Wall clock time and date at job start Tue Mar 31 2020 14:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.53592 * 2 1 4 4 C 1.53032 * 109.50324 * 239.90040 * 2 1 3 5 5 N 1.46842 * 109.52625 * 299.23862 * 4 2 1 6 6 C 1.38819 * 111.00295 * 174.15811 * 5 4 2 7 7 C 1.39798 * 119.58448 * 179.97438 * 6 5 4 8 8 C 1.38596 * 119.48909 * 179.77158 * 7 6 5 9 9 C 1.38394 * 118.67964 * 0.50063 * 8 7 6 10 10 C 1.40549 * 119.14904 * 359.74939 * 9 8 7 11 11 C 1.41320 * 119.78510 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99521 * 359.97112 * 11 10 9 13 13 C 1.40019 * 120.00165 * 179.97438 * 11 10 9 14 14 N 1.30742 * 119.99977 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47057 * 90.00083 * 15 13 11 17 17 H 1.48501 * 109.47095 * 210.00145 * 15 13 11 18 18 H 1.48498 * 109.46764 * 329.99877 * 15 13 11 19 19 N 1.31953 * 119.58526 * 0.25922 * 6 5 4 20 20 C 1.46852 * 111.19965 * 298.25861 * 5 4 2 21 21 C 1.53033 * 109.52183 * 61.73820 * 20 5 4 22 22 C 1.53116 * 109.28067 * 300.82282 * 21 20 5 23 23 H 1.08994 * 109.52590 * 297.68504 * 22 21 20 24 24 C 1.50706 * 109.52458 * 177.55976 * 22 21 20 25 25 C 1.38229 * 120.00154 * 137.07161 * 24 22 21 26 26 C 1.38242 * 120.00068 * 180.25741 * 25 24 22 27 27 C 1.38233 * 119.99921 * 359.53124 * 26 25 24 28 28 C 1.38231 * 119.99714 * 0.42239 * 27 26 25 29 29 C 1.38232 * 119.99754 * 317.05012 * 24 22 21 30 30 H 1.09002 * 109.46968 * 306.55163 * 1 2 3 31 31 H 1.09001 * 109.46998 * 66.55352 * 1 2 3 32 32 H 1.08997 * 109.47335 * 186.55655 * 1 2 3 33 33 H 1.08999 * 109.46447 * 179.21896 * 4 2 1 34 34 H 1.09000 * 109.45326 * 59.25028 * 4 2 1 35 35 H 1.08000 * 120.25764 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.66263 * 180.25385 * 8 7 6 37 37 H 1.07997 * 120.42290 * 179.73081 * 9 8 7 38 38 H 0.97005 * 119.99807 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.45998 * 301.72793 * 20 5 4 40 40 H 1.08994 * 109.45619 * 181.75251 * 20 5 4 41 41 H 1.09003 * 109.50271 * 180.87992 * 21 20 5 42 42 H 1.08999 * 109.53538 * 60.78428 * 21 20 5 43 43 H 1.07998 * 120.00122 * 359.97438 * 25 24 22 44 44 H 1.08004 * 119.99818 * 179.72863 * 26 25 24 45 45 H 1.07994 * 120.00144 * 180.21961 * 27 26 25 46 46 H 1.07998 * 119.99732 * 179.78962 * 28 27 26 47 47 H 1.08000 * 120.00547 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7234 -1.2480 5 7 1.5675 -2.1134 -1.2379 6 6 1.9027 -2.7618 -2.4187 7 6 1.5374 -4.0990 -2.5996 8 6 1.8689 -4.7430 -3.7812 9 6 2.5657 -4.0396 -4.7481 10 6 2.9092 -2.6986 -4.5048 11 6 3.6202 -1.9675 -5.4831 12 1 3.8982 -2.4396 -6.4139 13 6 3.9642 -0.6311 -5.2458 14 7 3.6272 -0.0595 -4.1192 15 14 4.9047 0.3351 -6.5387 16 1 3.9442 1.0040 -7.4526 17 1 5.7503 1.3588 -5.8737 18 1 5.7671 -0.5896 -7.3174 19 7 2.5671 -2.1098 -3.3540 20 6 2.0846 -2.8420 -0.0724 21 6 1.5750 -2.1818 1.2107 22 6 2.0412 -0.7239 1.2488 23 1 3.1304 -0.6902 1.2702 24 6 1.4923 -0.0515 2.4808 25 6 2.3007 0.7806 3.2323 26 6 1.7988 1.3931 4.3654 27 6 0.4855 1.1812 4.7414 28 6 -0.3231 0.3499 3.9893 29 6 0.1802 -0.2665 2.8589 30 1 -0.3633 0.6120 0.8256 31 1 -0.3633 0.4089 -0.9428 32 1 -0.3634 -1.0209 0.1173 33 1 3.1308 -0.7110 -1.2544 34 1 1.6668 -0.2188 -2.1388 35 1 0.9974 -4.6250 -1.8262 36 1 1.5924 -5.7745 -3.9426 37 1 2.8422 -4.5151 -5.6775 38 1 3.8653 0.8664 -3.9550 39 1 3.1743 -2.8196 -0.0842 40 1 1.7422 -3.8761 -0.1095 41 1 1.9716 -2.7134 2.0758 42 1 0.4857 -2.2162 1.2305 43 1 3.3258 0.9485 2.9369 44 1 2.4317 2.0398 4.9550 45 1 0.0923 1.6626 5.6246 46 1 -1.3482 0.1817 4.2850 47 1 -0.4517 -0.9160 2.2714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:52 Heat of formation + Delta-G solvation = 51.459702 kcal Electronic energy + Delta-G solvation = -27281.370969 eV Core-core repulsion = 23813.942761 eV Total energy + Delta-G solvation = -3467.428208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.51526 -40.23797 -38.78365 -35.98759 -35.00406 -32.94573 -32.22610 -31.80421 -31.58438 -29.94668 -28.07968 -27.24669 -25.47978 -24.27953 -23.20705 -22.81940 -22.33019 -21.77047 -19.57480 -19.29979 -18.06209 -17.56752 -16.67280 -16.39445 -16.32822 -16.09608 -16.01868 -15.46065 -15.29994 -15.06767 -14.86514 -14.53795 -14.32473 -14.11882 -13.78298 -13.70932 -13.52840 -13.17814 -12.87983 -12.83116 -12.76904 -12.63276 -12.54398 -12.36478 -12.22679 -11.95757 -11.87961 -11.75444 -11.52905 -11.35643 -11.20053 -10.99302 -10.41872 -9.89793 -9.70160 -9.51588 -9.43651 -8.72427 -8.27678 -6.49378 0.53928 0.58980 0.90666 1.20253 1.39264 1.50846 1.53762 2.21994 2.79182 2.95485 3.03327 3.67973 3.74901 3.89547 3.99791 4.14264 4.17979 4.24360 4.31412 4.37570 4.38565 4.41241 4.51632 4.61873 4.65088 4.70405 4.80254 4.82212 4.86272 4.92694 4.94620 4.98455 5.01326 5.12341 5.14152 5.21820 5.24547 5.26579 5.28425 5.33764 5.46658 5.56320 5.67654 5.69211 5.71205 5.85620 5.90624 6.01769 6.05078 6.21363 6.35748 6.52886 6.80229 7.08092 8.20173 8.45067 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.003536 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.279643 B = 7917.110860 C = 9168.222853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 H 0.067 0.933 4 C 0.104 3.896 5 N -0.470 5.470 6 C 0.304 3.696 7 C -0.322 4.322 8 C -0.042 4.042 9 C -0.322 4.322 10 C 0.240 3.760 11 C -0.468 4.468 12 H 0.085 0.915 13 C 0.028 3.972 14 N -0.744 5.744 15 Si 0.983 3.017 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.258 1.258 19 N -0.534 5.534 20 C 0.065 3.935 21 C -0.098 4.098 22 C -0.040 4.040 23 H 0.065 0.935 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.120 4.120 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.275 0.725 39 H 0.016 0.984 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 2.996 16.318 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.024 4.024 5 N -0.189 5.189 6 C 0.066 3.934 7 C -0.347 4.347 8 C -0.067 4.067 9 C -0.345 4.345 10 C 0.114 3.886 11 C -0.499 4.499 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.365 5.365 15 Si 0.803 3.197 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.182 1.182 19 N -0.253 5.253 20 C -0.061 4.061 21 C -0.135 4.135 22 C -0.059 4.059 23 H 0.083 0.917 24 C -0.075 4.075 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.138 4.138 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.868 4.075 16.645 17.815 hybrid contribution 1.172 -0.518 -1.334 1.850 sum -3.696 3.557 15.311 16.148 Atomic orbital electron populations 1.21814 0.93929 1.02257 1.00621 1.21178 0.97377 0.98146 0.92641 0.91450 1.21536 0.96242 0.87226 0.97394 1.59165 1.55942 1.03267 1.00488 1.20389 0.90826 0.90299 0.91892 1.21040 1.16537 0.95599 1.01530 1.21104 0.94209 0.98821 0.92542 1.21806 1.13463 0.97145 1.02041 1.18822 0.89893 0.89850 0.90069 1.19897 1.31365 0.96726 1.01930 0.89732 1.26879 0.95871 0.98647 0.98010 1.70225 1.31645 1.11898 1.22779 0.85205 0.78420 0.77894 0.78148 1.18941 1.19347 1.18205 1.68653 1.16805 1.36729 1.03097 1.22194 0.96359 0.98339 0.89255 1.21697 1.02414 0.94011 0.95381 1.20153 0.99215 0.94815 0.91675 0.91691 1.19774 0.94647 0.97564 0.95524 1.21244 1.00082 0.97844 0.95979 1.21372 0.96397 0.99935 0.96749 1.21435 0.94036 0.98890 1.00590 1.21434 1.00785 0.97233 0.94993 1.21294 0.94911 1.00413 0.97152 0.91483 0.94690 0.91620 0.96862 0.92504 0.86111 0.84974 0.87757 0.91409 0.96511 0.89520 0.89506 0.89604 0.86161 0.84529 0.84152 0.84267 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 7.41 71.98 0.53 -3.20 16 2 C -0.07 -2.36 2.76 -10.74 -0.03 -2.39 16 3 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.10 4.33 4.08 86.32 0.35 4.68 16 5 N -0.47 -19.28 4.08 -701.92 -2.86 -22.14 16 6 C 0.30 14.96 6.41 133.42 0.86 15.81 16 7 C -0.32 -14.53 9.20 22.73 0.21 -14.32 16 8 C -0.04 -1.91 10.15 22.39 0.23 -1.68 16 9 C -0.32 -16.36 9.83 22.87 0.22 -16.13 16 10 C 0.24 13.64 6.55 40.18 0.26 13.90 16 11 C -0.47 -25.87 9.14 23.46 0.21 -25.65 16 12 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 13 C 0.03 1.45 5.50 85.29 0.47 1.92 16 14 N -0.74 -39.70 11.46 21.83 0.25 -39.45 16 15 Si 0.98 38.76 29.56 68.60 2.03 40.79 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 N -0.53 -29.84 6.16 -186.59 -1.15 -30.99 16 20 C 0.06 2.18 5.24 86.32 0.45 2.64 16 21 C -0.10 -2.52 4.67 30.64 0.14 -2.37 16 22 C -0.04 -1.08 2.30 -11.46 -0.03 -1.10 16 23 H 0.06 1.86 7.97 -2.39 -0.02 1.84 16 24 C -0.08 -1.75 4.60 -19.87 -0.09 -1.84 16 25 C -0.13 -2.91 9.67 22.27 0.22 -2.70 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 27 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 28 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 29 C -0.12 -2.50 6.91 22.27 0.15 -2.34 16 30 H 0.07 1.67 6.01 -2.39 -0.01 1.66 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.88 5.57 -2.39 -0.01 1.87 16 33 H 0.01 0.62 8.11 -2.39 -0.02 0.60 16 34 H 0.06 2.80 7.70 -2.39 -0.02 2.78 16 35 H 0.12 4.71 7.13 -2.91 -0.02 4.69 16 36 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 37 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.28 13.41 8.29 -92.70 -0.77 12.65 16 39 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 2.74 6.65 -2.39 -0.02 2.73 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.08 4.95 -2.39 -0.01 2.07 16 43 H 0.12 2.49 8.02 -2.91 -0.02 2.47 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.13 2.56 5.40 -2.91 -0.02 2.55 16 Total: -1.00 -63.83 363.61 4.07 -59.77 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.96 Total: 32.92 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 4.84 Total: -40.89 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.76 Total: -92.58 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -63.83 4.07 -59.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.228 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds