Wall clock time and date at job start Tue Mar 31 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 N 1.46499 * 109.46941 * 120.00360 * 2 1 3 5 5 C 1.38823 * 119.99790 * 274.99644 * 4 2 1 6 6 C 1.39793 * 119.58528 * 359.73162 * 5 4 2 7 7 C 1.38600 * 119.48797 * 179.78887 * 6 5 4 8 8 C 1.38388 * 118.68233 * 0.47535 * 7 6 5 9 9 C 1.40555 * 119.14806 * 359.74536 * 8 7 6 10 10 C 1.41310 * 119.78315 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00240 * 0.02562 * 10 9 8 12 12 C 1.40022 * 120.00426 * 180.02562 * 10 9 8 13 13 N 1.30749 * 119.99342 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00554 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47000 * 60.00253 * 14 12 10 16 16 H 1.48501 * 109.47243 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47096 * 300.00109 * 14 12 10 18 18 N 1.31961 * 119.58383 * 180.02562 * 5 4 2 19 19 C 1.50706 * 109.47045 * 239.99949 * 2 1 3 20 20 C 1.38260 * 120.11376 * 279.72613 * 19 2 1 21 21 C 1.37937 * 119.77085 * 179.91186 * 20 19 2 22 22 C 1.38909 * 120.53859 * 0.51738 * 21 20 19 23 23 C 1.37664 * 119.68761 * 359.45145 * 22 21 20 24 24 C 1.37940 * 120.10942 * 100.00194 * 19 2 1 25 25 C 1.50632 * 122.55861 * 180.80359 * 23 22 21 26 26 C 1.52730 * 110.59444 * 341.99505 * 25 23 22 27 27 C 1.53326 * 108.41106 * 51.10459 * 26 25 23 28 28 C 1.50632 * 117.75425 * 179.13595 * 22 21 20 29 29 H 1.09003 * 109.47098 * 59.99989 * 1 2 3 30 30 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47081 * 299.99912 * 1 2 3 32 32 H 0.97004 * 119.99897 * 95.00141 * 4 2 1 33 33 H 1.08001 * 120.25440 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.65711 * 180.22528 * 7 6 5 35 35 H 1.08002 * 120.42164 * 179.77006 * 8 7 6 36 36 H 0.97010 * 119.99764 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.11591 * 0.15821 * 20 19 2 38 38 H 1.07996 * 119.73306 * 180.24198 * 21 20 19 39 39 H 1.08001 * 119.72475 * 359.97438 * 24 19 2 40 40 H 1.08995 * 109.25625 * 102.28063 * 25 23 22 41 41 H 1.08998 * 109.25366 * 221.70923 * 25 23 22 42 42 H 1.08994 * 109.67764 * 291.37632 * 26 25 23 43 43 H 1.08998 * 109.70508 * 170.84815 * 26 25 23 44 44 H 1.08998 * 109.67958 * 170.46502 * 27 26 25 45 45 H 1.09007 * 109.68033 * 49.91771 * 27 26 25 46 46 H 1.09007 * 109.25429 * 282.51169 * 28 22 21 47 47 H 1.08999 * 109.25600 * 41.94182 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1509 0.0018 2.3920 6 6 1.8214 1.3594 2.4435 7 6 1.9504 2.0478 3.6396 8 6 2.4143 1.3666 4.7513 9 6 2.7337 0.0028 4.6346 10 6 3.2091 -0.7057 5.7611 11 1 3.3256 -0.1992 6.7079 12 6 3.5291 -2.0643 5.6499 13 7 3.3875 -2.6775 4.5039 14 14 4.1568 -3.0010 7.1391 15 1 3.1353 -2.9601 8.2163 16 1 4.4204 -4.4127 6.7610 17 1 5.4131 -2.3751 7.6242 18 7 2.5920 -0.6283 3.4642 19 6 2.0324 -0.7105 -1.2305 20 6 2.0731 -2.0920 -1.2658 21 6 2.5325 -2.7350 -2.3964 22 6 2.9649 -2.0056 -3.4967 23 6 2.9237 -0.6300 -3.4617 24 6 2.4584 0.0156 -2.3233 25 6 3.3595 0.2238 -4.6237 26 6 4.2260 -0.5834 -5.5882 27 6 3.4871 -1.8821 -5.9320 28 6 3.4725 -2.7714 -4.6904 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6319 1.1525 33 1 1.4662 1.8671 1.5590 34 1 1.6977 3.0960 3.7017 35 1 2.5292 1.8764 5.6965 36 1 3.6089 -3.6188 4.4269 37 1 1.7426 -2.6659 -0.4126 38 1 2.5603 -3.8142 -2.4248 39 1 2.4300 1.0948 -2.2933 40 1 2.4787 0.5890 -5.1516 41 1 3.9321 1.0730 -4.2509 42 1 5.1800 -0.8178 -5.1161 43 1 4.3982 -0.0074 -6.4975 44 1 4.0032 -2.3941 -6.7442 45 1 2.4644 -1.6541 -6.2323 46 1 4.4843 -3.1230 -4.4881 47 1 2.8238 -3.6287 -4.8699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:42 Heat of formation + Delta-G solvation = 41.486756 kcal Electronic energy + Delta-G solvation = -26187.992053 eV Core-core repulsion = 22720.131385 eV Total energy + Delta-G solvation = -3467.860668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.20406 -38.38741 -36.97528 -34.94021 -33.35405 -32.62015 -31.24181 -30.20692 -29.45149 -28.54119 -27.85311 -25.37948 -23.98734 -23.30619 -22.28769 -21.69162 -21.22786 -20.20775 -18.85381 -17.29849 -16.77117 -16.18953 -15.51267 -15.15215 -14.86844 -14.63845 -14.47044 -14.23955 -14.03582 -13.75095 -13.49439 -13.35038 -13.07749 -12.89694 -12.66820 -12.58988 -12.26443 -12.02965 -11.83815 -11.67427 -11.59538 -11.24632 -11.13029 -11.10397 -10.97865 -10.87564 -10.61192 -10.52177 -10.34982 -10.31487 -9.88759 -9.48096 -8.88310 -8.64124 -8.35982 -7.88071 -7.46891 -6.47670 -6.29234 -4.43980 1.40122 1.45841 2.91965 3.12063 3.14828 3.27698 3.33480 3.74857 4.00794 4.24545 4.50085 4.53568 4.67960 4.85947 4.89435 4.96090 5.01490 5.10331 5.32982 5.35116 5.37803 5.46967 5.52337 5.64620 5.67184 5.73232 5.76708 5.81409 5.85875 5.96706 6.04329 6.10179 6.10936 6.16721 6.20850 6.23070 6.46596 6.56141 6.60414 6.67374 6.75853 6.89287 6.93640 7.00454 7.09271 7.28739 7.63718 7.85173 7.96164 8.19672 8.40595 8.72160 8.83909 9.15992 10.28401 10.44043 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002894 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.508110 B = 9672.858748 C =10739.917246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 H 0.083 0.917 4 N -0.731 5.731 5 C 0.414 3.586 6 C -0.368 4.368 7 C -0.032 4.032 8 C -0.318 4.318 9 C 0.293 3.707 10 C -0.435 4.435 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.716 5.716 14 Si 0.905 3.095 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.532 5.532 19 C -0.079 4.079 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.084 4.084 23 C -0.078 4.078 24 C -0.112 4.112 25 C -0.079 4.079 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.079 4.079 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.269 0.731 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -0.016 -18.988 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.101 0.899 4 N -0.368 5.368 5 C 0.174 3.826 6 C -0.394 4.394 7 C -0.056 4.056 8 C -0.341 4.341 9 C 0.166 3.834 10 C -0.467 4.467 11 H 0.100 0.900 12 C -0.154 4.154 13 N -0.337 5.337 14 Si 0.729 3.271 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.253 5.253 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.116 4.116 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.913 -0.941 -19.214 19.258 hybrid contribution 0.093 0.113 0.821 0.834 sum -0.820 -0.828 -18.393 18.430 Atomic orbital electron populations 1.22269 0.95679 1.02148 1.01801 1.19509 0.93149 0.95955 0.81967 0.89950 1.44286 1.74229 1.12189 1.06084 1.18504 0.89698 0.87579 0.86782 1.20624 1.25207 0.95068 0.98484 1.20594 0.95221 0.96916 0.92913 1.21524 1.17436 0.97043 0.98089 1.18184 0.87270 0.88083 0.89858 1.19537 1.37272 0.94000 0.95898 0.89991 1.26043 0.94465 0.98246 0.96605 1.70151 1.29850 1.09877 1.23855 0.86446 0.80087 0.78486 0.82067 1.19039 1.20379 1.19037 1.68211 1.23404 1.36096 0.97614 1.19990 0.98533 0.94004 0.95417 1.20921 0.99587 0.94134 0.97949 1.21099 0.99765 0.99576 0.93160 1.19530 1.00218 0.92884 0.95780 1.19492 0.99902 0.93002 0.95403 1.20965 0.99647 0.99626 0.92798 1.20443 0.99658 0.97371 0.94136 1.21542 0.98893 0.96377 0.98919 1.21538 1.00904 0.96110 0.97088 1.20444 1.01238 0.97586 0.92336 0.92645 0.92633 0.91506 0.76958 0.89096 0.89014 0.88790 0.91951 0.85840 0.86323 0.86182 0.90842 0.90849 0.91613 0.91623 0.91667 0.91701 0.90840 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.39 37.16 0.35 -2.04 16 2 C 0.20 3.29 2.47 -69.08 -0.17 3.12 16 3 H 0.08 1.38 6.28 -51.93 -0.33 1.06 16 4 N -0.73 -14.97 5.19 -55.03 -0.29 -15.25 16 5 C 0.41 10.22 7.63 -155.32 -1.18 9.03 16 6 C -0.37 -8.54 8.85 -38.87 -0.34 -8.88 16 7 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 8 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 9 C 0.29 8.29 6.55 -85.00 -0.56 7.73 16 10 C -0.43 -11.96 9.14 -37.75 -0.34 -12.30 16 11 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 12 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 13 N -0.72 -19.26 11.46 55.55 0.64 -18.62 16 14 Si 0.90 19.00 29.56 -169.99 -5.02 13.97 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 N -0.53 -14.90 7.89 -10.33 -0.08 -14.98 16 19 C -0.08 -1.16 4.95 -104.72 -0.52 -1.68 16 20 C -0.11 -1.54 9.06 -39.68 -0.36 -1.90 16 21 C -0.12 -1.49 9.61 -39.44 -0.38 -1.87 16 22 C -0.08 -0.99 5.74 -104.62 -0.60 -1.59 16 23 C -0.08 -0.93 5.74 -104.62 -0.60 -1.53 16 24 C -0.11 -1.47 9.24 -39.44 -0.36 -1.83 16 25 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 26 C -0.12 -0.96 5.98 -26.70 -0.16 -1.12 16 27 C -0.12 -0.92 5.98 -26.70 -0.16 -1.08 16 28 C -0.08 -0.72 5.67 -28.06 -0.16 -0.88 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.10 7.67 -51.93 -0.40 0.70 16 32 H 0.39 8.17 6.99 -40.82 -0.29 7.89 16 33 H 0.09 1.87 6.06 -52.49 -0.32 1.55 16 34 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 37 H 0.12 1.79 6.92 -52.48 -0.36 1.42 16 38 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 39 H 0.12 1.40 8.03 -52.49 -0.42 0.98 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -30.18 376.10 -12.82 -43.00 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.15 Total: 11.87 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -6.59 Total: -25.65 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.27 Total: -48.85 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.18 -12.82 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.486 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds