Wall clock time and date at job start Tue Mar 31 2020 14:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.53592 * 2 1 4 4 C 1.53032 * 109.50324 * 239.90040 * 2 1 3 5 5 N 1.46842 * 109.52625 * 299.23862 * 4 2 1 6 6 C 1.38819 * 111.00295 * 174.15811 * 5 4 2 7 7 C 1.39798 * 119.58448 * 179.97438 * 6 5 4 8 8 C 1.38596 * 119.48909 * 179.77158 * 7 6 5 9 9 C 1.38394 * 118.67964 * 0.50063 * 8 7 6 10 10 C 1.40549 * 119.14904 * 359.74939 * 9 8 7 11 11 C 1.41320 * 119.78510 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99521 * 359.97112 * 11 10 9 13 13 C 1.40019 * 120.00165 * 179.97438 * 11 10 9 14 14 N 1.30742 * 119.99977 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47057 * 90.00083 * 15 13 11 17 17 H 1.48501 * 109.47095 * 210.00145 * 15 13 11 18 18 H 1.48498 * 109.46764 * 329.99877 * 15 13 11 19 19 N 1.31953 * 119.58526 * 0.25922 * 6 5 4 20 20 C 1.46852 * 111.19965 * 298.25861 * 5 4 2 21 21 C 1.53033 * 109.52183 * 61.73820 * 20 5 4 22 22 C 1.53116 * 109.28067 * 300.82282 * 21 20 5 23 23 H 1.08994 * 109.52590 * 297.68504 * 22 21 20 24 24 C 1.50706 * 109.52458 * 177.55976 * 22 21 20 25 25 C 1.38229 * 120.00154 * 137.07161 * 24 22 21 26 26 C 1.38242 * 120.00068 * 180.25741 * 25 24 22 27 27 C 1.38233 * 119.99921 * 359.53124 * 26 25 24 28 28 C 1.38231 * 119.99714 * 0.42239 * 27 26 25 29 29 C 1.38232 * 119.99754 * 317.05012 * 24 22 21 30 30 H 1.09002 * 109.46968 * 306.55163 * 1 2 3 31 31 H 1.09001 * 109.46998 * 66.55352 * 1 2 3 32 32 H 1.08997 * 109.47335 * 186.55655 * 1 2 3 33 33 H 1.08999 * 109.46447 * 179.21896 * 4 2 1 34 34 H 1.09000 * 109.45326 * 59.25028 * 4 2 1 35 35 H 1.08000 * 120.25764 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.66263 * 180.25385 * 8 7 6 37 37 H 1.07997 * 120.42290 * 179.73081 * 9 8 7 38 38 H 0.97005 * 119.99807 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.45998 * 301.72793 * 20 5 4 40 40 H 1.08994 * 109.45619 * 181.75251 * 20 5 4 41 41 H 1.09003 * 109.50271 * 180.87992 * 21 20 5 42 42 H 1.08999 * 109.53538 * 60.78428 * 21 20 5 43 43 H 1.07998 * 120.00122 * 359.97438 * 25 24 22 44 44 H 1.08004 * 119.99818 * 179.72863 * 26 25 24 45 45 H 1.07994 * 120.00144 * 180.21961 * 27 26 25 46 46 H 1.07998 * 119.99732 * 179.78962 * 28 27 26 47 47 H 1.08000 * 120.00547 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7234 -1.2480 5 7 1.5675 -2.1134 -1.2379 6 6 1.9027 -2.7618 -2.4187 7 6 1.5374 -4.0990 -2.5996 8 6 1.8689 -4.7430 -3.7812 9 6 2.5657 -4.0396 -4.7481 10 6 2.9092 -2.6986 -4.5048 11 6 3.6202 -1.9675 -5.4831 12 1 3.8982 -2.4396 -6.4139 13 6 3.9642 -0.6311 -5.2458 14 7 3.6272 -0.0595 -4.1192 15 14 4.9047 0.3351 -6.5387 16 1 3.9442 1.0040 -7.4526 17 1 5.7503 1.3588 -5.8737 18 1 5.7671 -0.5896 -7.3174 19 7 2.5671 -2.1098 -3.3540 20 6 2.0846 -2.8420 -0.0724 21 6 1.5750 -2.1818 1.2107 22 6 2.0412 -0.7239 1.2488 23 1 3.1304 -0.6902 1.2702 24 6 1.4923 -0.0515 2.4808 25 6 2.3007 0.7806 3.2323 26 6 1.7988 1.3931 4.3654 27 6 0.4855 1.1812 4.7414 28 6 -0.3231 0.3499 3.9893 29 6 0.1802 -0.2665 2.8589 30 1 -0.3633 0.6120 0.8256 31 1 -0.3633 0.4089 -0.9428 32 1 -0.3634 -1.0209 0.1173 33 1 3.1308 -0.7110 -1.2544 34 1 1.6668 -0.2188 -2.1388 35 1 0.9974 -4.6250 -1.8262 36 1 1.5924 -5.7745 -3.9426 37 1 2.8422 -4.5151 -5.6775 38 1 3.8653 0.8664 -3.9550 39 1 3.1743 -2.8196 -0.0842 40 1 1.7422 -3.8761 -0.1095 41 1 1.9716 -2.7134 2.0758 42 1 0.4857 -2.2162 1.2305 43 1 3.3258 0.9485 2.9369 44 1 2.4317 2.0398 4.9550 45 1 0.0923 1.6626 5.6246 46 1 -1.3482 0.1817 4.2850 47 1 -0.4517 -0.9160 2.2714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:53 Heat of formation + Delta-G solvation = 62.815586 kcal Electronic energy + Delta-G solvation = -27280.878541 eV Core-core repulsion = 23813.942761 eV Total energy + Delta-G solvation = -3466.935780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.24586 -38.83490 -37.34520 -34.43684 -33.27549 -31.56618 -30.99695 -30.57900 -30.07442 -28.41617 -26.64140 -25.59850 -24.02770 -23.05612 -21.96447 -21.48905 -20.87257 -20.23824 -18.22610 -17.49467 -16.84157 -16.25308 -15.25263 -15.12491 -14.78509 -14.63955 -14.55845 -14.15197 -13.89854 -13.64208 -13.43614 -13.32158 -13.17066 -12.79665 -12.40111 -12.25344 -12.12851 -11.80826 -11.54526 -11.39320 -11.24609 -11.19567 -11.04866 -10.88395 -10.68349 -10.62911 -10.52137 -10.36190 -10.06135 -9.93513 -9.75412 -9.41698 -8.87800 -8.63893 -8.57459 -8.00462 -7.58039 -6.90852 -6.41201 -4.51646 1.38570 1.41003 2.74818 3.03051 3.08238 3.10960 3.22061 3.79946 3.94093 4.51429 4.71235 4.81406 4.83893 4.97954 5.08430 5.16388 5.20809 5.43095 5.51582 5.54644 5.58556 5.71575 5.85177 5.87228 5.92223 6.01092 6.01709 6.09459 6.12954 6.18379 6.22477 6.36513 6.40825 6.42153 6.51043 6.53073 6.55715 6.67851 6.69239 6.74253 6.81878 6.83835 6.95981 7.02918 7.15498 7.20275 7.51551 7.72755 7.81293 7.87430 8.20672 8.39917 8.71104 9.00464 10.10053 10.30722 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.003536 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.279643 B = 7917.110860 C = 9168.222853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.068 0.932 4 C 0.087 3.913 5 N -0.476 5.476 6 C 0.323 3.677 7 C -0.322 4.322 8 C -0.045 4.045 9 C -0.297 4.297 10 C 0.275 3.725 11 C -0.432 4.432 12 H 0.082 0.918 13 C 0.072 3.928 14 N -0.716 5.716 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.507 5.507 20 C 0.065 3.935 21 C -0.108 4.108 22 C -0.048 4.048 23 H 0.074 0.926 24 C -0.062 4.062 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.123 4.123 29 C -0.112 4.112 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.270 0.730 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 2.811 14.138 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.041 4.041 5 N -0.195 5.195 6 C 0.085 3.915 7 C -0.347 4.347 8 C -0.070 4.070 9 C -0.320 4.320 10 C 0.149 3.851 11 C -0.464 4.464 12 H 0.100 0.900 13 C -0.153 4.153 14 N -0.337 5.337 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.187 1.187 19 N -0.225 5.225 20 C -0.062 4.062 21 C -0.146 4.146 22 C -0.067 4.067 23 H 0.092 0.908 24 C -0.062 4.062 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.150 4.150 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.920 3.909 14.442 15.466 hybrid contribution 0.940 -0.419 -0.766 1.282 sum -2.980 3.490 13.676 14.426 Atomic orbital electron populations 1.21909 0.95078 1.01989 1.00727 1.21283 0.96595 0.98608 0.93649 0.91337 1.21821 0.98500 0.86998 0.96745 1.59070 1.56484 1.03201 1.00711 1.19829 0.91272 0.89343 0.91071 1.20692 1.17152 0.95995 1.00838 1.20698 0.95653 0.97261 0.93378 1.21628 1.12108 0.97470 1.00783 1.18327 0.88993 0.88436 0.89361 1.19571 1.29934 0.95356 1.01513 0.89982 1.26015 0.95228 0.98206 0.95811 1.70113 1.31031 1.11444 1.21119 0.86374 0.79937 0.79586 0.81182 1.19471 1.20216 1.18675 1.68662 1.15668 1.35640 1.02559 1.22063 0.97307 0.97742 0.89066 1.21734 1.01862 0.94283 0.96720 1.20314 0.99748 0.94772 0.91861 0.90763 1.19945 0.93922 0.96530 0.95821 1.21091 0.99819 0.97574 0.95315 1.21087 0.95717 1.00083 0.97150 1.21071 0.94331 0.99516 1.00066 1.21135 0.99636 0.97774 0.95605 1.21205 0.95320 0.99974 0.96435 0.93508 0.93034 0.91654 0.93553 0.88600 0.88782 0.88712 0.88593 0.91862 0.94765 0.90426 0.91791 0.90648 0.86308 0.86504 0.86630 0.86427 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.41 37.16 0.28 -1.78 16 2 C -0.08 -1.28 2.76 -90.54 -0.25 -1.53 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.09 1.71 4.08 -3.84 -0.02 1.69 16 5 N -0.48 -9.53 4.08 -173.21 -0.71 -10.24 16 6 C 0.32 7.72 6.41 -155.33 -1.00 6.73 16 7 C -0.32 -7.33 9.20 -38.87 -0.36 -7.68 16 8 C -0.05 -1.03 10.15 -39.39 -0.40 -1.43 16 9 C -0.30 -7.37 9.83 -38.65 -0.38 -7.75 16 10 C 0.28 7.48 6.55 -85.00 -0.56 6.92 16 11 C -0.43 -11.44 9.14 -37.74 -0.34 -11.78 16 12 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 13 C 0.07 1.80 5.50 -17.35 -0.10 1.71 16 14 N -0.72 -18.16 11.46 55.55 0.64 -17.53 16 15 Si 0.90 18.40 29.56 -169.99 -5.02 13.38 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 19 N -0.51 -13.49 6.16 -10.33 -0.06 -13.56 16 20 C 0.07 1.11 5.24 -3.83 -0.02 1.09 16 21 C -0.11 -1.48 4.67 -26.65 -0.12 -1.60 16 22 C -0.05 -0.67 2.30 -91.64 -0.21 -0.88 16 23 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 24 C -0.06 -0.78 4.60 -104.62 -0.48 -1.26 16 25 C -0.12 -1.41 9.67 -39.58 -0.38 -1.79 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 27 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 28 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 29 C -0.11 -1.31 6.91 -39.58 -0.27 -1.58 16 30 H 0.05 0.62 6.01 -51.93 -0.31 0.31 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.98 5.57 -51.93 -0.29 0.69 16 33 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.10 2.20 7.70 -51.93 -0.40 1.80 16 35 H 0.09 1.93 7.13 -52.49 -0.37 1.56 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 38 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.28 6.65 -51.93 -0.35 0.94 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.00 4.95 -51.93 -0.26 0.75 16 43 H 0.12 1.28 8.02 -52.49 -0.42 0.86 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.13 1.43 5.40 -52.49 -0.28 1.15 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -27.96 363.61 -12.35 -40.31 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.87 Total: 8.21 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -5.81 Total: -26.05 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.13 Total: -41.32 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.96 -12.35 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.130 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds