Wall clock time and date at job start Tue Mar 31 2020 14:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50247 * 2 1 4 4 C 1.53039 * 109.53545 * 120.09907 * 2 1 3 5 5 N 1.46840 * 109.52527 * 60.77863 * 4 2 1 6 6 C 1.38820 * 111.00037 * 185.84103 * 5 4 2 7 7 C 1.39798 * 119.58298 * 291.85595 * 6 5 4 8 8 C 1.38594 * 119.49103 * 180.02562 * 7 6 5 9 9 C 1.38385 * 118.68313 * 359.97438 * 8 7 6 10 10 C 1.40556 * 119.14807 * 359.97438 * 9 8 7 11 11 C 1.41315 * 119.78555 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.40027 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.30749 * 119.99736 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00024 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47169 * 90.00491 * 15 13 11 17 17 H 1.48505 * 109.47068 * 209.99825 * 15 13 11 18 18 H 1.48496 * 109.47494 * 329.99875 * 15 13 11 19 19 N 1.31952 * 119.58775 * 111.84196 * 6 5 4 20 20 C 1.46849 * 111.19747 * 61.74178 * 5 4 2 21 21 C 1.53042 * 109.52536 * 298.25845 * 20 5 4 22 22 C 1.53117 * 109.50345 * 239.92036 * 2 1 3 23 23 H 1.09004 * 109.52595 * 177.76890 * 22 2 1 24 24 C 1.50707 * 109.57560 * 57.60936 * 22 2 1 25 25 C 1.38231 * 119.99884 * 102.98818 * 24 22 2 26 26 C 1.38236 * 119.99829 * 179.76601 * 25 24 22 27 27 C 1.38234 * 120.00002 * 0.48772 * 26 25 24 28 28 C 1.38232 * 119.99963 * 359.78650 * 27 26 25 29 29 C 1.38231 * 119.99870 * 283.25962 * 24 22 2 30 30 H 1.09002 * 109.46985 * 173.42049 * 1 2 3 31 31 H 1.08993 * 109.46912 * 293.41799 * 1 2 3 32 32 H 1.09001 * 109.47228 * 53.42022 * 1 2 3 33 33 H 1.09000 * 109.46003 * 300.75980 * 4 2 1 34 34 H 1.08999 * 109.46093 * 180.79679 * 4 2 1 35 35 H 1.08001 * 120.25866 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.66220 * 180.25925 * 8 7 6 37 37 H 1.08001 * 120.43328 * 180.02562 * 9 8 7 38 38 H 0.97002 * 119.99387 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.46155 * 58.27444 * 20 5 4 40 40 H 1.09002 * 109.46548 * 178.25382 * 20 5 4 41 41 H 1.09000 * 109.50125 * 179.11973 * 21 20 5 42 42 H 1.08998 * 109.50017 * 299.19879 * 21 20 5 43 43 H 1.08001 * 120.00142 * 0.02562 * 25 24 22 44 44 H 1.08003 * 119.99759 * 180.25418 * 26 25 24 45 45 H 1.08002 * 119.99893 * 179.76536 * 27 26 25 46 46 H 1.08001 * 120.00120 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00384 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 1.5691 -2.1135 1.2377 6 6 1.9051 -2.7618 2.4184 7 6 3.2473 -3.0351 2.6978 8 6 3.5806 -3.6829 3.8769 9 6 2.5663 -4.0411 4.7475 10 6 1.2359 -3.7377 4.4105 11 6 0.1895 -4.0978 5.2894 12 1 0.4133 -4.6041 6.2167 13 6 -1.1376 -3.7982 4.9580 14 7 -1.4086 -3.1857 3.8351 15 14 -2.5207 -4.2748 6.1194 16 1 -2.7699 -3.1651 7.0743 17 1 -3.7546 -4.5409 5.3370 18 1 -2.1376 -5.4973 6.8703 19 7 0.9536 -3.1121 3.2628 20 6 2.0862 -2.8417 0.0720 21 6 1.5757 -2.1817 -1.2110 22 6 2.0412 -0.7234 -1.2489 23 1 3.1305 -0.6891 -1.2696 24 6 1.4928 -0.0517 -2.4815 25 6 2.2999 0.7844 -3.2301 26 6 1.7983 1.3967 -4.3634 27 6 0.4866 1.1809 -4.7424 28 6 -0.3222 0.3493 -3.9907 29 6 0.1810 -0.2672 -2.8603 30 1 -0.3633 -1.0209 -0.1178 31 1 -0.3633 0.4084 0.9430 32 1 -0.3634 0.6124 -0.8252 33 1 1.6678 -0.2190 2.1389 34 1 3.1317 -0.7102 1.2538 35 1 4.0187 -2.7437 2.0004 36 1 4.6117 -3.8997 4.1138 37 1 2.7939 -4.5466 5.6743 38 1 -2.3280 -2.9785 3.6054 39 1 3.1759 -2.8187 0.0835 40 1 1.7443 -3.8760 0.1088 41 1 1.9724 -2.7129 -2.0762 42 1 0.4865 -2.2172 -1.2300 43 1 3.3237 0.9559 -2.9319 44 1 2.4302 2.0467 -4.9505 45 1 0.0936 1.6623 -5.6258 46 1 -1.3472 0.1810 -4.2866 47 1 -0.4511 -0.9166 -2.2728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:50 Heat of formation + Delta-G solvation = 66.413671 kcal Electronic energy + Delta-G solvation = -27091.437203 eV Core-core repulsion = 23624.657447 eV Total energy + Delta-G solvation = -3466.779755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.28773 -38.84209 -37.41558 -34.49933 -33.22592 -31.55185 -30.99395 -30.59447 -30.15523 -28.54547 -26.54985 -25.47920 -24.22660 -23.03274 -21.88230 -21.38705 -21.34419 -20.31912 -18.32480 -17.47049 -16.83017 -16.25360 -15.29605 -15.20590 -14.81368 -14.54302 -14.44684 -14.34650 -14.21543 -13.72673 -13.55722 -13.34338 -12.89195 -12.82057 -12.54212 -12.28819 -12.14838 -11.86801 -11.59776 -11.42618 -11.28734 -11.12037 -11.04000 -10.86843 -10.74250 -10.72164 -10.56153 -10.41793 -10.15381 -10.05725 -9.77975 -9.34027 -8.88970 -8.60806 -8.21271 -8.11481 -7.52485 -7.18729 -6.31467 -4.51166 1.36554 1.39949 2.67284 3.01050 3.10330 3.12890 3.19913 3.78232 3.96004 4.41508 4.69935 4.71710 4.79220 4.97099 5.04969 5.11511 5.16511 5.38808 5.48603 5.53426 5.54341 5.62421 5.83160 5.84863 5.87845 5.94903 5.99899 6.04785 6.10136 6.12804 6.17275 6.22974 6.32842 6.40101 6.40987 6.47289 6.50132 6.52672 6.54108 6.70514 6.73789 6.85008 6.90405 6.93299 7.01662 7.23097 7.54317 7.67813 7.74330 7.77110 8.21148 8.33187 8.72212 8.95830 10.15530 10.33837 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003301 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.580695 B = 8479.041416 C = 9631.444088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 H 0.067 0.933 4 C 0.079 3.921 5 N -0.480 5.480 6 C 0.322 3.678 7 C -0.346 4.346 8 C -0.050 4.050 9 C -0.286 4.286 10 C 0.262 3.738 11 C -0.428 4.428 12 H 0.084 0.916 13 C 0.067 3.933 14 N -0.700 5.700 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.262 1.262 19 N -0.456 5.456 20 C 0.071 3.929 21 C -0.109 4.109 22 C -0.046 4.046 23 H 0.072 0.928 24 C -0.064 4.064 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.131 4.131 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.273 0.727 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 7.145 -13.486 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.049 4.049 5 N -0.202 5.202 6 C 0.083 3.917 7 C -0.372 4.372 8 C -0.074 4.074 9 C -0.309 4.309 10 C 0.136 3.864 11 C -0.459 4.459 12 H 0.102 0.898 13 C -0.159 4.159 14 N -0.320 5.320 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.186 1.186 19 N -0.170 5.170 20 C -0.057 4.057 21 C -0.147 4.147 22 C -0.065 4.065 23 H 0.091 0.909 24 C -0.064 4.064 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.149 4.149 28 C -0.141 4.141 29 C -0.127 4.127 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.275 7.401 -13.802 15.713 hybrid contribution 1.299 -0.371 0.759 1.549 sum 2.574 7.030 -13.043 15.039 Atomic orbital electron populations 1.21894 0.94175 1.02828 1.00783 1.21129 0.97404 0.97859 0.92926 0.91421 1.21981 0.96551 0.88564 0.97783 1.58358 1.60490 1.00974 1.00417 1.19516 0.87904 0.93759 0.90512 1.21562 0.96809 1.17121 1.01757 1.20696 0.97061 0.95889 0.93792 1.21718 0.94454 1.12893 1.01819 1.18464 0.90484 0.88310 0.89116 1.19600 0.90190 1.32048 1.04084 0.89810 1.26085 1.00158 0.94222 0.95480 1.70178 1.20243 1.23193 1.18418 0.86376 0.80133 0.79908 0.80701 1.19462 1.20110 1.18632 1.68412 1.32239 1.13722 1.02582 1.21964 0.96706 0.97757 0.89225 1.21742 1.02309 0.93865 0.96740 1.20276 0.99458 0.95038 0.91696 0.90914 1.19910 0.93985 0.96615 0.95899 1.21058 0.99699 0.97667 0.95447 1.21073 0.95746 1.00168 0.97158 1.21084 0.94329 0.99439 1.00033 1.21159 0.99712 0.97657 0.95541 1.21255 0.95322 0.99767 0.96367 0.90853 0.92857 0.93537 0.90747 0.95299 0.89385 0.88953 0.88430 0.91585 0.95096 0.90906 0.91858 0.90331 0.86409 0.86532 0.86610 0.86335 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.41 37.16 0.28 -1.82 16 2 C -0.07 -1.07 2.76 -90.54 -0.25 -1.32 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.08 1.39 4.64 -3.84 -0.02 1.38 16 5 N -0.48 -9.73 4.11 -173.20 -0.71 -10.44 16 6 C 0.32 7.75 5.67 -155.33 -0.88 6.87 16 7 C -0.35 -7.87 8.74 -38.87 -0.34 -8.21 16 8 C -0.05 -1.14 10.15 -39.40 -0.40 -1.54 16 9 C -0.29 -7.10 9.83 -38.65 -0.38 -7.48 16 10 C 0.26 7.18 6.55 -85.00 -0.56 6.62 16 11 C -0.43 -11.44 9.14 -37.74 -0.34 -11.78 16 12 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 13 C 0.07 1.70 5.50 -17.34 -0.10 1.60 16 14 N -0.70 -18.59 11.46 55.55 0.64 -17.95 16 15 Si 0.90 18.56 29.56 -169.99 -5.02 13.53 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 N -0.46 -12.55 7.89 -10.33 -0.08 -12.63 16 20 C 0.07 1.23 5.04 -3.83 -0.02 1.21 16 21 C -0.11 -1.52 4.67 -26.65 -0.12 -1.64 16 22 C -0.05 -0.60 2.29 -91.65 -0.21 -0.81 16 23 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 24 C -0.06 -0.77 4.60 -104.62 -0.48 -1.25 16 25 C -0.12 -1.33 9.67 -39.58 -0.38 -1.71 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 28 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 29 C -0.11 -1.29 6.91 -39.58 -0.27 -1.57 16 30 H 0.07 1.21 5.57 -51.93 -0.29 0.92 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.62 6.02 -51.93 -0.31 0.31 16 33 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 34 H 0.03 0.50 7.74 -51.93 -0.40 0.09 16 35 H 0.09 1.82 7.08 -52.49 -0.37 1.45 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 39 H 0.03 0.52 7.10 -51.93 -0.37 0.15 16 40 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.14 4.95 -51.93 -0.26 0.89 16 43 H 0.12 1.13 8.02 -52.49 -0.42 0.71 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.13 1.54 5.41 -52.49 -0.28 1.26 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -29.04 364.96 -12.25 -41.29 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.89 Total: 7.18 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -5.67 Total: -26.48 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.16 Total: -41.02 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.04 -12.25 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.699 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds