Wall clock time and date at job start Tue Mar 31 2020 14:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 N 1.46499 * 109.46941 * 120.00360 * 2 1 3 5 5 C 1.38823 * 119.99790 * 274.99644 * 4 2 1 6 6 C 1.39793 * 119.58528 * 359.73162 * 5 4 2 7 7 C 1.38600 * 119.48797 * 179.78887 * 6 5 4 8 8 C 1.38388 * 118.68233 * 0.47535 * 7 6 5 9 9 C 1.40555 * 119.14806 * 359.74536 * 8 7 6 10 10 C 1.41310 * 119.78315 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00240 * 0.02562 * 10 9 8 12 12 C 1.40022 * 120.00426 * 180.02562 * 10 9 8 13 13 N 1.30749 * 119.99342 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00554 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47000 * 60.00253 * 14 12 10 16 16 H 1.48501 * 109.47243 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47096 * 300.00109 * 14 12 10 18 18 N 1.31961 * 119.58383 * 180.02562 * 5 4 2 19 19 C 1.50706 * 109.47045 * 239.99949 * 2 1 3 20 20 C 1.38260 * 120.11376 * 279.72613 * 19 2 1 21 21 C 1.37937 * 119.77085 * 179.91186 * 20 19 2 22 22 C 1.38909 * 120.53859 * 0.51738 * 21 20 19 23 23 C 1.37664 * 119.68761 * 359.45145 * 22 21 20 24 24 C 1.37940 * 120.10942 * 100.00194 * 19 2 1 25 25 C 1.50632 * 122.55861 * 180.80359 * 23 22 21 26 26 C 1.52730 * 110.59444 * 341.99505 * 25 23 22 27 27 C 1.53326 * 108.41106 * 51.10459 * 26 25 23 28 28 C 1.50632 * 117.75425 * 179.13595 * 22 21 20 29 29 H 1.09003 * 109.47098 * 59.99989 * 1 2 3 30 30 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47081 * 299.99912 * 1 2 3 32 32 H 0.97004 * 119.99897 * 95.00141 * 4 2 1 33 33 H 1.08001 * 120.25440 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.65711 * 180.22528 * 7 6 5 35 35 H 1.08002 * 120.42164 * 179.77006 * 8 7 6 36 36 H 0.97010 * 119.99764 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.11591 * 0.15821 * 20 19 2 38 38 H 1.07996 * 119.73306 * 180.24198 * 21 20 19 39 39 H 1.08001 * 119.72475 * 359.97438 * 24 19 2 40 40 H 1.08995 * 109.25625 * 102.28063 * 25 23 22 41 41 H 1.08998 * 109.25366 * 221.70923 * 25 23 22 42 42 H 1.08994 * 109.67764 * 291.37632 * 26 25 23 43 43 H 1.08998 * 109.70508 * 170.84815 * 26 25 23 44 44 H 1.08998 * 109.67958 * 170.46502 * 27 26 25 45 45 H 1.09007 * 109.68033 * 49.91771 * 27 26 25 46 46 H 1.09007 * 109.25429 * 282.51169 * 28 22 21 47 47 H 1.08999 * 109.25600 * 41.94182 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1509 0.0018 2.3920 6 6 1.8214 1.3594 2.4435 7 6 1.9504 2.0478 3.6396 8 6 2.4143 1.3666 4.7513 9 6 2.7337 0.0028 4.6346 10 6 3.2091 -0.7057 5.7611 11 1 3.3256 -0.1992 6.7079 12 6 3.5291 -2.0643 5.6499 13 7 3.3875 -2.6775 4.5039 14 14 4.1568 -3.0010 7.1391 15 1 3.1353 -2.9601 8.2163 16 1 4.4204 -4.4127 6.7610 17 1 5.4131 -2.3751 7.6242 18 7 2.5920 -0.6283 3.4642 19 6 2.0324 -0.7105 -1.2305 20 6 2.0731 -2.0920 -1.2658 21 6 2.5325 -2.7350 -2.3964 22 6 2.9649 -2.0056 -3.4967 23 6 2.9237 -0.6300 -3.4617 24 6 2.4584 0.0156 -2.3233 25 6 3.3595 0.2238 -4.6237 26 6 4.2260 -0.5834 -5.5882 27 6 3.4871 -1.8821 -5.9320 28 6 3.4725 -2.7714 -4.6904 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6319 1.1525 33 1 1.4662 1.8671 1.5590 34 1 1.6977 3.0960 3.7017 35 1 2.5292 1.8764 5.6965 36 1 3.6089 -3.6188 4.4269 37 1 1.7426 -2.6659 -0.4126 38 1 2.5603 -3.8142 -2.4248 39 1 2.4300 1.0948 -2.2933 40 1 2.4787 0.5890 -5.1516 41 1 3.9321 1.0730 -4.2509 42 1 5.1800 -0.8178 -5.1161 43 1 4.3982 -0.0074 -6.4975 44 1 4.0032 -2.3941 -6.7442 45 1 2.4644 -1.6541 -6.2323 46 1 4.4843 -3.1230 -4.4881 47 1 2.8238 -3.6287 -4.8699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:41 Heat of formation + Delta-G solvation = 28.372637 kcal Electronic energy + Delta-G solvation = -26188.560724 eV Core-core repulsion = 22720.131385 eV Total energy + Delta-G solvation = -3468.429339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.19664 -40.12891 -38.20085 -36.22410 -35.16120 -33.58573 -32.74957 -31.99993 -30.45863 -29.92477 -29.18976 -27.30598 -24.98898 -24.26647 -23.43886 -23.23964 -22.66876 -21.65879 -19.88463 -19.14295 -18.33486 -17.35040 -16.72150 -16.52030 -16.36098 -15.93844 -15.81391 -15.41553 -15.26232 -14.87479 -14.75159 -14.65913 -14.36573 -14.29606 -13.79521 -13.73223 -13.60885 -13.35962 -13.14508 -12.87451 -12.81055 -12.72340 -12.62149 -12.52137 -12.20855 -12.12581 -11.88730 -11.73118 -11.72662 -11.31921 -11.28626 -11.16839 -10.68426 -9.84454 -9.63844 -9.45075 -9.34165 -8.30072 -8.22354 -6.47598 0.37730 0.45355 1.07344 1.35644 1.40302 1.52411 1.59056 2.24587 2.57358 2.84323 2.93207 3.58715 3.75881 3.88080 4.02561 4.05353 4.06937 4.14888 4.24755 4.36335 4.37862 4.42960 4.46404 4.58408 4.66558 4.68504 4.72597 4.81368 4.90482 4.96631 4.97290 5.00717 5.01331 5.06167 5.10332 5.13931 5.16247 5.20322 5.27159 5.34510 5.36858 5.47723 5.57044 5.65565 5.73279 5.75065 5.97389 6.08968 6.11648 6.22499 6.56906 6.83279 6.93797 7.22187 8.35056 8.51579 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.002894 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.508110 B = 9672.858748 C =10739.917246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.202 3.798 3 H 0.081 0.919 4 N -0.727 5.727 5 C 0.398 3.602 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.345 4.345 9 C 0.259 3.741 10 C -0.472 4.472 11 H 0.086 0.914 12 C 0.025 3.975 13 N -0.752 5.752 14 Si 0.986 3.014 15 H -0.259 1.259 16 H -0.269 1.269 17 H -0.260 1.260 18 N -0.567 5.567 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.082 4.082 24 C -0.119 4.119 25 C -0.080 4.080 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.080 4.080 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.390 0.610 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.275 0.725 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 0.257 -21.070 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.096 3.904 3 H 0.099 0.901 4 N -0.362 5.362 5 C 0.158 3.842 6 C -0.391 4.391 7 C -0.054 4.054 8 C -0.368 4.368 9 C 0.132 3.868 10 C -0.504 4.504 11 H 0.104 0.896 12 C -0.196 4.196 13 N -0.374 5.374 14 Si 0.806 3.194 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.184 1.184 18 N -0.290 5.290 19 C -0.095 4.095 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.117 4.117 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.677 -0.646 -21.344 21.365 hybrid contribution -0.023 0.080 1.291 1.294 sum -0.699 -0.566 -20.053 20.073 Atomic orbital electron populations 1.22175 0.94499 1.02062 1.02270 1.19671 0.93978 0.95578 0.81145 0.90123 1.44492 1.73548 1.12019 1.06125 1.18939 0.89332 0.88674 0.87291 1.20961 1.23995 0.94593 0.99538 1.21014 0.93668 0.98634 0.92093 1.21686 1.19022 0.96636 0.99469 1.18675 0.88106 0.89525 0.90518 1.19906 1.38916 0.95410 0.96199 0.89564 1.26968 0.94128 0.98629 0.99917 1.70261 1.30622 1.10403 1.26118 0.85222 0.79444 0.77034 0.77686 1.18374 1.19330 1.18413 1.68180 1.24926 1.37370 0.98486 1.19856 1.00245 0.94143 0.95263 1.20928 1.00872 0.94226 0.98411 1.21331 0.99452 1.00538 0.92936 1.19926 0.99139 0.93221 0.96372 1.19874 0.98915 0.93489 0.95884 1.21172 0.99425 1.00359 0.92742 1.20521 1.00481 0.97179 0.93471 1.21561 0.98201 0.96610 0.99286 1.21549 1.01245 0.95808 0.96778 1.20526 1.01443 0.97920 0.91828 0.89839 0.93049 0.93162 0.77539 0.86275 0.85261 0.87996 0.91449 0.87115 0.84854 0.84867 0.89557 0.90436 0.92342 0.89716 0.89888 0.91551 0.90472 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.39 71.98 0.68 -3.76 16 2 C 0.20 6.59 2.47 44.25 0.11 6.70 16 3 H 0.08 2.64 6.28 -2.39 -0.02 2.63 16 4 N -0.73 -30.60 5.19 -328.01 -1.70 -32.31 16 5 C 0.40 20.13 7.63 133.42 1.02 21.14 16 6 C -0.37 -16.83 8.85 22.73 0.20 -16.63 16 7 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 8 C -0.35 -18.12 9.83 22.87 0.22 -17.90 16 9 C 0.26 15.21 6.55 40.18 0.26 15.47 16 10 C -0.47 -26.93 9.14 23.46 0.21 -26.72 16 11 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 12 C 0.03 1.34 5.50 85.29 0.47 1.81 16 13 N -0.75 -41.90 11.46 21.84 0.25 -41.65 16 14 Si 0.99 39.67 29.56 68.60 2.03 41.69 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 16 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 N -0.57 -33.02 7.89 -186.59 -1.47 -34.49 16 19 C -0.09 -2.76 4.95 -19.93 -0.10 -2.86 16 20 C -0.13 -3.67 9.06 22.20 0.20 -3.47 16 21 C -0.12 -3.09 9.61 22.36 0.21 -2.88 16 22 C -0.09 -1.91 5.74 -19.86 -0.11 -2.03 16 23 C -0.08 -1.81 5.74 -19.86 -0.11 -1.92 16 24 C -0.12 -2.98 9.24 22.36 0.21 -2.77 16 25 C -0.08 -1.26 5.67 29.74 0.17 -1.10 16 26 C -0.12 -1.55 5.98 30.61 0.18 -1.37 16 27 C -0.12 -1.44 5.98 30.61 0.18 -1.26 16 28 C -0.08 -1.27 5.67 29.74 0.17 -1.10 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 32 H 0.39 16.97 6.99 -92.71 -0.65 16.32 16 33 H 0.12 4.72 6.06 -2.91 -0.02 4.70 16 34 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 35 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.28 13.91 8.29 -92.70 -0.77 13.14 16 37 H 0.11 3.41 6.92 -2.91 -0.02 3.39 16 38 H 0.13 2.79 8.05 -2.91 -0.02 2.76 16 39 H 0.13 2.89 8.03 -2.91 -0.02 2.86 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 42 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.82 8.10 -2.38 -0.02 0.81 16 46 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -67.63 376.10 3.83 -63.80 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: 0.32 Total: 44.76 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 4.40 Total: -41.80 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -2.92 Total: -108.44 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -67.63 3.83 -63.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.169 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds