Wall clock time and date at job start Tue Mar 31 2020 14:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.06368 * 2 1 4 4 C 1.53988 * 109.91627 * 238.80135 * 2 1 3 5 5 H 1.09002 * 110.31539 * 0.78359 * 4 2 1 6 6 C 1.52999 * 110.31253 * 122.85446 * 4 2 1 7 7 C 1.50700 * 109.47541 * 184.99390 * 6 4 2 8 8 C 1.38233 * 120.00418 * 269.72956 * 7 6 4 9 9 C 1.38230 * 120.00093 * 179.78636 * 8 7 6 10 10 C 1.38234 * 120.00155 * 0.44033 * 9 8 7 11 11 C 1.38239 * 119.99613 * 359.81441 * 10 9 8 12 12 C 1.38226 * 119.99998 * 359.97394 * 11 10 9 13 13 C 1.54602 * 105.13840 * 241.86705 * 4 2 1 14 14 C 1.54941 * 102.92030 * 21.96070 * 13 4 2 15 15 N 1.47894 * 109.91838 * 121.20715 * 2 1 3 16 16 C 1.38824 * 110.99972 * 333.51080 * 15 2 1 17 17 C 1.39798 * 119.58345 * 258.64518 * 16 15 2 18 18 C 1.38593 * 119.48839 * 179.97438 * 17 16 15 19 19 C 1.38389 * 118.68358 * 0.02562 * 18 17 16 20 20 C 1.40547 * 119.14627 * 0.02562 * 19 18 17 21 21 C 1.41319 * 119.78415 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99614 * 6.94052 * 21 20 19 23 23 C 1.40021 * 120.00329 * 186.93693 * 21 20 19 24 24 N 1.30744 * 120.00099 * 352.99445 * 23 21 20 25 25 Si 1.86801 * 120.00264 * 172.99674 * 23 21 20 26 26 H 1.48503 * 109.47272 * 60.00083 * 25 23 21 27 27 H 1.48501 * 109.47247 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47012 * 299.99894 * 25 23 21 29 29 N 1.31953 * 119.58421 * 78.38045 * 16 15 2 30 30 H 1.08994 * 109.47404 * 299.20336 * 1 2 3 31 31 H 1.09005 * 109.47296 * 59.20583 * 1 2 3 32 32 H 1.09006 * 109.47040 * 179.20056 * 1 2 3 33 33 H 1.08999 * 109.47076 * 305.00061 * 6 4 2 34 34 H 1.09003 * 109.46844 * 64.99613 * 6 4 2 35 35 H 1.08006 * 119.99739 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.99789 * 180.27381 * 9 8 7 37 37 H 1.08003 * 120.00229 * 179.83277 * 10 9 8 38 38 H 1.07998 * 119.99408 * 180.02562 * 11 10 9 39 39 H 1.08008 * 119.99686 * 180.02562 * 12 11 10 40 40 H 1.09004 * 110.72518 * 140.31407 * 13 4 2 41 41 H 1.08994 * 110.72718 * 263.42409 * 13 4 2 42 42 H 1.08995 * 110.66654 * 204.15700 * 14 13 4 43 43 H 1.08996 * 110.67018 * 81.01744 * 14 13 4 44 44 H 1.07998 * 120.25904 * 359.97438 * 17 16 15 45 45 H 1.08007 * 120.66012 * 180.02562 * 18 17 16 46 46 H 1.07999 * 120.42448 * 179.97438 * 19 18 17 47 47 H 0.97002 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0545 -0.7500 -1.2384 5 1 1.2225 -1.1027 -1.8478 6 6 2.9673 0.1597 -2.0631 7 6 3.3709 -0.5490 -3.3303 8 6 4.5158 -1.3233 -3.3547 9 6 4.8836 -1.9769 -4.5158 10 6 4.1115 -1.8490 -5.6552 11 6 2.9694 -1.0704 -5.6323 12 6 2.5993 -0.4204 -4.4700 13 6 2.8537 -1.9482 -0.6763 14 6 2.2661 -2.1193 0.7471 15 7 2.0338 -0.7205 1.1893 16 6 1.1127 -0.6731 2.2268 17 6 1.3030 0.2286 3.2780 18 6 0.3819 0.2746 4.3126 19 6 -0.7053 -0.5807 4.2724 20 6 -0.8405 -1.4656 3.1889 21 6 -1.9452 -2.3452 3.1345 22 1 -2.7392 -2.2605 3.8618 23 6 -2.0106 -3.3265 2.1378 24 7 -1.1232 -3.3432 1.1777 25 14 -3.3655 -4.6117 2.1797 26 1 -4.6878 -3.9396 2.1086 27 1 -3.2132 -5.5295 1.0222 28 1 -3.2722 -5.3883 3.4421 29 7 0.0659 -1.4762 2.2058 30 1 -0.3634 0.5014 0.8970 31 1 -0.3634 0.5261 -0.8828 32 1 -0.3633 -1.0276 -0.0143 33 1 2.4353 1.0775 -2.3137 34 1 3.8578 0.4028 -1.4834 35 1 5.1213 -1.4199 -2.4655 36 1 5.7757 -2.5854 -4.5335 37 1 4.4003 -2.3575 -6.5632 38 1 2.3659 -0.9709 -6.5224 39 1 1.7067 0.1876 -4.4520 40 1 2.6804 -2.8423 -1.2752 41 1 3.9176 -1.7155 -0.6320 42 1 2.9823 -2.6158 1.4018 43 1 1.3276 -2.6725 0.7120 44 1 2.1610 0.8844 3.2839 45 1 0.5100 0.9642 5.1339 46 1 -1.4400 -0.5689 5.0640 47 1 -1.1682 -4.0232 0.4874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325709991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:07 Heat of formation + Delta-G solvation = 57.897662 kcal Electronic energy + Delta-G solvation = -27258.346955 eV Core-core repulsion = 23791.197918 eV Total energy + Delta-G solvation = -3467.149037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.41812 -40.11979 -38.88999 -35.65880 -34.83614 -32.41928 -32.14433 -31.98491 -31.64400 -29.99636 -28.26738 -27.15252 -25.15786 -23.72073 -23.34706 -23.00574 -22.21002 -21.14978 -20.64972 -19.23671 -17.72920 -17.53987 -16.71862 -16.58591 -16.32854 -15.97324 -15.93392 -15.71598 -15.28635 -14.95326 -14.33105 -14.21837 -14.19966 -14.00666 -13.92492 -13.59462 -13.35739 -13.23229 -12.90157 -12.82143 -12.75021 -12.62714 -12.47659 -12.44030 -12.24228 -11.95336 -11.87638 -11.80173 -11.54242 -11.44653 -11.26493 -11.12509 -10.05740 -9.80037 -9.73433 -9.49898 -9.41266 -9.03192 -8.27733 -6.46492 0.53707 0.58574 0.86676 1.17634 1.39919 1.49425 1.53661 2.22349 2.82804 2.95608 3.16577 3.61823 3.80021 3.90430 4.00021 4.11680 4.15332 4.24980 4.34124 4.37211 4.43358 4.53150 4.56120 4.63617 4.65536 4.72746 4.75422 4.79581 4.84072 4.91378 4.94497 4.99174 5.03675 5.12776 5.18902 5.23381 5.25499 5.27309 5.29611 5.36058 5.56252 5.64812 5.66375 5.70228 5.76919 5.83871 5.90395 6.03156 6.05533 6.21792 6.23538 6.59254 6.80087 7.11109 8.16098 8.44742 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003700 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.489738 B = 7566.047681 C = 8824.323544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.085 3.915 3 H 0.087 0.913 4 C -0.069 4.069 5 H 0.065 0.935 6 C -0.063 4.063 7 C -0.083 4.083 8 C -0.126 4.126 9 C -0.128 4.128 10 C -0.135 4.135 11 C -0.129 4.129 12 C -0.133 4.133 13 C -0.098 4.098 14 C 0.029 3.971 15 N -0.465 5.465 16 C 0.294 3.706 17 C -0.295 4.295 18 C -0.054 4.054 19 C -0.305 4.305 20 C 0.233 3.767 21 C -0.470 4.470 22 H 0.081 0.919 23 C 0.035 3.965 24 N -0.743 5.743 25 Si 0.977 3.023 26 H -0.262 1.262 27 H -0.269 1.269 28 H -0.264 1.264 29 N -0.508 5.508 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.105 0.895 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 2.311 -12.691 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 H 0.105 0.895 4 C -0.088 4.088 5 H 0.083 0.917 6 C -0.100 4.100 7 C -0.083 4.083 8 C -0.144 4.144 9 C -0.145 4.145 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.136 4.136 14 C -0.098 4.098 15 N -0.187 5.187 16 C 0.058 3.942 17 C -0.319 4.319 18 C -0.079 4.079 19 C -0.328 4.328 20 C 0.107 3.893 21 C -0.501 4.501 22 H 0.100 0.900 23 C -0.187 4.187 24 N -0.364 5.364 25 Si 0.799 3.201 26 H -0.187 1.187 27 H -0.194 1.194 28 H -0.189 1.189 29 N -0.225 5.225 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.149 0.851 46 H 0.123 0.877 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.143 1.869 -13.369 16.304 hybrid contribution -1.483 -0.270 0.978 1.797 sum 7.660 1.599 -12.391 14.655 Atomic orbital electron populations 1.22332 0.96892 1.02910 0.99189 1.22412 0.92894 0.98111 0.88829 0.89513 1.21871 0.97494 0.95204 0.94206 0.91681 1.20618 0.99592 0.97099 0.92692 1.19963 0.95283 0.98007 0.95072 1.21284 0.96893 0.97398 0.98779 1.21430 1.00500 0.99611 0.92998 1.21433 0.95413 0.99358 0.99128 1.21402 0.97491 0.97364 0.98394 1.21277 0.99958 1.00789 0.93115 1.22438 0.99825 0.97637 0.93654 1.23261 1.00788 0.89775 0.95973 1.62999 1.37535 1.12722 1.05493 1.20282 0.89707 0.92208 0.92036 1.21168 1.04167 1.07843 0.98765 1.21143 0.93043 0.96537 0.97167 1.21899 1.02760 1.05391 1.02725 1.18806 0.92081 0.90813 0.87642 1.19805 1.04878 1.13054 1.12376 0.90049 1.26741 0.98598 0.99716 0.93664 1.70121 1.30289 1.28600 1.07411 0.85335 0.78440 0.77594 0.78762 1.18674 1.19376 1.18895 1.68805 1.02695 1.24580 1.26389 0.96206 0.92435 0.91465 0.90311 0.90051 0.85397 0.84438 0.84336 0.84626 0.85740 0.91418 0.89812 0.92526 0.91315 0.86714 0.85125 0.87687 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.45 7.58 71.98 0.55 -5.91 16 2 C 0.08 3.05 3.40 45.06 0.15 3.20 16 3 H 0.09 2.90 7.68 -2.39 -0.02 2.88 16 4 C -0.07 -2.04 2.62 -9.91 -0.03 -2.06 16 5 H 0.06 2.09 7.68 -2.39 -0.02 2.07 16 6 C -0.06 -1.46 4.52 29.85 0.13 -1.33 16 7 C -0.08 -1.88 4.92 -19.87 -0.10 -1.98 16 8 C -0.13 -2.64 8.99 22.27 0.20 -2.44 16 9 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 10 C -0.14 -2.43 10.05 22.27 0.22 -2.20 16 11 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 12 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 13 C -0.10 -2.98 5.77 31.80 0.18 -2.79 16 14 C 0.03 1.18 6.39 86.65 0.55 1.73 16 15 N -0.47 -19.21 5.24 -665.68 -3.49 -22.70 16 16 C 0.29 14.14 4.07 133.42 0.54 14.68 16 17 C -0.30 -13.55 10.04 22.73 0.23 -13.32 16 18 C -0.05 -2.44 10.15 22.39 0.23 -2.21 16 19 C -0.31 -15.24 9.83 22.87 0.22 -15.01 16 20 C 0.23 12.82 6.54 40.18 0.26 13.08 16 21 C -0.47 -25.27 9.13 23.46 0.21 -25.06 16 22 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 23 C 0.04 1.76 5.49 85.29 0.47 2.22 16 24 N -0.74 -37.98 10.64 21.84 0.23 -37.75 16 25 Si 0.98 38.00 29.57 68.60 2.03 40.02 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 28 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 29 N -0.51 -26.91 4.14 -186.59 -0.77 -27.68 16 30 H 0.02 0.92 6.78 -2.39 -0.02 0.90 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 3.25 7.02 -2.38 -0.02 3.23 16 33 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 34 H 0.08 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.13 2.43 7.41 -2.91 -0.02 2.41 16 36 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.08 2.23 6.99 -2.39 -0.02 2.21 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 3.25 6.30 -2.39 -0.02 3.24 16 44 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 45 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 46 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 47 H 0.28 12.97 8.29 -92.71 -0.77 12.20 16 Total: -1.00 -60.55 373.05 3.64 -56.90 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.95 Total: 37.65 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 4.70 Total: -46.46 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -4.03 Total: -88.12 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Total: -60.55 3.64 -56.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.801 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds