Wall clock time and date at job start Tue Mar 31 2020 14:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.06482 * 2 1 4 4 C 1.53995 * 109.91823 * 238.79921 * 2 1 3 5 5 H 1.08998 * 110.31268 * 120.50062 * 4 2 1 6 6 C 1.52998 * 110.39052 * 358.37989 * 4 2 1 7 7 C 1.50706 * 109.47409 * 177.78181 * 6 4 2 8 8 C 1.38231 * 119.99792 * 269.72899 * 7 6 4 9 9 C 1.38241 * 119.99919 * 179.76072 * 8 7 6 10 10 C 1.38234 * 119.99660 * 0.48894 * 9 8 7 11 11 C 1.38239 * 120.00098 * 359.78129 * 10 9 8 12 12 C 1.38230 * 119.99802 * 89.99288 * 7 6 4 13 13 C 1.54595 * 105.14256 * 239.42033 * 4 2 1 14 14 C 1.54938 * 102.91811 * 338.03912 * 13 4 2 15 15 N 1.47897 * 109.92369 * 121.20774 * 2 1 3 16 16 C 1.38823 * 111.00048 * 265.20034 * 15 2 1 17 17 C 1.39802 * 119.58428 * 302.47202 * 16 15 2 18 18 C 1.38595 * 119.49012 * 179.97438 * 17 16 15 19 19 C 1.38383 * 118.68029 * 0.02562 * 18 17 16 20 20 C 1.40558 * 119.15303 * 0.02562 * 19 18 17 21 21 C 1.41316 * 119.78454 * 179.97438 * 20 19 18 22 22 H 1.08000 * 120.00006 * 351.50392 * 21 20 19 23 23 C 1.40023 * 119.99945 * 171.79116 * 21 20 19 24 24 N 1.30743 * 120.00326 * 164.17504 * 23 21 20 25 25 Si 1.86801 * 119.99743 * 344.16765 * 23 21 20 26 26 H 1.48497 * 109.47153 * 84.68569 * 25 23 21 27 27 H 1.48508 * 109.46970 * 204.68524 * 25 23 21 28 28 H 1.48504 * 109.47177 * 324.68157 * 25 23 21 29 29 N 1.31957 * 119.58462 * 122.73193 * 16 15 2 30 30 H 1.09003 * 109.46803 * 300.24204 * 1 2 3 31 31 H 1.08992 * 109.47270 * 60.24880 * 1 2 3 32 32 H 1.09000 * 109.46392 * 180.24471 * 1 2 3 33 33 H 1.09005 * 109.47456 * 297.77916 * 6 4 2 34 34 H 1.08993 * 109.47759 * 57.77997 * 6 4 2 35 35 H 1.07998 * 120.00192 * 359.97438 * 8 7 6 36 36 H 1.07996 * 120.00165 * 180.24546 * 9 8 7 37 37 H 1.07998 * 120.00122 * 179.76864 * 10 9 8 38 38 H 1.08003 * 119.99783 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.00697 * 0.02562 * 12 7 6 40 40 H 1.09000 * 110.72487 * 219.68723 * 13 4 2 41 41 H 1.08999 * 110.87890 * 96.47171 * 13 4 2 42 42 H 1.08999 * 110.67141 * 278.98083 * 14 13 4 43 43 H 1.09002 * 110.80887 * 155.91700 * 14 13 4 44 44 H 1.07999 * 120.24900 * 0.02569 * 17 16 15 45 45 H 1.07996 * 120.65685 * 179.97438 * 18 17 16 46 46 H 1.07998 * 120.42596 * 179.97438 * 19 18 17 47 47 H 0.96998 * 119.99960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6713 -0.0894 -1.8478 6 6 0.8884 -1.2973 -2.0638 7 6 1.4223 -1.9793 -3.2972 8 6 1.6001 -1.2585 -4.4632 9 6 2.0944 -1.8829 -5.5932 10 6 2.4015 -3.2303 -5.5599 11 6 2.2184 -3.9523 -4.3953 12 6 1.7290 -3.3267 -3.2639 13 6 2.9060 -1.9116 -0.6764 14 6 3.2682 -1.4184 0.7470 15 7 2.0340 -0.7205 1.1892 16 6 2.3055 0.1609 2.2269 17 6 3.2121 1.2059 2.0255 18 6 3.4813 2.0850 3.0625 19 6 2.8395 1.8990 4.2744 20 6 1.9392 0.8288 4.4152 21 6 1.2769 0.6261 5.6470 22 1 1.5618 1.2028 6.5145 23 6 0.2554 -0.3267 5.7441 24 7 -0.1443 -0.7392 6.9186 25 14 -0.5363 -1.0083 4.1956 26 1 0.2801 -2.1352 3.6771 27 1 -1.9044 -1.4923 4.5110 28 1 -0.6142 0.0607 3.1677 29 7 1.7084 -0.0012 3.3924 30 1 -0.3633 0.5176 0.8878 31 1 -0.3633 0.5099 -0.8921 32 1 -0.3632 -1.0277 0.0044 33 1 0.3258 -2.0150 -1.4667 34 1 0.2340 -0.4766 -2.3570 35 1 1.3560 -0.2068 -4.4905 36 1 2.2371 -1.3189 -6.5031 37 1 2.7841 -3.7189 -6.4437 38 1 2.4579 -5.0051 -4.3695 39 1 1.5857 -3.8909 -2.3543 40 1 3.8053 -2.0556 -1.2752 41 1 2.3242 -2.8322 -0.6293 42 1 4.1098 -0.7266 0.7119 43 1 3.4906 -2.2598 1.4034 44 1 3.6983 1.3275 1.0688 45 1 4.1787 2.8985 2.9278 46 1 3.0286 2.5670 5.1016 47 1 -0.8517 -1.3995 6.9859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325709993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:13 Heat of formation + Delta-G solvation = 39.698633 kcal Electronic energy + Delta-G solvation = -26981.113843 eV Core-core repulsion = 23513.175637 eV Total energy + Delta-G solvation = -3467.938206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.58979 -40.25431 -39.23545 -35.90979 -35.02253 -33.04027 -32.53459 -32.37498 -31.66880 -30.31433 -27.74826 -27.15323 -25.90057 -23.74846 -23.52548 -23.27736 -22.38115 -21.57655 -20.07635 -19.53024 -18.43381 -17.51826 -16.88479 -16.58681 -16.57016 -16.38883 -15.99633 -15.67935 -15.44765 -15.04869 -14.64524 -14.49308 -14.45497 -14.24663 -14.00807 -13.85874 -13.53669 -13.29626 -13.24173 -13.06505 -12.91294 -12.70105 -12.67701 -12.51085 -12.15411 -12.02856 -11.93601 -11.87723 -11.58293 -11.48049 -11.34806 -11.29377 -10.43440 -10.10363 -9.73306 -9.65354 -9.47990 -9.15466 -8.93387 -6.74029 0.52744 0.55256 0.58761 0.81819 1.44638 1.58036 1.65016 2.44299 2.51394 2.77467 2.95741 3.47731 3.54658 3.79528 3.84177 4.08759 4.11086 4.20848 4.23832 4.24684 4.33959 4.38983 4.42794 4.51971 4.54462 4.60616 4.64298 4.71779 4.72651 4.75835 4.78779 4.84187 4.88415 4.94574 5.01846 5.10993 5.14874 5.17315 5.22116 5.26315 5.34155 5.41889 5.45891 5.66093 5.67194 5.71288 5.80610 5.83302 5.97043 5.99644 6.21901 6.30936 6.54049 6.71911 7.73162 7.99897 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.003314 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.936622 B = 8446.441645 C = 9098.840804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.071 4.071 5 H 0.091 0.909 6 C -0.069 4.069 7 C -0.083 4.083 8 C -0.128 4.128 9 C -0.127 4.127 10 C -0.136 4.136 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.101 4.101 14 C 0.045 3.955 15 N -0.500 5.500 16 C 0.330 3.670 17 C -0.323 4.323 18 C -0.031 4.031 19 C -0.283 4.283 20 C 0.239 3.761 21 C -0.447 4.447 22 H 0.078 0.922 23 C 0.058 3.942 24 N -0.825 5.825 25 Si 1.052 2.948 26 H -0.285 1.285 27 H -0.326 1.326 28 H -0.283 1.283 29 N -0.575 5.575 30 H 0.017 0.983 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.131 0.869 45 H 0.144 0.856 46 H 0.116 0.884 47 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -2.973 -25.295 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.074 0.926 4 C -0.090 4.090 5 H 0.110 0.890 6 C -0.106 4.106 7 C -0.083 4.083 8 C -0.146 4.146 9 C -0.145 4.145 10 C -0.153 4.153 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.082 4.082 15 N -0.224 5.224 16 C 0.096 3.904 17 C -0.348 4.348 18 C -0.055 4.055 19 C -0.305 4.305 20 C 0.114 3.886 21 C -0.479 4.479 22 H 0.096 0.904 23 C -0.162 4.162 24 N -0.450 5.450 25 Si 0.888 3.112 26 H -0.212 1.212 27 H -0.259 1.259 28 H -0.210 1.210 29 N -0.295 5.295 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.162 0.838 46 H 0.134 0.866 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.496 -4.098 -24.675 25.256 hybrid contribution 0.731 0.972 0.237 1.239 sum 4.226 -3.125 -24.439 24.998 Atomic orbital electron populations 1.21910 0.94467 1.02188 1.00885 1.22541 0.96209 0.96242 0.88251 0.92647 1.21906 0.96678 0.96566 0.93819 0.89044 1.20763 0.96648 1.00243 0.92939 1.19976 0.98949 0.94108 0.95254 1.21281 1.00111 1.00489 0.92715 1.21420 0.98933 0.95275 0.98844 1.21423 1.00551 0.94734 0.98638 1.21400 0.99374 1.00703 0.93163 1.21257 0.99872 0.94634 0.98823 1.22518 1.00291 0.98222 0.92861 1.23286 0.89954 0.97710 0.97235 1.61427 1.28928 1.26745 1.05271 1.19788 0.90699 0.90181 0.89747 1.21823 1.09129 1.02382 1.01455 1.21272 0.95584 0.96964 0.91665 1.21790 1.06351 1.02688 0.99680 1.18621 0.91064 0.88416 0.90500 1.19514 1.15431 1.17843 0.95100 0.90379 1.26858 0.95341 0.93387 1.00570 1.69648 1.24080 1.23899 1.27373 0.83753 0.72317 0.78771 0.76389 1.21211 1.25857 1.21033 1.66235 1.30373 1.31222 1.01624 0.96367 0.89158 0.91873 0.91061 0.89513 0.85060 0.84480 0.84562 0.84909 0.86051 0.89162 0.90587 0.92648 0.91549 0.85112 0.83782 0.86554 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.36 71.98 0.60 -3.52 16 2 C 0.07 2.22 2.87 45.06 0.13 2.35 16 3 H 0.06 1.70 6.49 -2.39 -0.02 1.68 16 4 C -0.07 -1.52 3.01 -9.92 -0.03 -1.55 16 5 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.07 -1.30 3.55 29.85 0.11 -1.20 16 7 C -0.08 -1.49 4.89 -19.87 -0.10 -1.58 16 8 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 9 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 10 C -0.14 -1.96 10.05 22.27 0.22 -1.73 16 11 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 12 C -0.13 -2.29 8.85 22.27 0.20 -2.09 16 13 C -0.10 -2.26 5.67 31.80 0.18 -2.08 16 14 C 0.04 1.36 6.41 86.65 0.56 1.91 16 15 N -0.50 -18.82 4.99 -665.66 -3.32 -22.14 16 16 C 0.33 14.65 5.85 133.42 0.78 15.43 16 17 C -0.32 -12.55 7.89 22.73 0.18 -12.37 16 18 C -0.03 -1.20 10.15 22.39 0.23 -0.97 16 19 C -0.28 -13.16 9.83 22.87 0.22 -12.94 16 20 C 0.24 12.86 6.28 40.18 0.25 13.11 16 21 C -0.45 -25.89 9.65 23.46 0.23 -25.66 16 22 H 0.08 4.62 8.06 -2.91 -0.02 4.60 16 23 C 0.06 3.33 5.51 85.29 0.47 3.80 16 24 N -0.83 -46.67 13.92 21.84 0.30 -46.37 16 25 Si 1.05 54.52 25.35 68.60 1.74 56.26 16 26 H -0.28 -15.37 7.11 99.48 0.71 -14.66 16 27 H -0.33 -15.93 7.11 99.48 0.71 -15.23 16 28 H -0.28 -15.19 6.58 99.48 0.65 -14.53 16 29 N -0.58 -30.26 5.19 -186.58 -0.97 -31.23 16 30 H 0.02 0.67 7.91 -2.39 -0.02 0.65 16 31 H 0.09 2.03 6.80 -2.39 -0.02 2.02 16 32 H 0.06 1.88 6.73 -2.39 -0.02 1.87 16 33 H 0.07 1.51 6.78 -2.38 -0.02 1.49 16 34 H 0.09 1.46 6.56 -2.39 -0.02 1.45 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.12 2.10 7.27 -2.91 -0.02 2.08 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.72 6.78 -2.39 -0.02 1.70 16 42 H 0.06 1.61 6.76 -2.39 -0.02 1.59 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.13 4.25 7.03 -2.91 -0.02 4.23 16 45 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 47 H 0.30 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -67.02 367.08 3.55 -63.47 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.90 Total: 14.38 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 4.89 Total: -34.38 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.99 Total: -99.73 kcal Atomic # 14 Polarization: 54.52 SS G_CDS: 1.74 Total: 56.26 kcal Total: -67.02 3.55 -63.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.172 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds