Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.36870 * 2 1 4 4 C 1.54380 * 110.41036 * 122.35272 * 2 1 3 5 5 H 1.09001 * 110.41052 * 23.81107 * 4 2 1 6 6 C 1.52997 * 110.32281 * 261.64410 * 4 2 1 7 7 C 1.50702 * 109.46966 * 177.90780 * 6 4 2 8 8 C 1.38223 * 120.00349 * 269.72605 * 7 6 4 9 9 C 1.38241 * 120.00470 * 179.78938 * 8 7 6 10 10 C 1.38234 * 119.99549 * 0.46168 * 9 8 7 11 11 C 1.38237 * 120.00059 * 359.77471 * 10 9 8 12 12 C 1.38237 * 119.99580 * 90.00136 * 7 6 4 13 13 C 1.54269 * 105.05993 * 142.74783 * 4 2 1 14 14 C 1.54379 * 105.06007 * 359.97438 * 13 4 2 15 15 N 1.48562 * 104.70001 * 336.09350 * 14 13 4 16 16 C 1.38816 * 110.99814 * 159.09938 * 15 14 13 17 17 C 1.39797 * 119.58954 * 59.59399 * 16 15 14 18 18 C 1.38600 * 119.49179 * 179.76497 * 17 16 15 19 19 C 1.38388 * 118.67881 * 0.50286 * 18 17 16 20 20 C 1.40549 * 119.15048 * 359.74472 * 19 18 17 21 21 C 1.41319 * 119.78032 * 180.02562 * 20 19 18 22 22 H 1.07990 * 120.00665 * 355.51467 * 21 20 19 23 23 C 1.40028 * 119.99463 * 175.51631 * 21 20 19 24 24 N 1.30747 * 120.00256 * 7.12002 * 23 21 20 25 25 Si 1.86803 * 119.99755 * 187.12928 * 23 21 20 26 26 H 1.48504 * 109.47016 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47518 * 119.99730 * 25 23 21 28 28 H 1.48507 * 109.46633 * 239.99910 * 25 23 21 29 29 N 1.31963 * 119.58500 * 239.86870 * 16 15 14 30 30 H 1.08997 * 109.46732 * 297.64823 * 1 2 3 31 31 H 1.09002 * 109.46916 * 57.65092 * 1 2 3 32 32 H 1.09002 * 109.47393 * 177.64810 * 1 2 3 33 33 H 1.09001 * 109.46940 * 297.90774 * 6 4 2 34 34 H 1.08999 * 109.47201 * 57.90897 * 6 4 2 35 35 H 1.08003 * 119.99669 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.00371 * 180.25539 * 9 8 7 37 37 H 1.07999 * 120.00225 * 179.78784 * 10 9 8 38 38 H 1.08005 * 119.99944 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.00425 * 359.97438 * 12 7 6 40 40 H 1.09005 * 110.31842 * 241.10518 * 13 4 2 41 41 H 1.08994 * 110.40497 * 118.93969 * 13 4 2 42 42 H 1.09006 * 110.40318 * 94.92598 * 14 13 4 43 43 H 1.08994 * 110.41009 * 217.24903 * 14 13 4 44 44 H 1.08000 * 120.25348 * 0.02562 * 17 16 15 45 45 H 1.08002 * 120.65821 * 180.24760 * 18 17 16 46 46 H 1.08001 * 120.42175 * 179.72379 * 19 18 17 47 47 H 0.97003 * 119.99557 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7743 1.2223 5 1 1.3250 -1.4878 1.5779 6 6 2.4491 0.1973 2.3412 7 6 2.9232 -0.5803 3.5419 8 6 2.0201 -0.9724 4.5121 9 6 2.4542 -1.6894 5.6113 10 6 3.7932 -2.0061 5.7451 11 6 4.6972 -1.6097 4.7773 12 6 4.2622 -0.8965 3.6758 13 6 3.3195 -1.5158 0.7077 14 6 3.4314 -1.1277 -0.7823 15 7 2.0507 -0.7476 -1.1775 16 6 2.0603 0.0511 -2.3129 17 6 2.6161 -0.4402 -3.4978 18 6 2.6203 0.3571 -4.6315 19 6 2.0792 1.6283 -4.5513 20 6 1.5400 2.0671 -3.3298 21 6 0.9836 3.3626 -3.2332 22 1 1.0384 4.0380 -4.0740 23 6 0.3613 3.7704 -2.0470 24 7 0.4158 3.0097 -0.9850 25 14 -0.5471 5.4014 -1.9819 26 1 -0.4619 6.0687 -3.3058 27 1 -1.9718 5.1612 -1.6390 28 1 0.0708 6.2712 -0.9489 29 7 1.5496 1.2667 -2.2587 30 1 -0.3633 0.4769 0.9103 31 1 -0.3633 0.5499 -0.8682 32 1 -0.3634 -1.0268 -0.0422 33 1 3.2471 0.8546 1.9957 34 1 1.5795 0.7945 2.6153 35 1 0.9747 -0.7211 4.4098 36 1 1.7480 -1.9994 6.3673 37 1 4.1330 -2.5633 6.6055 38 1 5.7432 -1.8575 4.8816 39 1 4.9686 -0.5866 2.9198 40 1 3.1894 -2.5933 0.8092 41 1 4.2055 -1.1891 1.2520 42 1 4.1083 -0.2821 -0.9049 43 1 3.7752 -1.9776 -1.3717 44 1 3.0353 -1.4350 -3.5306 45 1 3.0412 -0.0050 -5.5578 46 1 2.0718 2.2750 -5.4163 47 1 -0.0150 3.2925 -0.1632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325709992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = 62.452172 kcal Electronic energy + Delta-G solvation = -27217.800782 eV Core-core repulsion = 23750.849243 eV Total energy + Delta-G solvation = -3466.951539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.84686 -38.96278 -37.29776 -34.11770 -33.28959 -31.17792 -30.89123 -30.80334 -30.10309 -28.44868 -26.70417 -25.31019 -23.88755 -22.66673 -21.83493 -21.66179 -21.00407 -19.57950 -19.06184 -17.41835 -16.69449 -15.97509 -15.45709 -15.12907 -14.83585 -14.70952 -14.44608 -14.32050 -13.59331 -13.49496 -13.40132 -13.13157 -12.91321 -12.70073 -12.48684 -12.22428 -12.02528 -11.68842 -11.49088 -11.27169 -11.14596 -11.07072 -11.01934 -10.91274 -10.74332 -10.64537 -10.53094 -10.34965 -10.09690 -9.98627 -9.71327 -9.37062 -8.92492 -8.66359 -8.62594 -8.02630 -7.56666 -6.97982 -6.43646 -4.51242 1.37147 1.38931 2.72709 3.01040 3.08566 3.12069 3.21048 3.78518 3.93758 4.56868 4.75849 4.81843 4.85954 4.96910 5.09117 5.10012 5.25076 5.36655 5.45521 5.52027 5.72375 5.77498 5.84432 5.93471 5.97091 6.02696 6.10925 6.13685 6.18152 6.22403 6.29474 6.40914 6.43825 6.47096 6.48914 6.53318 6.59456 6.64229 6.74508 6.78777 6.81780 6.97251 7.01362 7.13954 7.24841 7.36275 7.48660 7.68800 7.79521 7.87061 8.18612 8.39551 8.70698 8.99724 10.07973 10.29054 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003813 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.076468 B = 7341.507597 C = 8780.098597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.089 3.911 3 H 0.094 0.906 4 C -0.087 4.087 5 H 0.073 0.927 6 C -0.074 4.074 7 C -0.066 4.066 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.049 3.951 15 N -0.458 5.458 16 C 0.314 3.686 17 C -0.318 4.318 18 C -0.047 4.047 19 C -0.295 4.295 20 C 0.273 3.727 21 C -0.432 4.432 22 H 0.082 0.918 23 C 0.074 3.926 24 N -0.712 5.712 25 Si 0.903 3.097 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.275 1.275 29 N -0.502 5.502 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -6.482 11.609 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.019 4.019 3 H 0.112 0.888 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.112 4.112 7 C -0.066 4.066 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.151 4.151 11 C -0.138 4.138 12 C -0.136 4.136 13 C -0.158 4.158 14 C -0.078 4.078 15 N -0.178 5.178 16 C 0.075 3.925 17 C -0.343 4.343 18 C -0.071 4.071 19 C -0.318 4.318 20 C 0.147 3.853 21 C -0.463 4.463 22 H 0.100 0.900 23 C -0.151 4.151 24 N -0.333 5.333 25 Si 0.727 3.273 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.200 1.200 29 N -0.220 5.220 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.528 -6.642 12.481 14.572 hybrid contribution 0.377 0.889 -0.711 1.199 sum 3.905 -5.753 11.770 13.670 Atomic orbital electron populations 1.21501 0.94139 0.99500 1.02391 1.22513 0.96321 0.97309 0.85720 0.88837 1.22032 0.97044 0.96761 0.94790 0.90856 1.20708 1.01689 0.96769 0.92008 1.20021 0.93374 0.97471 0.95743 1.21095 0.99582 0.98811 0.94173 1.21115 0.95827 0.98861 0.98022 1.21075 0.93622 1.01110 0.99284 1.21121 0.99412 0.98719 0.94577 1.21129 0.95490 0.99152 0.97821 1.22446 0.98036 1.00250 0.95053 1.22951 0.89726 0.99977 0.95187 1.62580 1.16353 1.35962 1.02867 1.19981 0.92890 0.89613 0.89988 1.20711 1.17855 1.01236 0.94533 1.20708 0.96275 0.94011 0.96124 1.21640 1.13200 0.97575 0.99383 1.18348 0.88283 0.92477 0.86200 1.19580 1.30429 0.97513 0.98818 0.89994 1.25996 0.95681 0.98167 0.95299 1.70115 1.29330 1.33604 1.00265 0.86351 0.79556 0.82007 0.79373 1.18567 1.19873 1.20001 1.68647 1.22411 1.01295 1.29635 0.94012 0.89969 0.94877 0.90917 0.90597 0.86108 0.86422 0.86570 0.86409 0.86086 0.91666 0.91363 0.93773 0.90712 0.88892 0.88718 0.88588 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.06 37.16 0.34 -1.99 16 2 C 0.09 1.72 1.98 -65.89 -0.13 1.59 16 3 H 0.09 2.11 6.66 -51.93 -0.35 1.76 16 4 C -0.09 -1.34 2.63 -89.23 -0.23 -1.58 16 5 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 6 C -0.07 -1.03 4.61 -27.88 -0.13 -1.16 16 7 C -0.07 -0.83 4.89 -104.63 -0.51 -1.34 16 8 C -0.12 -1.39 9.70 -39.59 -0.38 -1.78 16 9 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 10 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 11 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 12 C -0.12 -1.38 8.57 -39.58 -0.34 -1.72 16 13 C -0.12 -1.75 6.21 -25.34 -0.16 -1.91 16 14 C 0.05 0.85 5.87 -2.18 -0.01 0.84 16 15 N -0.46 -9.52 5.11 -161.09 -0.82 -10.35 16 16 C 0.31 7.54 6.12 -155.32 -0.95 6.59 16 17 C -0.32 -7.37 9.41 -38.87 -0.37 -7.74 16 18 C -0.05 -1.07 10.15 -39.39 -0.40 -1.47 16 19 C -0.30 -7.30 9.83 -38.66 -0.38 -7.68 16 20 C 0.27 7.32 6.55 -85.00 -0.56 6.76 16 21 C -0.43 -11.23 9.13 -37.74 -0.34 -11.58 16 22 H 0.08 2.04 7.86 -52.49 -0.41 1.62 16 23 C 0.07 1.79 5.49 -17.34 -0.10 1.69 16 24 N -0.71 -17.36 10.29 55.55 0.57 -16.79 16 25 Si 0.90 18.11 29.57 -169.99 -5.03 13.08 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 29 N -0.50 -13.09 5.04 -10.33 -0.05 -13.15 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.93 6.52 -51.93 -0.34 1.59 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 1.32 6.93 -52.48 -0.36 0.96 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.89 5.40 -51.93 -0.28 0.61 16 42 H 0.04 0.82 7.97 -51.93 -0.41 0.41 16 43 H 0.07 1.23 7.97 -51.93 -0.41 0.81 16 44 H 0.09 1.97 7.83 -52.49 -0.41 1.56 16 45 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 46 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 47 H 0.27 6.02 8.29 -40.82 -0.34 5.68 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -27.59 373.90 -12.71 -40.30 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.17 Total: 8.79 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -5.85 Total: -27.53 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.30 Total: -40.28 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.59 -12.71 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.751 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds