Wall clock time and date at job start Tue Mar 31 2020 14:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53040 * 109.50507 * 120.11099 * 2 1 3 5 5 N 1.46846 * 109.52674 * 179.11870 * 4 2 1 6 6 C 1.38823 * 111.00091 * 174.16088 * 5 4 2 7 7 C 1.39795 * 119.58443 * 179.97438 * 6 5 4 8 8 C 1.38597 * 119.48924 * 179.79100 * 7 6 5 9 9 C 1.38391 * 118.68098 * 0.47599 * 8 7 6 10 10 C 1.40553 * 119.14579 * 359.74697 * 9 8 7 11 11 C 1.41318 * 119.78034 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00082 * 0.02562 * 11 10 9 13 13 C 1.40030 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.30747 * 119.99597 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47270 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47405 * 120.00346 * 15 13 11 18 18 H 1.48503 * 109.47188 * 240.00091 * 15 13 11 19 19 N 1.31959 * 119.58208 * 0.25670 * 6 5 4 20 20 C 1.46842 * 111.19841 * 298.26229 * 5 4 2 21 21 C 1.53029 * 109.52640 * 61.74056 * 20 5 4 22 22 C 1.53119 * 109.50522 * 239.91686 * 2 1 3 23 23 H 1.08995 * 109.52162 * 302.36894 * 22 2 1 24 24 C 1.50695 * 109.52468 * 62.50102 * 22 2 1 25 25 C 1.38236 * 120.00194 * 59.72513 * 24 22 2 26 26 C 1.38230 * 120.00166 * 179.77086 * 25 24 22 27 27 C 1.38241 * 119.99783 * 0.48353 * 26 25 24 28 28 C 1.38229 * 120.00147 * 359.78946 * 27 26 25 29 29 C 1.38238 * 120.00187 * 359.96147 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 33 33 H 1.09000 * 109.46220 * 299.14096 * 4 2 1 34 34 H 1.09003 * 109.46001 * 59.10214 * 4 2 1 35 35 H 1.07995 * 120.25592 * 0.02562 * 7 6 5 36 36 H 1.07992 * 120.65853 * 180.22501 * 8 7 6 37 37 H 1.07997 * 120.42286 * 179.72468 * 9 8 7 38 38 H 0.97000 * 119.99632 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.46000 * 301.71954 * 20 5 4 40 40 H 1.09007 * 109.45229 * 181.75279 * 20 5 4 41 41 H 1.09001 * 109.50687 * 180.87696 * 21 20 5 42 42 H 1.09008 * 109.50751 * 60.75732 * 21 20 5 43 43 H 1.08004 * 119.99558 * 0.02562 * 25 24 22 44 44 H 1.08003 * 120.00522 * 180.25534 * 26 25 24 45 45 H 1.08003 * 119.99746 * 179.77447 * 27 26 25 46 46 H 1.08000 * 120.00657 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00753 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7237 1.2479 5 7 3.5093 -0.7424 1.2378 6 6 4.0082 -1.2754 2.4185 7 6 5.3906 -1.3784 2.5993 8 6 5.8866 -1.9068 3.7807 9 6 4.9907 -2.3284 4.7476 10 6 3.6120 -2.2030 4.5045 11 6 2.6853 -2.6297 5.4823 12 1 3.0372 -3.0501 6.4128 13 6 1.3107 -2.5075 5.2447 14 7 0.8847 -1.9990 4.1180 15 14 0.0857 -3.0708 6.5375 16 1 0.8180 -3.6045 7.7141 17 1 -0.7545 -1.9208 6.9579 18 1 -0.7803 -4.1347 5.9686 19 7 3.1715 -1.6837 3.3537 20 6 4.0229 -1.4730 0.0721 21 6 3.5712 -0.7717 -1.2108 22 6 2.0412 -0.7235 -1.2489 23 1 1.6444 -1.7384 -1.2699 24 6 1.5912 0.0189 -2.4807 25 6 1.9715 1.3340 -2.6726 26 6 1.5627 2.0135 -3.8048 27 6 0.7652 1.3811 -4.7402 28 6 0.3802 0.0678 -4.5456 29 6 0.7933 -0.6134 -3.4159 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5125 -0.8908 32 1 -0.3634 0.5152 0.8892 33 1 1.6905 -0.2028 2.1389 34 1 1.6647 -1.7467 1.2540 35 1 6.0668 -1.0451 1.8261 36 1 6.9511 -1.9917 3.9418 37 1 5.3463 -2.7486 5.6767 38 1 -0.0674 -1.9147 3.9533 39 1 3.6375 -2.4925 0.0838 40 1 5.1121 -1.4961 0.1093 41 1 3.9396 -1.3229 -2.0760 42 1 3.9678 0.2436 -1.2297 43 1 2.5915 1.8292 -1.9399 44 1 1.8632 3.0397 -3.9568 45 1 0.4427 1.9132 -5.6231 46 1 -0.2432 -0.4262 -5.2761 47 1 0.4923 -1.6392 -3.2635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:55 Heat of formation + Delta-G solvation = 44.772822 kcal Electronic energy + Delta-G solvation = -27164.666704 eV Core-core repulsion = 23696.948531 eV Total energy + Delta-G solvation = -3467.718173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.36632 -40.21820 -38.73770 -36.01179 -35.02443 -33.30054 -32.27359 -31.75220 -31.59136 -29.98903 -28.04057 -27.02201 -25.53588 -23.59999 -23.55531 -22.90492 -22.26217 -21.64906 -20.27586 -19.29222 -17.93031 -17.64741 -16.58862 -16.50012 -16.26342 -16.11191 -15.91236 -15.47814 -15.28902 -14.90167 -14.88869 -14.69156 -14.20573 -14.00361 -13.75621 -13.70055 -13.62008 -13.21093 -12.97205 -12.84658 -12.81048 -12.72934 -12.57121 -12.34431 -12.23380 -12.10315 -11.86087 -11.77453 -11.54490 -11.35830 -11.25805 -11.03962 -10.45380 -9.90945 -9.73313 -9.53033 -9.43969 -8.74770 -8.27715 -6.49410 0.53954 0.58605 0.89582 1.19344 1.39719 1.51569 1.53783 2.22241 2.78454 2.95735 3.00909 3.67928 3.71774 3.87425 4.01299 4.12075 4.15872 4.23665 4.32717 4.36482 4.39587 4.41362 4.56472 4.59920 4.63027 4.68783 4.74318 4.81894 4.84927 4.89276 4.93784 4.95827 4.98202 5.08026 5.10364 5.19156 5.25049 5.25719 5.26742 5.30188 5.41789 5.52287 5.67182 5.68610 5.70846 5.85685 5.89818 6.00805 6.05130 6.20852 6.34800 6.52243 6.79943 7.07445 8.19288 8.45225 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003567 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.876759 B = 7847.762658 C = 9219.021184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.073 0.927 4 C 0.104 3.896 5 N -0.480 5.480 6 C 0.304 3.696 7 C -0.324 4.324 8 C -0.042 4.042 9 C -0.321 4.321 10 C 0.240 3.760 11 C -0.466 4.466 12 H 0.085 0.915 13 C 0.028 3.972 14 N -0.742 5.742 15 Si 0.982 3.018 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.267 1.267 19 N -0.534 5.534 20 C 0.066 3.934 21 C -0.095 4.095 22 C -0.039 4.039 23 H 0.067 0.933 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.276 0.724 39 H 0.018 0.982 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 4.703 -16.285 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 H 0.091 0.909 4 C -0.023 4.023 5 N -0.198 5.198 6 C 0.066 3.934 7 C -0.349 4.349 8 C -0.067 4.067 9 C -0.344 4.344 10 C 0.113 3.887 11 C -0.498 4.498 12 H 0.103 0.897 13 C -0.195 4.195 14 N -0.364 5.364 15 Si 0.803 3.197 16 H -0.181 1.181 17 H -0.192 1.192 18 H -0.192 1.192 19 N -0.252 5.252 20 C -0.060 4.060 21 C -0.132 4.132 22 C -0.058 4.058 23 H 0.085 0.915 24 C -0.070 4.070 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.150 4.150 28 C -0.142 4.142 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.216 5.312 -16.604 17.727 hybrid contribution 0.267 -1.160 1.296 1.760 sum -2.949 4.151 -15.307 16.132 Atomic orbital electron populations 1.21645 0.94242 1.01495 1.01535 1.21213 0.95935 0.99324 0.92643 0.90889 1.21575 0.84923 0.98383 0.97448 1.59193 1.10171 1.49759 1.00697 1.20370 0.90638 0.90568 0.91840 1.21037 0.93946 1.18284 1.01584 1.21103 0.98967 0.94079 0.92510 1.21813 0.94420 1.16110 1.02038 1.18835 0.91080 0.88702 0.90054 1.19923 0.91523 1.36400 1.01916 0.89719 1.26883 1.00828 0.93708 0.98035 1.70232 1.15766 1.27625 1.22728 0.85156 0.77445 0.78644 0.78440 1.18071 1.19223 1.19228 1.68656 1.35835 1.17647 1.03082 1.22183 1.00508 0.94173 0.89166 1.21618 0.94347 1.01860 0.95404 1.20203 0.95658 0.98245 0.91688 0.91499 1.19736 0.97529 0.94541 0.95156 1.21143 1.00660 0.94238 0.98249 1.21395 0.98093 1.00668 0.94043 1.21430 0.98393 0.95212 0.99979 1.21388 1.00059 0.95174 0.97538 1.21245 0.98451 1.00416 0.94704 0.93350 0.91429 0.93372 0.92558 0.96552 0.86215 0.84939 0.87681 0.91382 0.96344 0.89632 0.89387 0.90375 0.86180 0.84507 0.84126 0.84342 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.98 71.98 0.65 -3.18 16 2 C -0.07 -2.28 2.24 -10.74 -0.02 -2.30 16 3 H 0.07 2.30 7.30 -2.38 -0.02 2.28 16 4 C 0.10 4.36 3.93 86.33 0.34 4.70 16 5 N -0.48 -20.13 4.67 -701.89 -3.28 -23.41 16 6 C 0.30 15.11 6.41 133.42 0.86 15.96 16 7 C -0.32 -14.76 9.20 22.73 0.21 -14.55 16 8 C -0.04 -1.91 10.15 22.39 0.23 -1.68 16 9 C -0.32 -16.35 9.83 22.87 0.22 -16.12 16 10 C 0.24 13.62 6.55 40.18 0.26 13.89 16 11 C -0.47 -25.74 9.14 23.46 0.21 -25.52 16 12 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 13 C 0.03 1.43 5.50 85.29 0.47 1.90 16 14 N -0.74 -39.38 11.46 21.84 0.25 -39.13 16 15 Si 0.98 38.63 29.56 68.60 2.03 40.66 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 N -0.53 -29.90 6.16 -186.59 -1.15 -31.05 16 20 C 0.07 2.26 5.24 86.32 0.45 2.71 16 21 C -0.09 -2.51 5.22 30.65 0.16 -2.35 16 22 C -0.04 -1.06 1.94 -11.46 -0.02 -1.08 16 23 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 24 C -0.07 -1.61 3.66 -19.87 -0.07 -1.68 16 25 C -0.12 -2.72 8.66 22.27 0.19 -2.53 16 26 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 27 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 28 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 29 C -0.13 -2.73 9.67 22.27 0.22 -2.51 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.73 7.30 -2.39 -0.02 1.72 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.06 2.77 7.70 -2.39 -0.02 2.76 16 34 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.12 4.75 7.13 -2.91 -0.02 4.73 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.28 13.30 8.29 -92.71 -0.77 12.53 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 2.77 6.65 -2.38 -0.02 2.76 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.00 7.32 -2.38 -0.02 1.99 16 43 H 0.12 2.61 7.06 -2.91 -0.02 2.59 16 44 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.12 2.39 7.95 -2.91 -0.02 2.37 16 Total: -1.00 -63.80 373.02 3.82 -59.99 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.94 Total: 33.29 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 5.02 Total: -40.34 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.18 Total: -93.59 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -63.80 3.82 -59.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.758 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds