Wall clock time and date at job start Tue Mar 31 2020 14:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.53933 * 2 1 4 4 C 1.53039 * 109.50537 * 239.89756 * 2 1 3 5 5 N 1.46843 * 109.52391 * 180.87980 * 4 2 1 6 6 C 1.38830 * 111.00172 * 185.84120 * 5 4 2 7 7 C 1.39797 * 119.58085 * 291.84188 * 6 5 4 8 8 C 1.38597 * 119.48732 * 179.97438 * 7 6 5 9 9 C 1.38393 * 118.68296 * 0.02562 * 8 7 6 10 10 C 1.40560 * 119.14599 * 359.97438 * 9 8 7 11 11 C 1.41308 * 119.77961 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00453 * 359.97438 * 11 10 9 13 13 C 1.40037 * 119.99824 * 179.97438 * 11 10 9 14 14 N 1.30743 * 119.99635 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00032 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47317 * 90.00360 * 15 13 11 17 17 H 1.48504 * 109.47422 * 210.00403 * 15 13 11 18 18 H 1.48504 * 109.47471 * 330.00278 * 15 13 11 19 19 N 1.31947 * 119.58109 * 111.56214 * 6 5 4 20 20 C 1.46854 * 111.19690 * 61.74512 * 5 4 2 21 21 C 1.53029 * 109.52283 * 298.25524 * 20 5 4 22 22 C 1.53124 * 109.50053 * 120.09904 * 2 1 3 23 23 H 1.08998 * 109.52745 * 57.68901 * 22 2 1 24 24 C 1.50703 * 109.52100 * 297.49741 * 22 2 1 25 25 C 1.38237 * 120.00018 * 300.04284 * 24 22 2 26 26 C 1.38233 * 119.99778 * 179.74368 * 25 24 22 27 27 C 1.38241 * 119.99771 * 0.55360 * 26 25 24 28 28 C 1.38236 * 120.00154 * 359.70125 * 27 26 25 29 29 C 1.38233 * 119.99675 * 120.32017 * 24 22 2 30 30 H 1.09002 * 109.47076 * 299.90685 * 1 2 3 31 31 H 1.08998 * 109.47161 * 59.90428 * 1 2 3 32 32 H 1.09002 * 109.47464 * 179.89833 * 1 2 3 33 33 H 1.09001 * 109.45805 * 60.87049 * 4 2 1 34 34 H 1.08997 * 109.46104 * 300.89793 * 4 2 1 35 35 H 1.08005 * 120.25852 * 359.94927 * 7 6 5 36 36 H 1.07996 * 120.65653 * 180.02562 * 8 7 6 37 37 H 1.07989 * 120.42587 * 179.97438 * 9 8 7 38 38 H 0.97003 * 119.99785 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.45788 * 178.23958 * 20 5 4 40 40 H 1.09003 * 109.45264 * 58.26841 * 20 5 4 41 41 H 1.08994 * 109.50822 * 299.23828 * 21 20 5 42 42 H 1.09001 * 109.50199 * 179.11868 * 21 20 5 43 43 H 1.08001 * 120.00218 * 0.02562 * 25 24 22 44 44 H 1.07999 * 120.00161 * 180.27511 * 26 25 24 45 45 H 1.08009 * 119.99792 * 179.72463 * 27 26 25 46 46 H 1.07995 * 119.99613 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.00425 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7422 -1.2378 6 6 4.0083 -1.2750 -2.4187 7 6 3.8180 -2.6314 -2.6984 8 6 4.3166 -3.1612 -3.8781 9 6 4.9928 -2.3243 -4.7485 10 6 5.1516 -0.9692 -4.4107 11 6 5.8392 -0.1026 -5.2899 12 1 6.2411 -0.4821 -6.2176 13 6 5.9996 1.2484 -4.9581 14 7 5.5135 1.7078 -3.8347 15 14 6.9092 2.3938 -6.1199 16 1 5.9454 2.9991 -7.0738 17 1 7.5723 3.4680 -5.3377 18 1 7.9333 1.6251 -6.8720 19 7 4.6513 -0.4935 -3.2653 20 6 4.0229 -1.4731 -0.0722 21 6 3.5711 -0.7720 1.2108 22 6 2.0411 -0.7239 1.2488 23 1 1.6451 -1.7392 1.2691 24 6 1.5910 0.0183 2.4807 25 6 1.9753 1.3319 2.6753 26 6 1.5581 2.0143 3.8027 27 6 0.7659 1.3796 4.7412 28 6 0.3860 0.0644 4.5491 29 6 0.7985 -0.6162 3.4189 30 1 -0.3633 0.5124 0.8908 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3634 -1.0277 -0.0018 33 1 1.6906 -0.2023 -2.1389 34 1 1.6647 -1.7465 -1.2543 35 1 3.2870 -3.2618 -2.0004 36 1 4.1801 -4.2063 -4.1134 37 1 5.3932 -2.7075 -5.6753 38 1 5.6249 2.6435 -3.6047 39 1 5.1120 -1.4963 -0.1093 40 1 3.6372 -2.4925 -0.0842 41 1 3.9677 0.2431 1.2299 42 1 3.9394 -1.3235 2.0759 43 1 2.5978 1.8264 1.9443 44 1 1.8547 3.0419 3.9526 45 1 0.4436 1.9114 5.6243 46 1 -0.2325 -0.4315 5.2825 47 1 0.5023 -1.6440 3.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:45 Heat of formation + Delta-G solvation = 46.375031 kcal Electronic energy + Delta-G solvation = -26875.324070 eV Core-core repulsion = 23407.675373 eV Total energy + Delta-G solvation = -3467.648696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.37317 -40.22009 -38.81351 -36.03776 -35.00320 -33.21656 -32.41831 -31.75640 -31.59145 -30.12098 -27.63016 -27.22491 -25.62767 -23.64006 -23.34283 -23.13862 -22.45716 -21.69183 -20.28137 -19.33124 -17.89603 -17.61316 -16.58569 -16.46076 -16.27544 -16.25178 -16.07357 -15.69600 -15.32750 -14.98222 -14.79703 -14.44379 -14.12085 -14.03427 -13.92144 -13.76499 -13.59395 -13.24088 -12.96281 -12.89394 -12.80453 -12.74035 -12.64555 -12.46469 -12.27418 -12.06857 -11.88566 -11.79790 -11.50454 -11.44463 -11.18809 -11.09552 -10.11560 -9.92349 -9.73222 -9.48853 -9.45116 -8.96155 -8.20526 -6.52421 0.53779 0.58705 0.79397 1.15454 1.40063 1.51578 1.54968 2.22609 2.81198 2.85199 2.95492 3.65586 3.70104 3.81849 3.99707 4.13269 4.17365 4.23760 4.29716 4.34574 4.36900 4.38457 4.45688 4.53523 4.60737 4.67984 4.69766 4.77614 4.82102 4.84287 4.86115 4.89114 4.93039 5.01152 5.04275 5.11489 5.20538 5.25639 5.27018 5.28413 5.38732 5.46461 5.63564 5.67454 5.71236 5.81266 5.85754 5.94400 6.21043 6.22078 6.26725 6.48232 6.80156 7.01813 8.24286 8.45817 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003219 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.383091 B = 8696.313096 C = 9722.527234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 H 0.062 0.938 4 C 0.086 3.914 5 N -0.506 5.506 6 C 0.310 3.690 7 C -0.342 4.342 8 C -0.048 4.048 9 C -0.306 4.306 10 C 0.228 3.772 11 C -0.464 4.464 12 H 0.091 0.909 13 C 0.022 3.978 14 N -0.743 5.743 15 Si 0.987 3.013 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.254 1.254 19 N -0.499 5.499 20 C 0.075 3.925 21 C -0.096 4.096 22 C -0.034 4.034 23 H 0.086 0.914 24 C -0.071 4.071 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.123 4.123 29 C -0.124 4.124 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.277 0.723 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -1.560 15.252 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.041 4.041 5 N -0.229 5.229 6 C 0.073 3.927 7 C -0.368 4.368 8 C -0.072 4.072 9 C -0.328 4.328 10 C 0.103 3.897 11 C -0.495 4.495 12 H 0.109 0.891 13 C -0.201 4.201 14 N -0.364 5.364 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.178 1.178 19 N -0.213 5.213 20 C -0.053 4.053 21 C -0.134 4.134 22 C -0.053 4.053 23 H 0.104 0.896 24 C -0.071 4.071 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.141 4.141 29 C -0.142 4.142 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.395 0.012 15.582 18.195 hybrid contribution 0.315 -1.133 -1.158 1.650 sum -9.080 -1.121 14.424 17.080 Atomic orbital electron populations 1.21709 0.93270 1.02427 1.01888 1.21112 0.96260 0.99082 0.92316 0.91968 1.21978 0.84978 0.98838 0.98338 1.58398 1.08484 1.55800 1.00175 1.19980 0.93303 0.88386 0.91060 1.21858 1.15623 0.97193 1.02091 1.21120 0.94218 0.98855 0.93035 1.21917 1.12325 0.95550 1.03012 1.18959 0.90262 0.90794 0.89685 1.19983 1.30756 0.94092 1.04670 0.89113 1.27030 0.95646 1.00339 0.97064 1.70304 1.30351 1.15256 1.20516 0.85151 0.78739 0.77309 0.78149 1.18743 1.19370 1.17787 1.68373 1.12632 1.36686 1.03584 1.21996 0.98744 0.95145 0.89382 1.21594 0.95129 1.01114 0.95561 1.20185 0.94776 0.98916 0.91383 0.89567 1.19758 0.97555 0.94220 0.95561 1.21130 1.00540 0.94828 0.98198 1.21362 0.98385 1.00535 0.94311 1.21425 0.98392 0.95479 0.99715 1.21422 0.99999 0.94914 0.97724 1.21276 0.98090 1.00598 0.94216 0.91633 0.93051 0.91685 0.93779 0.94289 0.86816 0.85097 0.87163 0.91225 0.93138 0.93917 0.92219 0.89579 0.87213 0.85129 0.84237 0.83986 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.98 71.98 0.65 -2.53 16 2 C -0.07 -1.97 2.24 -10.74 -0.02 -1.99 16 3 H 0.06 2.03 7.32 -2.38 -0.02 2.01 16 4 C 0.09 3.11 4.49 86.33 0.39 3.50 16 5 N -0.51 -21.60 4.70 -701.88 -3.30 -24.90 16 6 C 0.31 15.59 5.67 133.42 0.76 16.35 16 7 C -0.34 -15.48 8.74 22.73 0.20 -15.28 16 8 C -0.05 -2.15 10.15 22.39 0.23 -1.92 16 9 C -0.31 -15.46 9.83 22.87 0.22 -15.24 16 10 C 0.23 13.13 6.55 40.18 0.26 13.39 16 11 C -0.46 -25.87 9.14 23.46 0.21 -25.65 16 12 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 13 C 0.02 1.14 5.50 85.29 0.47 1.61 16 14 N -0.74 -41.70 11.46 21.84 0.25 -41.45 16 15 Si 0.99 39.11 29.56 68.60 2.03 41.14 16 16 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 19 N -0.50 -29.01 7.89 -186.58 -1.47 -30.48 16 20 C 0.07 2.63 5.04 86.32 0.44 3.07 16 21 C -0.10 -2.69 5.22 30.65 0.16 -2.53 16 22 C -0.03 -0.84 1.94 -11.46 -0.02 -0.86 16 23 H 0.09 1.92 7.88 -2.39 -0.02 1.90 16 24 C -0.07 -1.58 3.66 -19.86 -0.07 -1.65 16 25 C -0.13 -3.01 8.66 22.27 0.19 -2.82 16 26 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 27 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 28 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 29 C -0.12 -2.30 9.67 22.27 0.22 -2.09 16 30 H 0.06 1.43 7.30 -2.39 -0.02 1.41 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.04 1.32 7.74 -2.39 -0.02 1.30 16 35 H 0.11 4.50 7.08 -2.91 -0.02 4.48 16 36 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.11 5.12 8.06 -2.92 -0.02 5.10 16 38 H 0.28 14.17 8.29 -92.71 -0.77 13.40 16 39 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 40 H 0.04 1.39 7.10 -2.39 -0.02 1.38 16 41 H 0.06 1.85 7.30 -2.39 -0.02 1.84 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.11 2.82 7.06 -2.91 -0.02 2.80 16 44 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.13 2.02 7.95 -2.91 -0.02 2.00 16 Total: -1.00 -66.93 374.34 3.39 -63.54 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.94 Total: 32.88 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.94 Total: -40.72 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.52 Total: -96.83 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -66.93 3.39 -63.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.912 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds