Wall clock time and date at job start Tue Mar 31 2020 14:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09002 * 110.06877 * 2 1 4 4 C 1.54001 * 109.91615 * 121.20420 * 2 1 3 5 5 H 1.09002 * 110.30611 * 239.58981 * 4 2 1 6 6 C 1.52999 * 110.30789 * 1.65980 * 4 2 1 7 7 C 1.50700 * 109.47048 * 185.00399 * 6 4 2 8 8 C 1.38242 * 119.99618 * 269.72602 * 7 6 4 9 9 C 1.38233 * 119.99507 * 179.76238 * 8 7 6 10 10 C 1.38237 * 120.00175 * 0.49178 * 9 8 7 11 11 C 1.38231 * 120.00063 * 359.78282 * 10 9 8 12 12 C 1.38230 * 120.00201 * 89.99716 * 7 6 4 13 13 C 1.54593 * 105.14019 * 120.57900 * 4 2 1 14 14 C 1.54939 * 102.92539 * 21.95472 * 13 4 2 15 15 N 1.47909 * 109.91956 * 238.79020 * 2 1 3 16 16 C 1.38818 * 110.99874 * 94.80105 * 15 2 1 17 17 C 1.39792 * 119.58619 * 179.72744 * 16 15 2 18 18 C 1.38590 * 119.49337 * 180.25854 * 17 16 15 19 19 C 1.38391 * 118.68241 * 0.02562 * 18 17 16 20 20 C 1.40549 * 119.14673 * 0.02562 * 19 18 17 21 21 C 1.41315 * 119.78490 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00031 * 150.03535 * 21 20 19 23 23 C 1.40023 * 119.99702 * 330.03733 * 21 20 19 24 24 N 1.30745 * 120.00041 * 161.71387 * 23 21 20 25 25 Si 1.86803 * 120.00223 * 341.71308 * 23 21 20 26 26 H 1.48499 * 109.47228 * 95.41920 * 25 23 21 27 27 H 1.48504 * 109.47133 * 215.41829 * 25 23 21 28 28 H 1.48496 * 109.46668 * 335.41587 * 25 23 21 29 29 N 1.31957 * 119.58373 * 0.02562 * 16 15 2 30 30 H 1.08995 * 109.47735 * 179.75371 * 1 2 3 31 31 H 1.09000 * 109.47496 * 299.75706 * 1 2 3 32 32 H 1.09004 * 109.47368 * 59.75225 * 1 2 3 33 33 H 1.09003 * 109.46890 * 305.00199 * 6 4 2 34 34 H 1.08992 * 109.47043 * 65.00210 * 6 4 2 35 35 H 1.07995 * 120.00119 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.99535 * 180.24874 * 9 8 7 37 37 H 1.08004 * 119.99429 * 179.76434 * 10 9 8 38 38 H 1.07994 * 119.99994 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.00333 * 0.02562 * 12 7 6 40 40 H 1.09000 * 110.72574 * 140.31571 * 13 4 2 41 41 H 1.09007 * 110.71998 * 263.42210 * 13 4 2 42 42 H 1.09000 * 110.66937 * 204.15768 * 14 13 4 43 43 H 1.08997 * 110.66675 * 81.02315 * 14 13 4 44 44 H 1.08001 * 120.25315 * 0.25685 * 17 16 15 45 45 H 1.08003 * 120.65682 * 180.02562 * 18 17 16 46 46 H 1.07997 * 120.42618 * 180.02562 * 19 18 17 47 47 H 0.96998 * 120.00128 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0545 -0.7501 1.2384 5 1 2.6699 -0.0890 1.8486 6 6 0.8869 -1.2975 2.0618 7 6 1.4140 -1.9196 3.3291 8 6 1.7503 -3.2603 3.3530 9 6 2.2384 -3.8298 4.5141 10 6 2.3807 -3.0611 5.6542 11 6 2.0391 -1.7219 5.6319 12 6 1.5559 -1.1511 4.4693 13 6 2.9058 -1.9117 0.6763 14 6 3.2680 -1.4186 -0.7471 15 7 2.0338 -0.7206 -1.1893 16 6 2.3053 0.1608 -2.2269 17 6 2.7980 -0.3310 -3.4392 18 6 3.0735 0.5512 -4.4719 19 6 2.8508 1.9019 -4.2689 20 6 2.3550 2.3348 -3.0270 21 6 2.1222 3.7109 -2.8053 22 1 1.3432 4.0241 -2.1260 23 6 2.9014 4.6682 -3.4663 24 7 2.4827 5.9036 -3.5556 25 14 4.5393 4.1804 -4.2206 26 1 4.3486 3.8709 -5.6604 27 1 5.5031 5.3012 -4.0786 28 1 5.0682 2.9813 -3.5222 29 7 2.1005 1.4529 -2.0545 30 1 -0.3634 -1.0276 -0.0044 31 1 -0.3634 0.5100 0.8921 32 1 -0.3634 0.5177 -0.8878 33 1 0.2061 -0.4839 2.3123 34 1 0.3546 -2.0509 1.4813 35 1 1.6349 -3.8618 2.4635 36 1 2.5050 -4.8763 4.5316 37 1 2.7585 -3.5071 6.5624 38 1 2.1498 -1.1215 6.5227 39 1 1.2887 -0.1048 4.4521 40 1 3.8051 -2.0558 1.2751 41 1 2.3221 -2.8313 0.6320 42 1 3.4886 -2.2617 -1.4018 43 1 4.1097 -0.7269 -0.7120 44 1 2.9629 -1.3903 -3.5699 45 1 3.4544 0.1916 -5.4165 46 1 3.0554 2.6141 -5.0545 47 1 3.0224 6.5666 -4.0139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325709990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:03 Heat of formation + Delta-G solvation = 46.941295 kcal Electronic energy + Delta-G solvation = -26685.523091 eV Core-core repulsion = 23217.898950 eV Total energy + Delta-G solvation = -3467.624141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.54248 -40.23721 -39.17993 -35.97622 -34.97492 -33.17383 -32.53547 -32.19721 -31.67015 -30.34805 -27.84842 -27.06594 -25.83152 -23.86601 -23.36431 -23.18291 -22.24243 -21.83057 -19.92400 -19.58314 -18.01742 -17.58516 -17.23500 -16.92654 -16.31834 -16.08991 -16.01794 -15.81757 -15.48057 -15.05886 -14.78969 -14.65611 -14.36547 -14.16825 -13.95446 -13.85548 -13.50302 -13.34629 -13.22442 -13.09413 -13.01911 -12.75911 -12.50586 -12.39480 -12.27959 -11.93725 -11.85960 -11.84068 -11.57117 -11.45977 -11.28800 -11.20863 -10.59855 -10.24594 -9.80897 -9.73440 -9.48590 -8.99369 -8.92360 -6.70100 0.53653 0.58510 0.59936 0.78260 1.21365 1.36480 1.42765 2.06370 2.48513 2.85433 2.95423 3.47919 3.58422 3.68671 3.89913 4.10214 4.12408 4.13653 4.24540 4.29988 4.36185 4.40191 4.41544 4.53246 4.59601 4.65134 4.66811 4.72309 4.74010 4.77171 4.79597 4.86764 4.90838 4.99784 5.02519 5.15758 5.20194 5.21207 5.25906 5.31924 5.37949 5.38724 5.53306 5.66518 5.67106 5.70743 5.74386 5.82948 5.89252 6.13930 6.21874 6.30047 6.52240 6.76225 7.72078 8.10206 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002959 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.197563 B = 9461.088718 C = 9988.761370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.064 3.936 3 H 0.050 0.950 4 C -0.079 4.079 5 H 0.065 0.935 6 C -0.064 4.064 7 C -0.085 4.085 8 C -0.123 4.123 9 C -0.126 4.126 10 C -0.136 4.136 11 C -0.130 4.130 12 C -0.136 4.136 13 C -0.101 4.101 14 C 0.044 3.956 15 N -0.458 5.458 16 C 0.315 3.685 17 C -0.289 4.289 18 C -0.031 4.031 19 C -0.319 4.319 20 C 0.261 3.739 21 C -0.463 4.463 22 H 0.053 0.947 23 C 0.056 3.944 24 N -0.835 5.835 25 Si 0.973 3.027 26 H -0.249 1.249 27 H -0.272 1.272 28 H -0.266 1.266 29 N -0.594 5.594 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.030 0.970 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.110 0.890 47 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -18.511 12.669 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 H 0.068 0.932 4 C -0.099 4.099 5 H 0.084 0.916 6 C -0.101 4.101 7 C -0.085 4.085 8 C -0.140 4.140 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.154 4.154 13 C -0.139 4.139 14 C -0.082 4.082 15 N -0.177 5.177 16 C 0.078 3.922 17 C -0.313 4.313 18 C -0.056 4.056 19 C -0.341 4.341 20 C 0.134 3.866 21 C -0.496 4.496 22 H 0.071 0.929 23 C -0.162 4.162 24 N -0.461 5.461 25 Si 0.796 3.204 26 H -0.173 1.173 27 H -0.198 1.198 28 H -0.191 1.191 29 N -0.314 5.314 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.048 0.952 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.128 0.872 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.761 -18.280 13.214 22.624 hybrid contribution 1.052 1.174 -0.997 1.865 sum 2.813 -17.106 12.217 21.208 Atomic orbital electron populations 1.21671 0.93767 1.01925 1.00371 1.22351 0.96745 0.97022 0.88221 0.93178 1.21945 0.96918 0.96700 0.94307 0.91617 1.20736 0.96356 1.00495 0.92543 1.20022 0.98994 0.94399 0.95069 1.21292 0.99382 0.94458 0.98916 1.21446 0.99154 1.00835 0.92914 1.21431 1.00481 0.94211 0.99238 1.21387 0.99132 0.95926 0.98297 1.21269 1.00690 1.00115 0.93300 1.22565 1.00166 0.98216 0.92920 1.23313 0.88996 0.97889 0.97979 1.62029 1.25963 1.23621 1.06062 1.20260 0.90872 0.88346 0.92696 1.21222 1.15345 1.00417 0.94321 1.21325 0.93522 0.92100 0.98609 1.21862 1.16530 0.97000 0.98694 1.18458 0.87780 0.92592 0.87803 1.19091 1.17274 0.89229 1.24000 0.92859 1.26743 1.02504 0.94051 0.92862 1.69639 1.38632 1.04452 1.33403 0.85389 0.76857 0.78254 0.79864 1.17331 1.19799 1.19067 1.68058 1.28209 1.02168 1.32947 0.90690 0.91086 0.96251 0.90570 0.89671 0.84873 0.84251 0.84451 0.84932 0.86178 0.89758 0.88697 0.87854 0.95185 0.84392 0.83539 0.87235 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 8.34 71.98 0.60 -3.23 16 2 C 0.06 2.22 2.74 45.06 0.12 2.34 16 3 H 0.05 2.19 6.49 -2.39 -0.02 2.17 16 4 C -0.08 -2.03 2.98 -9.91 -0.03 -2.06 16 5 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 6 C -0.06 -1.34 3.55 29.85 0.11 -1.23 16 7 C -0.08 -1.67 4.92 -19.87 -0.10 -1.77 16 8 C -0.12 -2.10 8.98 22.27 0.20 -1.90 16 9 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 10 C -0.14 -2.11 10.05 22.27 0.22 -1.88 16 11 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 12 C -0.14 -2.69 9.70 22.27 0.22 -2.47 16 13 C -0.10 -2.21 5.76 31.80 0.18 -2.03 16 14 C 0.04 1.25 6.04 86.65 0.52 1.77 16 15 N -0.46 -16.30 4.92 -665.65 -3.28 -19.58 16 16 C 0.32 13.87 6.22 133.42 0.83 14.70 16 17 C -0.29 -11.59 9.47 22.73 0.22 -11.37 16 18 C -0.03 -1.28 10.15 22.39 0.23 -1.05 16 19 C -0.32 -15.51 7.19 22.87 0.16 -15.35 16 20 C 0.26 14.28 5.94 40.18 0.24 14.52 16 21 C -0.46 -27.38 9.78 23.46 0.23 -27.15 16 22 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 23 C 0.06 3.04 5.40 85.29 0.46 3.50 16 24 N -0.84 -45.86 13.92 21.84 0.30 -45.56 16 25 Si 0.97 43.22 24.51 68.60 1.68 44.90 16 26 H -0.25 -10.14 6.70 99.48 0.67 -9.48 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -12.43 6.87 99.48 0.68 -11.74 16 29 N -0.59 -30.91 8.07 -186.60 -1.51 -32.42 16 30 H 0.07 2.04 6.80 -2.39 -0.02 2.03 16 31 H 0.07 1.99 6.74 -2.39 -0.02 1.97 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.08 1.62 6.38 -2.39 -0.02 1.60 16 34 H 0.08 1.66 6.87 -2.39 -0.02 1.65 16 35 H 0.13 1.88 7.41 -2.91 -0.02 1.86 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.74 6.97 -2.38 -0.02 1.73 16 42 H 0.10 2.49 8.12 -2.39 -0.02 2.47 16 43 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 44 H 0.14 4.57 8.03 -2.91 -0.02 4.55 16 45 H 0.15 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.11 5.19 4.73 -2.91 -0.01 5.18 16 47 H 0.30 14.52 8.29 -92.71 -0.77 13.76 16 Total: -1.00 -66.52 367.01 2.96 -63.57 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.90 Total: 27.49 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.86 Total: -38.39 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -4.48 Total: -97.56 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.68 Total: 44.90 kcal Total: -66.52 2.96 -63.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.507 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds