Wall clock time and date at job start Tue Mar 31 2020 14:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53040 * 109.50507 * 120.11099 * 2 1 3 5 5 N 1.46846 * 109.52674 * 179.11870 * 4 2 1 6 6 C 1.38823 * 111.00091 * 174.16088 * 5 4 2 7 7 C 1.39795 * 119.58443 * 179.97438 * 6 5 4 8 8 C 1.38597 * 119.48924 * 179.79100 * 7 6 5 9 9 C 1.38391 * 118.68098 * 0.47599 * 8 7 6 10 10 C 1.40553 * 119.14579 * 359.74697 * 9 8 7 11 11 C 1.41318 * 119.78034 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00082 * 0.02562 * 11 10 9 13 13 C 1.40030 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.30747 * 119.99597 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47270 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47405 * 120.00346 * 15 13 11 18 18 H 1.48503 * 109.47188 * 240.00091 * 15 13 11 19 19 N 1.31959 * 119.58208 * 0.25670 * 6 5 4 20 20 C 1.46842 * 111.19841 * 298.26229 * 5 4 2 21 21 C 1.53029 * 109.52640 * 61.74056 * 20 5 4 22 22 C 1.53119 * 109.50522 * 239.91686 * 2 1 3 23 23 H 1.08995 * 109.52162 * 302.36894 * 22 2 1 24 24 C 1.50695 * 109.52468 * 62.50102 * 22 2 1 25 25 C 1.38236 * 120.00194 * 59.72513 * 24 22 2 26 26 C 1.38230 * 120.00166 * 179.77086 * 25 24 22 27 27 C 1.38241 * 119.99783 * 0.48353 * 26 25 24 28 28 C 1.38229 * 120.00147 * 359.78946 * 27 26 25 29 29 C 1.38238 * 120.00187 * 359.96147 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 33 33 H 1.09000 * 109.46220 * 299.14096 * 4 2 1 34 34 H 1.09003 * 109.46001 * 59.10214 * 4 2 1 35 35 H 1.07995 * 120.25592 * 0.02562 * 7 6 5 36 36 H 1.07992 * 120.65853 * 180.22501 * 8 7 6 37 37 H 1.07997 * 120.42286 * 179.72468 * 9 8 7 38 38 H 0.97000 * 119.99632 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.46000 * 301.71954 * 20 5 4 40 40 H 1.09007 * 109.45229 * 181.75279 * 20 5 4 41 41 H 1.09001 * 109.50687 * 180.87696 * 21 20 5 42 42 H 1.09008 * 109.50751 * 60.75732 * 21 20 5 43 43 H 1.08004 * 119.99558 * 0.02562 * 25 24 22 44 44 H 1.08003 * 120.00522 * 180.25534 * 26 25 24 45 45 H 1.08003 * 119.99746 * 179.77447 * 27 26 25 46 46 H 1.08000 * 120.00657 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00753 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7237 1.2479 5 7 3.5093 -0.7424 1.2378 6 6 4.0082 -1.2754 2.4185 7 6 5.3906 -1.3784 2.5993 8 6 5.8866 -1.9068 3.7807 9 6 4.9907 -2.3284 4.7476 10 6 3.6120 -2.2030 4.5045 11 6 2.6853 -2.6297 5.4823 12 1 3.0372 -3.0501 6.4128 13 6 1.3107 -2.5075 5.2447 14 7 0.8847 -1.9990 4.1180 15 14 0.0857 -3.0708 6.5375 16 1 0.8180 -3.6045 7.7141 17 1 -0.7545 -1.9208 6.9579 18 1 -0.7803 -4.1347 5.9686 19 7 3.1715 -1.6837 3.3537 20 6 4.0229 -1.4730 0.0721 21 6 3.5712 -0.7717 -1.2108 22 6 2.0412 -0.7235 -1.2489 23 1 1.6444 -1.7384 -1.2699 24 6 1.5912 0.0189 -2.4807 25 6 1.9715 1.3340 -2.6726 26 6 1.5627 2.0135 -3.8048 27 6 0.7652 1.3811 -4.7402 28 6 0.3802 0.0678 -4.5456 29 6 0.7933 -0.6134 -3.4159 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5125 -0.8908 32 1 -0.3634 0.5152 0.8892 33 1 1.6905 -0.2028 2.1389 34 1 1.6647 -1.7467 1.2540 35 1 6.0668 -1.0451 1.8261 36 1 6.9511 -1.9917 3.9418 37 1 5.3463 -2.7486 5.6767 38 1 -0.0674 -1.9147 3.9533 39 1 3.6375 -2.4925 0.0838 40 1 5.1121 -1.4961 0.1093 41 1 3.9396 -1.3229 -2.0760 42 1 3.9678 0.2436 -1.2297 43 1 2.5915 1.8292 -1.9399 44 1 1.8632 3.0397 -3.9568 45 1 0.4427 1.9132 -5.6231 46 1 -0.2432 -0.4262 -5.2761 47 1 0.4923 -1.6392 -3.2635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:56 Heat of formation + Delta-G solvation = 56.290450 kcal Electronic energy + Delta-G solvation = -27164.167262 eV Core-core repulsion = 23696.948531 eV Total energy + Delta-G solvation = -3467.218731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.07838 -38.83065 -37.28211 -34.47244 -33.28231 -31.97333 -30.91902 -30.60237 -30.10860 -28.44916 -26.45140 -25.46361 -24.09364 -22.69820 -22.01394 -21.51293 -20.88304 -20.03437 -18.98732 -17.43014 -16.90289 -16.08101 -15.29584 -14.98034 -14.78497 -14.74545 -14.46868 -14.09203 -13.87564 -13.72383 -13.42967 -13.29473 -13.15446 -12.63674 -12.55276 -12.21145 -12.02089 -11.98029 -11.62099 -11.40538 -11.24817 -11.18929 -11.15879 -11.00406 -10.68389 -10.66743 -10.54561 -10.31017 -10.09733 -9.96203 -9.77282 -9.42891 -8.91693 -8.66251 -8.59013 -8.00933 -7.58292 -6.91918 -6.41242 -4.51563 1.38123 1.40274 2.73853 3.02550 3.08683 3.12530 3.21311 3.79650 3.94147 4.49384 4.70766 4.80383 4.82544 4.97307 5.07818 5.16289 5.20948 5.44024 5.47786 5.53590 5.56637 5.72676 5.85671 5.87602 5.97219 5.97829 6.00518 6.09037 6.11231 6.13739 6.20402 6.29417 6.37424 6.41597 6.49791 6.51155 6.51771 6.57925 6.67494 6.73780 6.80308 6.82443 6.98714 7.02423 7.15547 7.21372 7.51266 7.72432 7.81044 7.87567 8.20649 8.39834 8.71070 9.00367 10.09812 10.30668 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003567 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.876759 B = 7847.762658 C = 9219.021184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.072 0.928 4 C 0.087 3.913 5 N -0.481 5.481 6 C 0.323 3.677 7 C -0.322 4.322 8 C -0.045 4.045 9 C -0.297 4.297 10 C 0.275 3.725 11 C -0.432 4.432 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.714 5.714 15 Si 0.904 3.096 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.507 5.507 20 C 0.066 3.934 21 C -0.105 4.105 22 C -0.048 4.048 23 H 0.074 0.926 24 C -0.058 4.058 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.121 4.121 29 C -0.120 4.120 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.270 0.730 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 4.023 -14.150 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.040 4.040 5 N -0.199 5.199 6 C 0.085 3.915 7 C -0.347 4.347 8 C -0.070 4.070 9 C -0.320 4.320 10 C 0.148 3.852 11 C -0.463 4.463 12 H 0.101 0.899 13 C -0.153 4.153 14 N -0.336 5.336 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.225 5.225 20 C -0.061 4.061 21 C -0.143 4.143 22 C -0.067 4.067 23 H 0.092 0.908 24 C -0.058 4.058 25 C -0.131 4.131 26 C -0.138 4.138 27 C -0.151 4.151 28 C -0.139 4.139 29 C -0.138 4.138 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.038 4.626 -14.446 15.469 hybrid contribution 0.136 -1.001 0.735 1.249 sum -2.902 3.625 -13.710 14.475 Atomic orbital electron populations 1.21721 0.95141 1.01687 1.01183 1.21328 0.95273 0.99824 0.93765 0.90991 1.21843 0.85123 1.00315 0.96766 1.59083 1.10041 1.49992 1.00825 1.19820 0.89787 0.90879 0.91034 1.20696 0.94065 1.19058 1.00868 1.20699 0.97300 0.95627 0.93366 1.21633 0.94734 1.14797 1.00787 1.18337 0.89606 0.87859 0.89353 1.19609 0.90222 1.34952 1.01546 0.89928 1.26023 0.99514 0.93939 0.95826 1.70126 1.15065 1.27303 1.21108 0.86325 0.80302 0.79058 0.81444 1.18509 1.19883 1.19950 1.68667 1.34599 1.16690 1.02551 1.22063 1.00186 0.94869 0.89018 1.21657 0.94238 1.01657 0.96708 1.20366 0.95810 0.98693 0.91805 0.90758 1.19936 0.96161 0.94218 0.95519 1.21068 1.00201 0.94334 0.97527 1.21125 0.98370 0.99740 0.94559 1.21073 0.99335 0.95239 0.99452 1.21090 1.00246 0.94897 0.97674 1.21096 0.98461 0.99934 0.94324 0.92876 0.93174 0.92492 0.88664 0.93433 0.88764 0.88684 0.88566 0.91917 0.94740 0.90406 0.91710 0.91031 0.85923 0.86410 0.86610 0.86502 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.98 37.16 0.33 -1.68 16 2 C -0.08 -1.29 2.24 -90.54 -0.20 -1.49 16 3 H 0.07 1.13 7.30 -51.93 -0.38 0.76 16 4 C 0.09 1.72 3.93 -3.83 -0.02 1.71 16 5 N -0.48 -9.83 4.67 -173.20 -0.81 -10.64 16 6 C 0.32 7.80 6.41 -155.32 -1.00 6.80 16 7 C -0.32 -7.38 9.20 -38.87 -0.36 -7.74 16 8 C -0.05 -1.04 10.15 -39.39 -0.40 -1.44 16 9 C -0.30 -7.38 9.83 -38.65 -0.38 -7.76 16 10 C 0.27 7.48 6.55 -85.00 -0.56 6.92 16 11 C -0.43 -11.42 9.14 -37.74 -0.34 -11.77 16 12 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 13 C 0.07 1.79 5.50 -17.34 -0.10 1.69 16 14 N -0.71 -18.10 11.46 55.55 0.64 -17.47 16 15 Si 0.90 18.39 29.56 -169.99 -5.02 13.36 16 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 N -0.51 -13.55 6.16 -10.33 -0.06 -13.61 16 20 C 0.07 1.13 5.24 -3.84 -0.02 1.11 16 21 C -0.10 -1.45 5.22 -26.65 -0.14 -1.59 16 22 C -0.05 -0.66 1.94 -91.65 -0.18 -0.84 16 23 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 24 C -0.06 -0.72 3.66 -104.62 -0.38 -1.11 16 25 C -0.11 -1.35 8.66 -39.59 -0.34 -1.69 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 28 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 29 C -0.12 -1.38 9.67 -39.58 -0.38 -1.77 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.67 7.30 -51.93 -0.38 0.29 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 2.19 7.70 -51.93 -0.40 1.79 16 34 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.09 1.95 7.13 -52.49 -0.37 1.58 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.27 6.23 8.29 -40.82 -0.34 5.89 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.30 6.65 -51.92 -0.35 0.96 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.98 7.32 -51.92 -0.38 0.60 16 43 H 0.12 1.43 7.06 -52.48 -0.37 1.06 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -28.09 373.02 -12.52 -40.61 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.23 Total: 7.83 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -5.65 Total: -25.70 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.24 Total: -41.72 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.09 -12.52 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.899 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds