Wall clock time and date at job start Tue Mar 31 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.36870 * 2 1 4 4 C 1.54380 * 110.41036 * 122.35272 * 2 1 3 5 5 H 1.09001 * 110.41052 * 23.81107 * 4 2 1 6 6 C 1.52997 * 110.32281 * 261.64410 * 4 2 1 7 7 C 1.50702 * 109.46966 * 177.90780 * 6 4 2 8 8 C 1.38223 * 120.00349 * 269.72605 * 7 6 4 9 9 C 1.38241 * 120.00470 * 179.78938 * 8 7 6 10 10 C 1.38234 * 119.99549 * 0.46168 * 9 8 7 11 11 C 1.38237 * 120.00059 * 359.77471 * 10 9 8 12 12 C 1.38237 * 119.99580 * 90.00136 * 7 6 4 13 13 C 1.54269 * 105.05993 * 142.74783 * 4 2 1 14 14 C 1.54379 * 105.06007 * 359.97438 * 13 4 2 15 15 N 1.48562 * 104.70001 * 336.09350 * 14 13 4 16 16 C 1.38816 * 110.99814 * 159.09938 * 15 14 13 17 17 C 1.39797 * 119.58954 * 59.59399 * 16 15 14 18 18 C 1.38600 * 119.49179 * 179.76497 * 17 16 15 19 19 C 1.38388 * 118.67881 * 0.50286 * 18 17 16 20 20 C 1.40549 * 119.15048 * 359.74472 * 19 18 17 21 21 C 1.41319 * 119.78032 * 180.02562 * 20 19 18 22 22 H 1.07990 * 120.00665 * 355.51467 * 21 20 19 23 23 C 1.40028 * 119.99463 * 175.51631 * 21 20 19 24 24 N 1.30747 * 120.00256 * 7.12002 * 23 21 20 25 25 Si 1.86803 * 119.99755 * 187.12928 * 23 21 20 26 26 H 1.48504 * 109.47016 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47518 * 119.99730 * 25 23 21 28 28 H 1.48507 * 109.46633 * 239.99910 * 25 23 21 29 29 N 1.31963 * 119.58500 * 239.86870 * 16 15 14 30 30 H 1.08997 * 109.46732 * 297.64823 * 1 2 3 31 31 H 1.09002 * 109.46916 * 57.65092 * 1 2 3 32 32 H 1.09002 * 109.47393 * 177.64810 * 1 2 3 33 33 H 1.09001 * 109.46940 * 297.90774 * 6 4 2 34 34 H 1.08999 * 109.47201 * 57.90897 * 6 4 2 35 35 H 1.08003 * 119.99669 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.00371 * 180.25539 * 9 8 7 37 37 H 1.07999 * 120.00225 * 179.78784 * 10 9 8 38 38 H 1.08005 * 119.99944 * 180.02562 * 11 10 9 39 39 H 1.08003 * 120.00425 * 359.97438 * 12 7 6 40 40 H 1.09005 * 110.31842 * 241.10518 * 13 4 2 41 41 H 1.08994 * 110.40497 * 118.93969 * 13 4 2 42 42 H 1.09006 * 110.40318 * 94.92598 * 14 13 4 43 43 H 1.08994 * 110.41009 * 217.24903 * 14 13 4 44 44 H 1.08000 * 120.25348 * 0.02562 * 17 16 15 45 45 H 1.08002 * 120.65821 * 180.24760 * 18 17 16 46 46 H 1.08001 * 120.42175 * 179.72379 * 19 18 17 47 47 H 0.97003 * 119.99557 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7743 1.2223 5 1 1.3250 -1.4878 1.5779 6 6 2.4491 0.1973 2.3412 7 6 2.9232 -0.5803 3.5419 8 6 2.0201 -0.9724 4.5121 9 6 2.4542 -1.6894 5.6113 10 6 3.7932 -2.0061 5.7451 11 6 4.6972 -1.6097 4.7773 12 6 4.2622 -0.8965 3.6758 13 6 3.3195 -1.5158 0.7077 14 6 3.4314 -1.1277 -0.7823 15 7 2.0507 -0.7476 -1.1775 16 6 2.0603 0.0511 -2.3129 17 6 2.6161 -0.4402 -3.4978 18 6 2.6203 0.3571 -4.6315 19 6 2.0792 1.6283 -4.5513 20 6 1.5400 2.0671 -3.3298 21 6 0.9836 3.3626 -3.2332 22 1 1.0384 4.0380 -4.0740 23 6 0.3613 3.7704 -2.0470 24 7 0.4158 3.0097 -0.9850 25 14 -0.5471 5.4014 -1.9819 26 1 -0.4619 6.0687 -3.3058 27 1 -1.9718 5.1612 -1.6390 28 1 0.0708 6.2712 -0.9489 29 7 1.5496 1.2667 -2.2587 30 1 -0.3633 0.4769 0.9103 31 1 -0.3633 0.5499 -0.8682 32 1 -0.3634 -1.0268 -0.0422 33 1 3.2471 0.8546 1.9957 34 1 1.5795 0.7945 2.6153 35 1 0.9747 -0.7211 4.4098 36 1 1.7480 -1.9994 6.3673 37 1 4.1330 -2.5633 6.6055 38 1 5.7432 -1.8575 4.8816 39 1 4.9686 -0.5866 2.9198 40 1 3.1894 -2.5933 0.8092 41 1 4.2055 -1.1891 1.2520 42 1 4.1083 -0.2821 -0.9049 43 1 3.7752 -1.9776 -1.3717 44 1 3.0353 -1.4350 -3.5306 45 1 3.0412 -0.0050 -5.5578 46 1 2.0718 2.2750 -5.4163 47 1 -0.0150 3.2925 -0.1632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325709992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:10 Heat of formation + Delta-G solvation = 51.765539 kcal Electronic energy + Delta-G solvation = -27218.264190 eV Core-core repulsion = 23750.849243 eV Total energy + Delta-G solvation = -3467.414946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.25020 -40.12575 -38.87888 -35.71321 -34.80831 -32.69061 -32.26652 -31.91784 -31.63498 -29.99932 -28.06455 -27.12096 -25.22128 -23.66608 -23.43771 -23.14108 -22.19877 -21.10477 -20.53803 -19.21431 -17.74065 -17.45359 -16.67749 -16.51545 -16.31245 -16.15699 -15.90246 -15.70032 -15.16142 -15.01773 -14.48995 -14.40673 -14.24690 -13.92991 -13.82895 -13.65481 -13.39512 -13.03885 -13.00100 -12.78767 -12.77672 -12.58914 -12.54751 -12.29136 -12.24337 -12.08085 -11.89281 -11.76625 -11.53004 -11.35901 -11.22678 -11.08286 -10.41944 -9.89507 -9.74409 -9.52695 -9.42357 -8.78756 -8.26311 -6.45458 0.52629 0.57006 0.90676 1.19991 1.41883 1.52352 1.54926 2.24184 2.81951 2.93437 3.13734 3.64336 3.73615 3.93025 3.98473 4.12956 4.16425 4.22194 4.31030 4.35827 4.43204 4.49855 4.54685 4.62500 4.70850 4.73299 4.80020 4.82376 4.84273 4.86448 4.94135 4.98262 5.05409 5.07657 5.13384 5.21988 5.22982 5.28375 5.32534 5.36046 5.57606 5.65643 5.68095 5.69126 5.71667 5.83260 5.91076 5.97408 6.07758 6.20171 6.30728 6.55104 6.82305 7.09858 8.20046 8.46882 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003813 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.076468 B = 7341.507597 C = 8780.098597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.091 3.909 3 H 0.059 0.941 4 C -0.075 4.075 5 H 0.079 0.921 6 C -0.065 4.065 7 C -0.080 4.080 8 C -0.131 4.131 9 C -0.124 4.124 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.129 4.129 13 C -0.108 4.108 14 C 0.048 3.952 15 N -0.464 5.464 16 C 0.299 3.701 17 C -0.327 4.327 18 C -0.044 4.044 19 C -0.322 4.322 20 C 0.239 3.761 21 C -0.465 4.465 22 H 0.081 0.919 23 C 0.032 3.968 24 N -0.729 5.729 25 Si 0.978 3.022 26 H -0.261 1.261 27 H -0.269 1.269 28 H -0.267 1.267 29 N -0.520 5.520 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.103 0.897 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -7.742 13.538 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.016 4.016 3 H 0.077 0.923 4 C -0.094 4.094 5 H 0.098 0.902 6 C -0.102 4.102 7 C -0.081 4.081 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.151 4.151 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.146 4.146 14 C -0.079 4.079 15 N -0.183 5.183 16 C 0.061 3.939 17 C -0.351 4.351 18 C -0.068 4.068 19 C -0.344 4.344 20 C 0.113 3.887 21 C -0.496 4.496 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.350 5.350 25 Si 0.799 3.201 26 H -0.185 1.185 27 H -0.194 1.194 28 H -0.192 1.192 29 N -0.238 5.238 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.121 0.879 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.128 -7.924 14.410 16.956 hybrid contribution 0.232 1.187 -1.269 1.753 sum 4.360 -6.737 13.141 15.398 Atomic orbital electron populations 1.21362 0.94650 0.99280 1.01189 1.22407 0.95881 0.96136 0.87154 0.92288 1.21904 0.97450 0.96631 0.93428 0.90239 1.20539 1.01034 0.96355 0.92316 1.19884 0.94127 0.98471 0.95574 1.21251 0.99785 0.99292 0.94606 1.21414 0.96682 0.98202 0.97933 1.21446 0.93366 1.00479 0.99801 1.21419 1.00733 0.98016 0.94034 1.21252 0.95163 0.99637 0.98668 1.22416 0.98255 1.01061 0.92830 1.23055 0.87631 0.99706 0.97471 1.62625 1.18229 1.35000 1.02485 1.20455 0.92403 0.89483 0.91596 1.21028 1.17564 1.02146 0.94372 1.21076 0.95167 0.93143 0.97462 1.21807 1.14523 0.98890 0.99209 1.18829 0.89204 0.93376 0.87334 1.19858 1.32001 0.97843 0.99888 0.90037 1.26772 0.96179 1.01682 0.94508 1.70203 1.29205 1.34959 1.00646 0.85224 0.78122 0.77424 0.79335 1.18474 1.19378 1.19161 1.68658 1.23256 1.02188 1.29712 0.92589 0.94007 0.94118 0.92163 0.91220 0.85762 0.84317 0.84041 0.84279 0.85819 0.89993 0.89628 0.95508 0.89263 0.86836 0.85284 0.87875 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 9.06 71.98 0.65 -3.69 16 2 C 0.09 3.63 1.98 45.00 0.09 3.72 16 3 H 0.06 2.78 6.66 -2.39 -0.02 2.77 16 4 C -0.07 -2.26 2.63 -9.90 -0.03 -2.29 16 5 H 0.08 2.33 7.86 -2.39 -0.02 2.31 16 6 C -0.06 -1.79 4.61 29.85 0.14 -1.65 16 7 C -0.08 -1.92 4.89 -19.87 -0.10 -2.02 16 8 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 9 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 10 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 11 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 12 C -0.13 -2.79 8.57 22.27 0.19 -2.60 16 13 C -0.11 -2.97 6.21 31.49 0.20 -2.78 16 14 C 0.05 1.65 5.87 86.45 0.51 2.15 16 15 N -0.46 -19.43 5.11 -663.58 -3.39 -22.83 16 16 C 0.30 14.73 6.12 133.42 0.82 15.55 16 17 C -0.33 -15.10 9.41 22.73 0.21 -14.89 16 18 C -0.04 -2.02 10.15 22.39 0.23 -1.79 16 19 C -0.32 -16.36 9.83 22.87 0.22 -16.14 16 20 C 0.24 13.35 6.55 40.18 0.26 13.61 16 21 C -0.46 -25.19 9.13 23.46 0.21 -24.97 16 22 H 0.08 4.23 7.86 -2.92 -0.02 4.21 16 23 C 0.03 1.60 5.49 85.29 0.47 2.06 16 24 N -0.73 -36.88 10.29 21.84 0.22 -36.65 16 25 Si 0.98 37.90 29.57 68.60 2.03 39.93 16 26 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 28 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 29 N -0.52 -28.26 5.04 -186.59 -0.94 -29.20 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 2.03 6.52 -2.39 -0.02 2.02 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 34 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.12 2.51 6.93 -2.91 -0.02 2.49 16 40 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.09 2.09 5.40 -2.39 -0.01 2.07 16 42 H 0.03 1.00 7.97 -2.38 -0.02 0.98 16 43 H 0.09 2.78 7.97 -2.39 -0.02 2.76 16 44 H 0.11 4.68 7.83 -2.91 -0.02 4.65 16 45 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 46 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 47 H 0.28 12.71 8.29 -92.71 -0.77 11.94 16 Total: -1.00 -61.97 373.90 3.83 -58.14 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.95 Total: 35.08 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.96 Total: -44.48 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -4.11 Total: -88.68 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -61.97 3.83 -58.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -61.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds