 -1.7465 -1.2543 35 1 3.2870 -3.2618 -2.0004 36 1 4.1801 -4.2063 -4.1134 37 1 5.3932 -2.7075 -5.6753 38 1 5.6249 2.6435 -3.6047 39 1 5.1120 -1.4963 -0.1093 40 1 3.6372 -2.4925 -0.0842 41 1 3.9677 0.2431 1.2299 42 1 3.9394 -1.3235 2.0759 43 1 2.5978 1.8264 1.9443 44 1 1.8547 3.0419 3.9526 45 1 0.4436 1.9114 5.6243 46 1 -0.2325 -0.4315 5.2825 47 1 0.5023 -1.6440 3.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:46 Heat of formation + Delta-G solvation = 59.730997 kcal Electronic energy + Delta-G solvation = -26874.744911 eV Core-core repulsion = 23407.675373 eV Total energy + Delta-G solvation = -3467.069538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.13328 -38.83897 -37.36938 -34.53911 -33.24856 -32.03348 -30.93259 -30.60394 -30.17197 -28.58724 -26.32197 -25.47732 -24.28500 -22.72712 -21.90187 -21.45865 -21.33368 -20.13277 -19.05991 -17.45616 -16.93848 -15.99489 -15.31580 -15.06924 -14.82228 -14.75072 -14.48065 -14.32175 -14.19139 -13.86103 -13.43156 -13.20813 -12.92051 -12.72559 -12.64151 -12.30108 -12.14928 -12.06862 -11.64103 -11.58815 -11.39241 -11.19986 -11.10356 -11.03716 -10.77879 -10.69655 -10.59213 -10.39190 -10.24916 -10.09869 -9.81761 -9.34196 -8.93231 -8.62567 -8.23101 -8.12043 -7.52640 -7.19877 -6.31607 -4.51320 1.35773 1.38798 2.67150 3.00932 3.10365 3.12994 3.19934 3.77604 3.96030 4.38577 4.68739 4.71506 4.75949 4.96152 5.01922 5.13213 5.15752 5.30829 5.44829 5.50366 5.55441 5.66481 5.75847 5.78606 5.83986 5.90784 5.95554 5.98745 6.02847 6.06213 6.11483 6.13329 6.29263 6.30733 6.35971 6.43851 6.45936 6.47556 6.50942 6.57844 6.73008 6.76414 6.87784 6.91239 7.00502 7.22967 7.54155 7.67645 7.73807 7.76927 8.21071 8.32860 8.72075 8.95625 10.15433 10.33894 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003219 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.383091 B = 8696.313096 C = 9722.527234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.082 0.918 4 C 0.080 3.920 5 N -0.485 5.485 6 C 0.322 3.678 7 C -0.346 4.346 8 C -0.050 4.050 9 C -0.286 4.286 10 C 0.261 3.739 11 C -0.428 4.428 12 H 0.084 0.916 13 C 0.067 3.933 14 N -0.701 5.701 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.262 1.262 19 N -0.458 5.458 20 C 0.072 3.928 21 C -0.105 4.105 22 C -0.045 4.045 23 H 0.073 0.927 24 C -0.061 4.061 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.122 4.122 29 C -0.121 4.121 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.273 0.727 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -0.728 13.534 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.100 0.900 4 C -0.047 4.047 5 N -0.207 5.207 6 C 0.083 3.917 7 C -0.372 4.372 8 C -0.074 4.074 9 C -0.309 4.309 10 C 0.136 3.864 11 C -0.459 4.459 12 H 0.102 0.898 13 C -0.160 4.160 14 N -0.321 5.321 15 Si 0.729 3.271 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.186 1.186 19 N -0.171 5.171 20 C -0.056 4.056 21 C -0.143 4.143 22 C -0.064 4.064 23 H 0.091 0.909 24 C -0.061 4.061 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.150 4.150 28 C -0.140 4.140 29 C -0.139 4.139 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.114 0.869 13.846 16.071 hybrid contribution -0.014 -1.311 -0.726 1.498 sum -8.128 -0.441 13.120 15.440 Atomic orbital electron populations 1.21784 0.95221 1.01497 1.01647 1.21212 0.94814 1.00520 0.93106 0.89968 1.21982 0.86647 0.98347 0.97750 1.58373 1.06910 1.54896 1.00538 1.19502 0.94054 0.87649 0.90453 1.21556 1.16447 0.97495 1.01716 1.20700 0.95711 0.97242 0.93775 1.21720 1.11294 0.96017 1.01831 1.18467 0.89540 0.89244 0.89123 1.19606 1.29445 0.92830 1.04038 0.89773 1.26094 0.95253 0.99141 0.95483 1.70176 1.28802 1.14683 1.18438 0.86369 0.80155 0.79868 0.80685 1.19446 1.20103 1.18612 1.68411 1.11050 1.34974 1.02626 1.21961 1.00071 0.94391 0.89173 1.21663 0.93807 1.02128 0.96726 1.20319 0.96125 0.98337 0.91588 0.90887 1.19902 0.96317 0.94282 0.95564 1.21120 0.99868 0.94337 0.97644 1.21149 0.98217 0.99806 0.94540 1.21088 0.99334 0.95205 0.99376 1.21081 1.00339 0.94903 0.97672 1.21066 0.98650 0.99798 0.94354 0.92587 0.92593 0.93028 0.90801 0.95212 0.89365 0.88918 0.88398 0.91560 0.90885 0.95063 0.90695 0.91780 0.85681 0.86318 0.86586 0.86518 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.98 37.15 0.33 -1.44 16 2 C -0.08 -1.11 2.24 -90.54 -0.20 -1.31 16 3 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16 4 C 0.08 1.43 4.49 -3.83 -0.02 1.41 16 5 N -0.49 -10.05 4.70 -173.20 -0.81 -10.86 16 6 C 0.32 7.85 5.67 -155.32 -0.88 6.97 16 7 C -0.35 -7.91 8.74 -38.87 -0.34 -8.25 16 8 C -0.05 -1.14 10.15 -39.39 -0.40 -1.54 16 9 C -0.29 -7.12 9.83 -38.65 -0.38 -7.50 16 10 C 0.26 7.22 6.55 -85.00 -0.56 6.66 16 11 C -0.43 -11.49 9.14 -37.74 -0.34 -11.83 16 12 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 13 C 0.07 1.70 5.50 -17.34 -0.10 1.61 16 14 N -0.70 -18.77 11.46 55.55 0.64 -18.13 16 15 Si 0.91 18.61 29.56 -169.99 -5.02 13.59 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 N -0.46 -12.71 7.89 -10.33 -0.08 -12.79 16 20 C 0.07 1.26 5.04 -3.83 -0.02 1.24 16 21 C -0.11 -1.50 5.22 -26.65 -0.14 -1.63 16 22 C -0.05 -0.58 1.94 -91.64 -0.18 -0.76 16 23 H 0.07 0.91 7.88 -51.93 -0.41 0.51 16 24 C -0.06 -0.72 3.66 -104.62 -0.38 -1.11 16 25 C -0.11 -1.33 8.66 -39.58 -0.34 -1.68 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 27 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 28 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 29 C -0.12 -1.30 9.67 -39.58 -0.38 -1.69 16 30 H 0.06 0.66 7.30 -51.93 -0.38 0.28 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 34 H 0.03 0.52 7.74 -51.93 -0.40 0.11 16 35 H 0.09 1.83 7.08 -52.48 -0.37 1.46 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 39 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 40 H 0.03 0.53 7.10 -51.93 -0.37 0.16 16 41 H 0.07 1.13 7.30 -51.93 -0.38 0.75 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.13 1.53 7.06 -52.49 -0.37 1.16 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.12 1.12 7.95 -52.48 -0.42 0.70 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -29.41 374.34 -12.41 -41.82 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.25 Total: 6.53 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -5.52 Total: -25.80 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.26 Total: -41.78 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.41 -12.41 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.547 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds