Wall clock time and date at job start Tue Mar 31 2020 14:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50247 * 2 1 4 4 C 1.53039 * 109.53545 * 120.09907 * 2 1 3 5 5 N 1.46840 * 109.52527 * 60.77863 * 4 2 1 6 6 C 1.38820 * 111.00037 * 185.84103 * 5 4 2 7 7 C 1.39798 * 119.58298 * 291.85595 * 6 5 4 8 8 C 1.38594 * 119.49103 * 180.02562 * 7 6 5 9 9 C 1.38385 * 118.68313 * 359.97438 * 8 7 6 10 10 C 1.40556 * 119.14807 * 359.97438 * 9 8 7 11 11 C 1.41315 * 119.78555 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.40027 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.30749 * 119.99736 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00024 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47169 * 90.00491 * 15 13 11 17 17 H 1.48505 * 109.47068 * 209.99825 * 15 13 11 18 18 H 1.48496 * 109.47494 * 329.99875 * 15 13 11 19 19 N 1.31952 * 119.58775 * 111.84196 * 6 5 4 20 20 C 1.46849 * 111.19747 * 61.74178 * 5 4 2 21 21 C 1.53042 * 109.52536 * 298.25845 * 20 5 4 22 22 C 1.53117 * 109.50345 * 239.92036 * 2 1 3 23 23 H 1.09004 * 109.52595 * 177.76890 * 22 2 1 24 24 C 1.50707 * 109.57560 * 57.60936 * 22 2 1 25 25 C 1.38231 * 119.99884 * 102.98818 * 24 22 2 26 26 C 1.38236 * 119.99829 * 179.76601 * 25 24 22 27 27 C 1.38234 * 120.00002 * 0.48772 * 26 25 24 28 28 C 1.38232 * 119.99963 * 359.78650 * 27 26 25 29 29 C 1.38231 * 119.99870 * 283.25962 * 24 22 2 30 30 H 1.09002 * 109.46985 * 173.42049 * 1 2 3 31 31 H 1.08993 * 109.46912 * 293.41799 * 1 2 3 32 32 H 1.09001 * 109.47228 * 53.42022 * 1 2 3 33 33 H 1.09000 * 109.46003 * 300.75980 * 4 2 1 34 34 H 1.08999 * 109.46093 * 180.79679 * 4 2 1 35 35 H 1.08001 * 120.25866 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.66220 * 180.25925 * 8 7 6 37 37 H 1.08001 * 120.43328 * 180.02562 * 9 8 7 38 38 H 0.97002 * 119.99387 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.46155 * 58.27444 * 20 5 4 40 40 H 1.09002 * 109.46548 * 178.25382 * 20 5 4 41 41 H 1.09000 * 109.50125 * 179.11973 * 21 20 5 42 42 H 1.08998 * 109.50017 * 299.19879 * 21 20 5 43 43 H 1.08001 * 120.00142 * 0.02562 * 25 24 22 44 44 H 1.08003 * 119.99759 * 180.25418 * 26 25 24 45 45 H 1.08002 * 119.99893 * 179.76536 * 27 26 25 46 46 H 1.08001 * 120.00120 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00384 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 1.5691 -2.1135 1.2377 6 6 1.9051 -2.7618 2.4184 7 6 3.2473 -3.0351 2.6978 8 6 3.5806 -3.6829 3.8769 9 6 2.5663 -4.0411 4.7475 10 6 1.2359 -3.7377 4.4105 11 6 0.1895 -4.0978 5.2894 12 1 0.4133 -4.6041 6.2167 13 6 -1.1376 -3.7982 4.9580 14 7 -1.4086 -3.1857 3.8351 15 14 -2.5207 -4.2748 6.1194 16 1 -2.7699 -3.1651 7.0743 17 1 -3.7546 -4.5409 5.3370 18 1 -2.1376 -5.4973 6.8703 19 7 0.9536 -3.1121 3.2628 20 6 2.0862 -2.8417 0.0720 21 6 1.5757 -2.1817 -1.2110 22 6 2.0412 -0.7234 -1.2489 23 1 3.1305 -0.6891 -1.2696 24 6 1.4928 -0.0517 -2.4815 25 6 2.2999 0.7844 -3.2301 26 6 1.7983 1.3967 -4.3634 27 6 0.4866 1.1809 -4.7424 28 6 -0.3222 0.3493 -3.9907 29 6 0.1810 -0.2672 -2.8603 30 1 -0.3633 -1.0209 -0.1178 31 1 -0.3633 0.4084 0.9430 32 1 -0.3634 0.6124 -0.8252 33 1 1.6678 -0.2190 2.1389 34 1 3.1317 -0.7102 1.2538 35 1 4.0187 -2.7437 2.0004 36 1 4.6117 -3.8997 4.1138 37 1 2.7939 -4.5466 5.6743 38 1 -2.3280 -2.9785 3.6054 39 1 3.1759 -2.8187 0.0835 40 1 1.7443 -3.8760 0.1088 41 1 1.9724 -2.7129 -2.0762 42 1 0.4865 -2.2172 -1.2300 43 1 3.3237 0.9559 -2.9319 44 1 2.4302 2.0467 -4.9505 45 1 0.0936 1.6623 -5.6258 46 1 -1.3472 0.1810 -4.2866 47 1 -0.4511 -0.9166 -2.2728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:49 Heat of formation + Delta-G solvation = 53.554927 kcal Electronic energy + Delta-G solvation = -27091.994800 eV Core-core repulsion = 23624.657447 eV Total energy + Delta-G solvation = -3467.337352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.50832 -40.23196 -38.84280 -36.01575 -34.95886 -32.78267 -32.40257 -31.81751 -31.57750 -30.07016 -27.79584 -27.33328 -25.57255 -24.14149 -23.30467 -22.86090 -22.54056 -21.80316 -19.69307 -19.17436 -18.01718 -17.59229 -16.70783 -16.46087 -16.28976 -16.10326 -15.90417 -15.76346 -15.32408 -15.10998 -14.92896 -14.41068 -14.17613 -14.04812 -13.91235 -13.75190 -13.62945 -13.21006 -12.89303 -12.79810 -12.74198 -12.65687 -12.59968 -12.39764 -12.25415 -11.97981 -11.85710 -11.77361 -11.50650 -11.35541 -11.17600 -11.02786 -10.09770 -9.88983 -9.69251 -9.47220 -9.43626 -8.92452 -8.19100 -6.51138 0.54683 0.60036 0.80697 1.16515 1.40566 1.51867 1.55162 2.23158 2.82484 2.88252 2.96157 3.66350 3.75696 3.82583 3.96952 4.16178 4.22919 4.24761 4.30491 4.32806 4.36522 4.38560 4.50355 4.54687 4.63597 4.69652 4.73676 4.80596 4.84283 4.86117 4.89474 4.91509 4.98190 5.02252 5.06960 5.14631 5.23461 5.27759 5.29631 5.30797 5.40886 5.61892 5.64729 5.68569 5.72530 5.82377 5.86748 5.95124 6.22329 6.23481 6.29046 6.49770 6.81400 7.03355 8.25587 8.46683 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003301 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.580695 B = 8479.041416 C = 9631.444088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 H 0.086 0.914 4 C 0.083 3.917 5 N -0.496 5.496 6 C 0.311 3.689 7 C -0.343 4.343 8 C -0.048 4.048 9 C -0.307 4.307 10 C 0.229 3.771 11 C -0.464 4.464 12 H 0.089 0.911 13 C 0.023 3.977 14 N -0.740 5.740 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.255 1.255 19 N -0.496 5.496 20 C 0.074 3.926 21 C -0.099 4.099 22 C -0.035 4.035 23 H 0.085 0.915 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.131 4.131 29 C -0.124 4.124 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.277 0.723 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 8.145 -15.224 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 H 0.104 0.896 4 C -0.044 4.044 5 N -0.219 5.219 6 C 0.073 3.927 7 C -0.369 4.369 8 C -0.073 4.073 9 C -0.329 4.329 10 C 0.103 3.897 11 C -0.495 4.495 12 H 0.108 0.892 13 C -0.200 4.200 14 N -0.362 5.362 15 Si 0.805 3.195 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.179 1.179 19 N -0.210 5.210 20 C -0.054 4.054 21 C -0.137 4.137 22 C -0.054 4.054 23 H 0.103 0.897 24 C -0.076 4.076 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.142 4.142 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.215 8.406 -15.558 17.822 hybrid contribution 1.118 -0.639 1.189 1.753 sum 3.333 7.767 -14.369 16.671 Atomic orbital electron populations 1.21781 0.94929 1.01722 1.00257 1.21084 0.96620 0.98546 0.92234 0.89602 1.21981 0.96933 0.87178 0.98356 1.58372 1.61568 1.02049 0.99907 1.20000 0.88269 0.93272 0.91164 1.21869 0.96877 1.16023 1.02093 1.21108 0.98454 0.94616 0.93102 1.21908 0.94205 1.13818 1.02983 1.18948 0.92004 0.89009 0.89710 1.19965 0.91364 1.33481 1.04697 0.89245 1.26997 1.02370 0.93582 0.97058 1.70301 1.21008 1.24437 1.20405 0.85170 0.76400 0.79695 0.78197 1.18808 1.19349 1.17891 1.68378 1.34082 1.15048 1.03466 1.22002 0.97157 0.96691 0.89514 1.21670 1.01699 0.94886 0.95449 1.20142 1.00047 0.93795 0.91380 0.89652 1.19791 0.94266 0.97656 0.95883 1.21274 1.00297 0.97246 0.95573 1.21404 0.96101 0.99960 0.96902 1.21423 0.94325 0.98767 1.00456 1.21391 1.00663 0.97627 0.95228 1.21276 0.95449 1.00338 0.97115 0.92829 0.94978 0.91738 0.93663 0.94377 0.86882 0.85246 0.87296 0.91239 0.94129 0.93145 0.89840 0.91367 0.84968 0.84164 0.84325 0.85006 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 7.41 71.98 0.53 -3.44 16 2 C -0.07 -1.85 2.76 -10.74 -0.03 -1.88 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.08 2.95 4.64 86.33 0.40 3.35 16 5 N -0.50 -20.60 4.11 -701.89 -2.88 -23.48 16 6 C 0.31 15.40 5.67 133.42 0.76 16.15 16 7 C -0.34 -15.43 8.74 22.73 0.20 -15.23 16 8 C -0.05 -2.17 10.15 22.39 0.23 -1.94 16 9 C -0.31 -15.49 9.83 22.87 0.22 -15.27 16 10 C 0.23 13.07 6.55 40.18 0.26 13.34 16 11 C -0.46 -25.77 9.14 23.46 0.21 -25.55 16 12 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 13 C 0.02 1.18 5.50 85.29 0.47 1.65 16 14 N -0.74 -41.11 11.46 21.84 0.25 -40.86 16 15 Si 0.99 38.96 29.56 68.60 2.03 40.99 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 19 N -0.50 -28.49 7.89 -186.59 -1.47 -29.96 16 20 C 0.07 2.55 5.04 86.33 0.44 2.98 16 21 C -0.10 -2.70 4.67 30.65 0.14 -2.56 16 22 C -0.04 -0.85 2.29 -11.46 -0.03 -0.88 16 23 H 0.09 1.88 7.98 -2.39 -0.02 1.86 16 24 C -0.08 -1.67 4.60 -19.87 -0.09 -1.76 16 25 C -0.13 -2.39 9.67 22.27 0.22 -2.17 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 27 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 28 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 29 C -0.12 -2.77 6.91 22.27 0.15 -2.62 16 30 H 0.05 1.85 5.57 -2.39 -0.01 1.83 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.72 6.02 -2.39 -0.01 1.70 16 33 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.04 1.27 7.74 -2.39 -0.02 1.25 16 35 H 0.11 4.45 7.08 -2.91 -0.02 4.43 16 36 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 39 H 0.04 1.31 7.10 -2.39 -0.02 1.29 16 40 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.02 4.95 -2.39 -0.01 2.01 16 43 H 0.13 2.07 8.02 -2.91 -0.02 2.05 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 46 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.12 2.83 5.41 -2.91 -0.02 2.81 16 Total: -1.00 -65.78 364.96 3.64 -62.14 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.96 Total: 33.17 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.76 Total: -42.00 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -4.10 Total: -94.31 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -65.78 3.64 -62.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.692 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds