Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.06368 * 2 1 4 4 C 1.53988 * 109.91627 * 238.80135 * 2 1 3 5 5 H 1.09002 * 110.31539 * 0.78359 * 4 2 1 6 6 C 1.52999 * 110.31253 * 122.85446 * 4 2 1 7 7 C 1.50700 * 109.47541 * 184.99390 * 6 4 2 8 8 C 1.38233 * 120.00418 * 269.72956 * 7 6 4 9 9 C 1.38230 * 120.00093 * 179.78636 * 8 7 6 10 10 C 1.38234 * 120.00155 * 0.44033 * 9 8 7 11 11 C 1.38239 * 119.99613 * 359.81441 * 10 9 8 12 12 C 1.38226 * 119.99998 * 359.97394 * 11 10 9 13 13 C 1.54602 * 105.13840 * 241.86705 * 4 2 1 14 14 C 1.54941 * 102.92030 * 21.96070 * 13 4 2 15 15 N 1.47894 * 109.91838 * 121.20715 * 2 1 3 16 16 C 1.38824 * 110.99972 * 333.51080 * 15 2 1 17 17 C 1.39798 * 119.58345 * 258.64518 * 16 15 2 18 18 C 1.38593 * 119.48839 * 179.97438 * 17 16 15 19 19 C 1.38389 * 118.68358 * 0.02562 * 18 17 16 20 20 C 1.40547 * 119.14627 * 0.02562 * 19 18 17 21 21 C 1.41319 * 119.78415 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99614 * 6.94052 * 21 20 19 23 23 C 1.40021 * 120.00329 * 186.93693 * 21 20 19 24 24 N 1.30744 * 120.00099 * 352.99445 * 23 21 20 25 25 Si 1.86801 * 120.00264 * 172.99674 * 23 21 20 26 26 H 1.48503 * 109.47272 * 60.00083 * 25 23 21 27 27 H 1.48501 * 109.47247 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47012 * 299.99894 * 25 23 21 29 29 N 1.31953 * 119.58421 * 78.38045 * 16 15 2 30 30 H 1.08994 * 109.47404 * 299.20336 * 1 2 3 31 31 H 1.09005 * 109.47296 * 59.20583 * 1 2 3 32 32 H 1.09006 * 109.47040 * 179.20056 * 1 2 3 33 33 H 1.08999 * 109.47076 * 305.00061 * 6 4 2 34 34 H 1.09003 * 109.46844 * 64.99613 * 6 4 2 35 35 H 1.08006 * 119.99739 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.99789 * 180.27381 * 9 8 7 37 37 H 1.08003 * 120.00229 * 179.83277 * 10 9 8 38 38 H 1.07998 * 119.99408 * 180.02562 * 11 10 9 39 39 H 1.08008 * 119.99686 * 180.02562 * 12 11 10 40 40 H 1.09004 * 110.72518 * 140.31407 * 13 4 2 41 41 H 1.08994 * 110.72718 * 263.42409 * 13 4 2 42 42 H 1.08995 * 110.66654 * 204.15700 * 14 13 4 43 43 H 1.08996 * 110.67018 * 81.01744 * 14 13 4 44 44 H 1.07998 * 120.25904 * 359.97438 * 17 16 15 45 45 H 1.08007 * 120.66012 * 180.02562 * 18 17 16 46 46 H 1.07999 * 120.42448 * 179.97438 * 19 18 17 47 47 H 0.97002 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0545 -0.7500 -1.2384 5 1 1.2225 -1.1027 -1.8478 6 6 2.9673 0.1597 -2.0631 7 6 3.3709 -0.5490 -3.3303 8 6 4.5158 -1.3233 -3.3547 9 6 4.8836 -1.9769 -4.5158 10 6 4.1115 -1.8490 -5.6552 11 6 2.9694 -1.0704 -5.6323 12 6 2.5993 -0.4204 -4.4700 13 6 2.8537 -1.9482 -0.6763 14 6 2.2661 -2.1193 0.7471 15 7 2.0338 -0.7205 1.1893 16 6 1.1127 -0.6731 2.2268 17 6 1.3030 0.2286 3.2780 18 6 0.3819 0.2746 4.3126 19 6 -0.7053 -0.5807 4.2724 20 6 -0.8405 -1.4656 3.1889 21 6 -1.9452 -2.3452 3.1345 22 1 -2.7392 -2.2605 3.8618 23 6 -2.0106 -3.3265 2.1378 24 7 -1.1232 -3.3432 1.1777 25 14 -3.3655 -4.6117 2.1797 26 1 -4.6878 -3.9396 2.1086 27 1 -3.2132 -5.5295 1.0222 28 1 -3.2722 -5.3883 3.4421 29 7 0.0659 -1.4762 2.2058 30 1 -0.3634 0.5014 0.8970 31 1 -0.3634 0.5261 -0.8828 32 1 -0.3633 -1.0276 -0.0143 33 1 2.4353 1.0775 -2.3137 34 1 3.8578 0.4028 -1.4834 35 1 5.1213 -1.4199 -2.4655 36 1 5.7757 -2.5854 -4.5335 37 1 4.4003 -2.3575 -6.5632 38 1 2.3659 -0.9709 -6.5224 39 1 1.7067 0.1876 -4.4520 40 1 2.6804 -2.8423 -1.2752 41 1 3.9176 -1.7155 -0.6320 42 1 2.9823 -2.6158 1.4018 43 1 1.3276 -2.6725 0.7120 44 1 2.1610 0.8844 3.2839 45 1 0.5100 0.9642 5.1339 46 1 -1.4400 -0.5689 5.0640 47 1 -1.1682 -4.0232 0.4874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325709991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = 68.314061 kcal Electronic energy + Delta-G solvation = -27257.895266 eV Core-core repulsion = 23791.197918 eV Total energy + Delta-G solvation = -3466.697348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.93248 -39.05336 -37.29772 -34.07389 -33.33623 -31.04966 -30.87035 -30.38098 -30.32732 -28.44521 -26.85977 -25.37306 -23.82413 -22.63539 -21.88392 -21.29371 -21.09763 -19.83674 -19.05931 -17.37536 -16.74137 -16.01470 -15.47943 -15.10206 -14.88206 -14.72286 -14.45204 -14.09437 -13.86310 -13.47128 -13.37620 -13.01908 -12.78295 -12.65576 -12.57598 -12.29469 -11.69899 -11.64874 -11.62641 -11.25281 -11.17446 -11.05304 -11.00226 -10.94596 -10.74298 -10.65421 -10.51130 -10.31495 -10.08789 -10.03633 -9.89877 -9.31261 -8.92051 -8.62835 -8.25064 -7.98985 -7.54760 -7.24027 -6.44906 -4.52519 1.37164 1.40024 2.69744 2.97096 3.06014 3.08140 3.21003 3.78925 3.92421 4.65434 4.75264 4.80936 4.84612 4.97588 5.09576 5.17229 5.23895 5.37012 5.49447 5.53239 5.74768 5.80686 5.85794 5.95203 5.97583 6.04920 6.09125 6.12434 6.16124 6.27082 6.30727 6.38303 6.46328 6.49527 6.50758 6.58125 6.64451 6.71007 6.74641 6.78365 6.84718 7.01979 7.05836 7.11552 7.20534 7.38405 7.57197 7.64699 7.76574 7.85702 8.13309 8.43782 8.68489 8.99371 10.03443 10.27451 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003700 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.489738 B = 7566.047681 C = 8824.323544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.084 3.916 3 H 0.072 0.928 4 C -0.082 4.082 5 H 0.075 0.925 6 C -0.073 4.073 7 C -0.068 4.068 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.119 4.119 13 C -0.113 4.113 14 C 0.032 3.968 15 N -0.466 5.466 16 C 0.305 3.695 17 C -0.286 4.286 18 C -0.058 4.058 19 C -0.281 4.281 20 C 0.267 3.733 21 C -0.435 4.435 22 H 0.081 0.919 23 C 0.076 3.924 24 N -0.722 5.722 25 Si 0.904 3.096 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.266 1.266 29 N -0.496 5.496 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 2.317 -11.103 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.101 4.101 5 H 0.094 0.906 6 C -0.110 4.110 7 C -0.068 4.068 8 C -0.133 4.133 9 C -0.139 4.139 10 C -0.150 4.150 11 C -0.139 4.139 12 C -0.137 4.137 13 C -0.151 4.151 14 C -0.095 4.095 15 N -0.189 5.189 16 C 0.069 3.931 17 C -0.310 4.310 18 C -0.083 4.083 19 C -0.304 4.304 20 C 0.140 3.860 21 C -0.467 4.467 22 H 0.099 0.901 23 C -0.149 4.149 24 N -0.343 5.343 25 Si 0.729 3.271 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.191 1.191 29 N -0.212 5.212 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.053 1.858 -11.782 14.391 hybrid contribution -1.208 -0.320 0.513 1.351 sum 6.845 1.537 -11.269 13.274 Atomic orbital electron populations 1.22524 0.95139 1.05167 0.99890 1.22300 0.94459 0.97186 0.88391 0.90946 1.22016 0.97377 0.95255 0.95412 0.90630 1.20743 1.00077 0.97482 0.92746 1.19980 0.94512 0.97151 0.95195 1.21109 0.96892 0.97281 0.97981 1.21126 0.99772 0.99716 0.93241 1.21085 0.95815 0.99799 0.98295 1.21109 0.97054 0.97664 0.98028 1.21083 0.99643 1.00291 0.92714 1.22526 0.98949 0.97185 0.96460 1.23319 1.02206 0.90498 0.93483 1.62936 1.38581 1.12200 1.05160 1.19859 0.89756 0.92483 0.90983 1.20841 1.03548 1.07793 0.98849 1.20787 0.94168 0.96854 0.96469 1.21720 1.01461 1.04646 1.02577 1.18338 0.91263 0.89839 0.86576 1.19504 1.04386 1.11652 1.11165 0.90129 1.25962 0.96299 0.98187 0.94420 1.70020 1.29104 1.28069 1.07147 0.86444 0.81580 0.80425 0.78682 1.19088 1.20325 1.19052 1.68782 1.02250 1.23801 1.26414 0.92838 0.94713 0.88385 0.91164 0.90627 0.86043 0.86387 0.86557 0.86430 0.86212 0.91908 0.91842 0.91995 0.88053 0.88482 0.88576 0.88505 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 7.58 37.16 0.28 -3.17 16 2 C 0.08 1.54 3.40 -66.65 -0.23 1.31 16 3 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 4 C -0.08 -1.26 2.62 -89.26 -0.23 -1.49 16 5 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 6 C -0.07 -0.93 4.52 -27.88 -0.13 -1.05 16 7 C -0.07 -0.84 4.92 -104.62 -0.52 -1.35 16 8 C -0.11 -1.33 8.99 -39.59 -0.36 -1.69 16 9 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 10 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 11 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 12 C -0.12 -1.40 9.70 -39.59 -0.38 -1.78 16 13 C -0.11 -1.79 5.77 -24.86 -0.14 -1.93 16 14 C 0.03 0.64 6.39 -1.89 -0.01 0.62 16 15 N -0.47 -9.62 5.24 -161.76 -0.85 -10.46 16 16 C 0.30 7.21 4.07 -155.32 -0.63 6.57 16 17 C -0.29 -6.58 10.04 -38.87 -0.39 -6.97 16 18 C -0.06 -1.31 10.15 -39.39 -0.40 -1.71 16 19 C -0.28 -6.86 9.83 -38.66 -0.38 -7.24 16 20 C 0.27 7.05 6.54 -85.00 -0.56 6.49 16 21 C -0.44 -11.28 9.13 -37.74 -0.34 -11.63 16 22 H 0.08 1.99 7.86 -52.49 -0.41 1.57 16 23 C 0.08 1.85 5.49 -17.35 -0.10 1.75 16 24 N -0.72 -17.86 10.64 55.55 0.59 -17.27 16 25 Si 0.90 18.24 29.57 -169.99 -5.03 13.21 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 28 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 29 N -0.50 -12.66 4.14 -10.33 -0.04 -12.70 16 30 H 0.05 1.23 6.78 -51.93 -0.35 0.88 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 2.28 7.02 -51.93 -0.36 1.92 16 33 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.08 0.95 7.94 -51.93 -0.41 0.53 16 35 H 0.12 1.30 7.41 -52.48 -0.39 0.92 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.92 6.99 -51.93 -0.36 0.55 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.10 2.31 6.30 -51.93 -0.33 1.99 16 44 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 45 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 47 H 0.27 6.21 8.29 -40.82 -0.34 5.87 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -27.06 373.05 -12.61 -39.67 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.20 Total: 10.30 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -5.71 Total: -28.38 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.30 Total: -40.43 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.06 -12.61 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.986 kcal (2) G-P(sol) polarization free energy of solvation -27.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds