Wall clock time and date at job start Tue Mar 31 2020 14:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.06482 * 2 1 4 4 C 1.53995 * 109.91823 * 238.79921 * 2 1 3 5 5 H 1.08998 * 110.31268 * 120.50062 * 4 2 1 6 6 C 1.52998 * 110.39052 * 358.37989 * 4 2 1 7 7 C 1.50706 * 109.47409 * 177.78181 * 6 4 2 8 8 C 1.38231 * 119.99792 * 269.72899 * 7 6 4 9 9 C 1.38241 * 119.99919 * 179.76072 * 8 7 6 10 10 C 1.38234 * 119.99660 * 0.48894 * 9 8 7 11 11 C 1.38239 * 120.00098 * 359.78129 * 10 9 8 12 12 C 1.38230 * 119.99802 * 89.99288 * 7 6 4 13 13 C 1.54595 * 105.14256 * 239.42033 * 4 2 1 14 14 C 1.54938 * 102.91811 * 338.03912 * 13 4 2 15 15 N 1.47897 * 109.92369 * 121.20774 * 2 1 3 16 16 C 1.38823 * 111.00048 * 265.20034 * 15 2 1 17 17 C 1.39802 * 119.58428 * 302.47202 * 16 15 2 18 18 C 1.38595 * 119.49012 * 179.97438 * 17 16 15 19 19 C 1.38383 * 118.68029 * 0.02562 * 18 17 16 20 20 C 1.40558 * 119.15303 * 0.02562 * 19 18 17 21 21 C 1.41316 * 119.78454 * 179.97438 * 20 19 18 22 22 H 1.08000 * 120.00006 * 351.50392 * 21 20 19 23 23 C 1.40023 * 119.99945 * 171.79116 * 21 20 19 24 24 N 1.30743 * 120.00326 * 164.17504 * 23 21 20 25 25 Si 1.86801 * 119.99743 * 344.16765 * 23 21 20 26 26 H 1.48497 * 109.47153 * 84.68569 * 25 23 21 27 27 H 1.48508 * 109.46970 * 204.68524 * 25 23 21 28 28 H 1.48504 * 109.47177 * 324.68157 * 25 23 21 29 29 N 1.31957 * 119.58462 * 122.73193 * 16 15 2 30 30 H 1.09003 * 109.46803 * 300.24204 * 1 2 3 31 31 H 1.08992 * 109.47270 * 60.24880 * 1 2 3 32 32 H 1.09000 * 109.46392 * 180.24471 * 1 2 3 33 33 H 1.09005 * 109.47456 * 297.77916 * 6 4 2 34 34 H 1.08993 * 109.47759 * 57.77997 * 6 4 2 35 35 H 1.07998 * 120.00192 * 359.97438 * 8 7 6 36 36 H 1.07996 * 120.00165 * 180.24546 * 9 8 7 37 37 H 1.07998 * 120.00122 * 179.76864 * 10 9 8 38 38 H 1.08003 * 119.99783 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.00697 * 0.02562 * 12 7 6 40 40 H 1.09000 * 110.72487 * 219.68723 * 13 4 2 41 41 H 1.08999 * 110.87890 * 96.47171 * 13 4 2 42 42 H 1.08999 * 110.67141 * 278.98083 * 14 13 4 43 43 H 1.09002 * 110.80887 * 155.91700 * 14 13 4 44 44 H 1.07999 * 120.24900 * 0.02569 * 17 16 15 45 45 H 1.07996 * 120.65685 * 179.97438 * 18 17 16 46 46 H 1.07998 * 120.42596 * 179.97438 * 19 18 17 47 47 H 0.96998 * 119.99960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6713 -0.0894 -1.8478 6 6 0.8884 -1.2973 -2.0638 7 6 1.4223 -1.9793 -3.2972 8 6 1.6001 -1.2585 -4.4632 9 6 2.0944 -1.8829 -5.5932 10 6 2.4015 -3.2303 -5.5599 11 6 2.2184 -3.9523 -4.3953 12 6 1.7290 -3.3267 -3.2639 13 6 2.9060 -1.9116 -0.6764 14 6 3.2682 -1.4184 0.7470 15 7 2.0340 -0.7205 1.1892 16 6 2.3055 0.1609 2.2269 17 6 3.2121 1.2059 2.0255 18 6 3.4813 2.0850 3.0625 19 6 2.8395 1.8990 4.2744 20 6 1.9392 0.8288 4.4152 21 6 1.2769 0.6261 5.6470 22 1 1.5618 1.2028 6.5145 23 6 0.2554 -0.3267 5.7441 24 7 -0.1443 -0.7392 6.9186 25 14 -0.5363 -1.0083 4.1956 26 1 0.2801 -2.1352 3.6771 27 1 -1.9044 -1.4923 4.5110 28 1 -0.6142 0.0607 3.1677 29 7 1.7084 -0.0012 3.3924 30 1 -0.3633 0.5176 0.8878 31 1 -0.3633 0.5099 -0.8921 32 1 -0.3632 -1.0277 0.0044 33 1 0.3258 -2.0150 -1.4667 34 1 0.2340 -0.4766 -2.3570 35 1 1.3560 -0.2068 -4.4905 36 1 2.2371 -1.3189 -6.5031 37 1 2.7841 -3.7189 -6.4437 38 1 2.4579 -5.0051 -4.3695 39 1 1.5857 -3.8909 -2.3543 40 1 3.8053 -2.0556 -1.2752 41 1 2.3242 -2.8322 -0.6293 42 1 4.1098 -0.7266 0.7119 43 1 3.4906 -2.2598 1.4034 44 1 3.6983 1.3275 1.0688 45 1 4.1787 2.8985 2.9278 46 1 3.0286 2.5670 5.1016 47 1 -0.8517 -1.3995 6.9859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325709993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:15 Heat of formation + Delta-G solvation = 53.888016 kcal Electronic energy + Delta-G solvation = -26980.498546 eV Core-core repulsion = 23513.175637 eV Total energy + Delta-G solvation = -3467.322909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.27126 -39.22579 -37.80584 -34.40602 -33.41403 -31.36683 -31.26858 -31.09670 -30.94085 -28.83256 -26.47560 -25.45907 -24.80026 -22.82481 -22.03916 -21.68353 -21.58446 -20.19197 -18.83866 -17.63535 -17.08919 -16.64553 -15.55214 -15.32618 -14.97938 -14.91480 -14.72997 -14.49453 -14.22779 -13.84594 -13.57027 -13.25509 -12.98171 -12.82067 -12.71189 -12.53704 -12.27592 -12.15140 -11.88716 -11.69409 -11.43517 -11.36530 -11.12682 -11.03111 -10.80190 -10.74681 -10.67176 -10.49476 -10.34372 -10.25797 -10.07363 -9.23062 -9.06241 -8.77788 -8.63545 -8.41896 -7.79107 -7.41455 -6.93459 -4.71328 1.22504 1.25738 2.38471 2.64529 3.50543 3.62474 3.64285 3.69750 4.17743 4.44587 4.50379 4.56916 4.68159 4.83601 4.83831 4.90138 4.94558 5.09670 5.29080 5.37600 5.41990 5.50983 5.52720 5.57228 5.65035 5.79313 5.81444 5.83826 5.89370 5.93842 5.95958 5.99144 6.05170 6.18585 6.20202 6.28223 6.32684 6.36695 6.40471 6.48962 6.53554 6.57154 6.62066 6.65338 6.87936 7.01142 7.26287 7.29470 7.47326 7.53706 8.03447 8.11794 8.52754 8.60689 9.60167 9.97092 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.003314 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.936622 B = 8446.441645 C = 9098.840804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.061 0.939 4 C -0.084 4.084 5 H 0.074 0.926 6 C -0.075 4.075 7 C -0.072 4.072 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.115 4.115 13 C -0.114 4.114 14 C 0.048 3.952 15 N -0.475 5.475 16 C 0.342 3.658 17 C -0.345 4.345 18 C -0.038 4.038 19 C -0.268 4.268 20 C 0.251 3.749 21 C -0.406 4.406 22 H 0.096 0.904 23 C 0.083 3.917 24 N -0.794 5.794 25 Si 1.002 2.998 26 H -0.266 1.266 27 H -0.335 1.335 28 H -0.267 1.267 29 N -0.546 5.546 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -3.372 -21.177 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 H 0.079 0.921 4 C -0.103 4.103 5 H 0.093 0.907 6 C -0.113 4.113 7 C -0.072 4.072 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.152 4.152 14 C -0.079 4.079 15 N -0.197 5.197 16 C 0.107 3.893 17 C -0.371 4.371 18 C -0.062 4.062 19 C -0.291 4.291 20 C 0.128 3.872 21 C -0.436 4.436 22 H 0.114 0.886 23 C -0.141 4.141 24 N -0.416 5.416 25 Si 0.836 3.164 26 H -0.192 1.192 27 H -0.269 1.269 28 H -0.193 1.193 29 N -0.264 5.264 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.011 -4.493 -20.534 21.116 hybrid contribution 1.011 1.040 -0.783 1.648 sum 3.022 -3.453 -21.318 21.806 Atomic orbital electron populations 1.21901 0.94291 1.02361 1.01255 1.22423 0.96313 0.96311 0.88015 0.92119 1.21982 0.96143 0.96937 0.95282 0.90736 1.20868 0.97264 1.00163 0.92963 1.20027 0.98048 0.93926 0.95235 1.21074 1.00168 0.99795 0.92764 1.21119 0.99504 0.94968 0.98273 1.21105 1.01137 0.94550 0.98097 1.21153 0.99590 0.99800 0.93218 1.21139 0.99350 0.94453 0.98344 1.22568 0.99345 0.98236 0.95030 1.23200 0.90971 0.98314 0.95460 1.61407 1.27150 1.26551 1.04642 1.19299 0.90996 0.89193 0.89841 1.21365 1.11239 1.04192 1.00272 1.20796 0.96061 0.96276 0.93092 1.21582 1.06393 1.03119 0.97956 1.18447 0.90587 0.87525 0.90629 1.19533 1.13340 1.16156 0.94616 0.88582 1.26492 0.95054 0.93128 0.99429 1.69652 1.22634 1.22393 1.26925 0.84505 0.72722 0.80616 0.78530 1.19184 1.26883 1.19321 1.66343 1.29135 1.30559 1.00382 0.92337 0.92560 0.91778 0.90021 0.90474 0.86237 0.86396 0.86490 0.86304 0.85971 0.91322 0.90637 0.93142 0.90163 0.88439 0.88166 0.87531 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.36 37.16 0.31 -1.88 16 2 C 0.08 1.23 2.87 -66.65 -0.19 1.04 16 3 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 4 C -0.08 -1.04 3.01 -89.26 -0.27 -1.31 16 5 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.08 -0.82 3.55 -27.88 -0.10 -0.92 16 7 C -0.07 -0.75 4.89 -104.62 -0.51 -1.26 16 8 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 11 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 12 C -0.11 -1.16 8.85 -39.58 -0.35 -1.51 16 13 C -0.11 -1.43 5.67 -24.87 -0.14 -1.57 16 14 C 0.05 0.77 6.41 -1.90 -0.01 0.76 16 15 N -0.47 -9.19 4.99 -161.75 -0.81 -10.00 16 16 C 0.34 7.76 5.85 -155.32 -0.91 6.85 16 17 C -0.34 -7.22 7.89 -38.87 -0.31 -7.52 16 18 C -0.04 -0.80 10.15 -39.40 -0.40 -1.20 16 19 C -0.27 -6.31 9.83 -38.65 -0.38 -6.69 16 20 C 0.25 6.62 6.28 -85.00 -0.53 6.09 16 21 C -0.41 -11.21 9.65 -37.74 -0.36 -11.57 16 22 H 0.10 2.67 8.06 -52.49 -0.42 2.24 16 23 C 0.08 2.26 5.51 -17.35 -0.10 2.16 16 24 N -0.79 -21.52 13.92 55.55 0.77 -20.75 16 25 Si 1.00 25.27 25.35 -169.99 -4.31 20.96 16 26 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.34 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.27 -6.93 6.58 56.52 0.37 -6.56 16 29 N -0.55 -14.15 5.19 -10.32 -0.05 -14.21 16 30 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 31 H 0.06 0.70 6.80 -51.93 -0.35 0.35 16 32 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 33 H 0.08 0.94 6.78 -51.93 -0.35 0.59 16 34 H 0.08 0.78 6.56 -51.93 -0.34 0.44 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.12 1.16 7.27 -52.49 -0.38 0.78 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.93 6.78 -51.93 -0.35 0.58 16 42 H 0.05 0.81 6.76 -51.93 -0.35 0.46 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.10 1.82 7.03 -52.49 -0.37 1.45 16 45 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.29 7.17 8.29 -40.82 -0.34 6.83 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -29.82 367.08 -11.68 -41.50 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.99 Total: 1.56 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -5.83 Total: -24.60 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.09 Total: -44.96 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.31 Total: 20.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.82 -11.68 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.393 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds