Wall clock time and date at job start Tue Mar 31 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46502 * 109.47052 * 240.00013 * 2 1 3 5 5 C 1.38820 * 120.00010 * 85.00143 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47152 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47083 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47241 * 240.00067 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50697 * 109.46813 * 119.99973 * 2 1 3 20 20 C 1.38263 * 120.11671 * 80.00549 * 19 2 1 21 21 C 1.37931 * 119.77463 * 180.12284 * 20 19 2 22 22 C 1.38915 * 120.54472 * 0.03189 * 21 20 19 23 23 C 1.37658 * 119.68172 * 359.72473 * 22 21 20 24 24 C 1.37935 * 120.11347 * 259.72270 * 19 2 1 25 25 C 1.50627 * 122.56345 * 180.46530 * 23 22 21 26 26 C 1.52736 * 110.57511 * 342.07621 * 25 23 22 27 27 C 1.53330 * 108.37979 * 51.17046 * 26 25 23 28 28 C 1.50630 * 117.75137 * 179.35042 * 22 21 20 29 29 H 1.08999 * 109.46694 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46877 * 299.99892 * 1 2 3 31 31 H 1.09000 * 109.47039 * 59.99922 * 1 2 3 32 32 H 0.96996 * 119.99993 * 265.00087 * 4 2 1 33 33 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 36 36 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 37 37 H 1.08007 * 120.10984 * 0.13829 * 20 19 2 38 38 H 1.08001 * 119.72514 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.73208 * 359.96532 * 24 19 2 40 40 H 1.08997 * 109.25510 * 102.36267 * 25 23 22 41 41 H 1.08994 * 109.25498 * 221.79623 * 25 23 22 42 42 H 1.09004 * 109.68117 * 170.89028 * 26 25 23 43 43 H 1.08998 * 109.68442 * 291.44834 * 26 25 23 44 44 H 1.08999 * 109.67588 * 49.88001 * 27 26 25 45 45 H 1.09001 * 109.67883 * 170.42268 * 27 26 25 46 46 H 1.09010 * 109.24808 * 282.85627 * 28 22 21 47 47 H 1.08994 * 109.25471 * 42.28198 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1510 0.0019 -2.3920 6 6 1.8155 1.3581 -2.4450 7 6 1.9492 2.0477 -3.6398 8 6 2.4090 1.3655 -4.7526 9 6 2.7351 0.0035 -4.6342 10 6 3.2109 -0.7049 -5.7607 11 1 3.3271 -0.1985 -6.7075 12 6 3.5317 -2.0633 -5.6493 13 7 3.3915 -2.6763 -4.5030 14 14 4.1600 -2.9998 -7.1385 15 1 4.2274 -2.0849 -8.3063 16 1 5.5144 -3.5363 -6.8505 17 1 3.2371 -4.1227 -7.4426 18 7 2.5921 -0.6281 -3.4642 19 6 2.0323 -0.7104 1.2305 20 6 2.0678 -2.0921 1.2679 21 6 2.5265 -2.7350 2.3987 22 6 2.9528 -2.0059 3.5016 23 6 2.9222 -0.6302 3.4624 24 6 2.4637 0.0156 2.3211 25 6 3.3783 0.2241 4.6162 26 6 3.4317 -0.5964 5.9033 27 6 4.2424 -1.8693 5.6320 28 6 3.4273 -2.7723 4.7084 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 1.4558 1.8646 -1.5616 34 1 1.6951 3.0956 -3.7022 35 1 2.5198 1.8742 -5.6987 36 1 3.6141 -3.6172 -4.4257 37 1 1.7378 -2.6659 0.4145 38 1 2.5543 -3.8143 2.4270 39 1 2.4405 1.0948 2.2892 40 1 4.3708 0.6194 4.4004 41 1 2.6825 1.0528 4.7468 42 1 3.9134 -0.0151 6.6895 43 1 2.4207 -0.8637 6.2106 44 1 5.1854 -1.6084 5.1517 45 1 4.4390 -2.3865 6.5711 46 1 2.5642 -3.1570 5.2519 47 1 4.0476 -3.6072 4.3828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:45 Heat of formation + Delta-G solvation = 41.431504 kcal Electronic energy + Delta-G solvation = -26186.965597 eV Core-core repulsion = 22719.102534 eV Total energy + Delta-G solvation = -3467.863064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.20468 -38.38925 -36.97630 -34.94113 -33.35505 -32.61998 -31.24324 -30.20846 -29.45136 -28.54169 -27.85606 -25.38147 -23.98550 -23.30638 -22.28844 -21.69610 -21.23162 -20.20802 -18.84706 -17.30361 -16.77120 -16.19082 -15.53386 -15.17250 -14.86851 -14.61771 -14.41618 -14.24916 -14.03327 -13.75106 -13.56719 -13.29399 -13.09971 -12.88995 -12.72085 -12.57361 -12.29204 -11.98952 -11.83738 -11.61647 -11.59299 -11.29756 -11.18322 -11.10937 -10.94616 -10.86774 -10.60106 -10.52020 -10.34843 -10.31216 -9.85829 -9.50035 -8.88742 -8.64107 -8.36099 -7.88222 -7.47131 -6.47788 -6.29556 -4.44013 1.40005 1.45822 2.89060 3.13268 3.17705 3.27520 3.32417 3.74848 4.00750 4.24328 4.50100 4.53430 4.67947 4.85827 4.89411 4.96458 5.01021 5.10259 5.32657 5.34737 5.38007 5.46850 5.52303 5.64951 5.67047 5.72960 5.77088 5.81015 5.85738 5.96663 6.04461 6.10040 6.10721 6.16591 6.20818 6.22987 6.46507 6.56083 6.60361 6.67287 6.75767 6.89241 6.93635 7.00437 7.09220 7.28525 7.63666 7.85058 7.96028 8.20456 8.40548 8.72201 8.83913 9.15932 10.28150 10.43868 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.002897 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.189464 B = 9662.878054 C =10763.407667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 H 0.083 0.917 4 N -0.731 5.731 5 C 0.414 3.586 6 C -0.368 4.368 7 C -0.032 4.032 8 C -0.318 4.318 9 C 0.293 3.707 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.904 3.096 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.532 5.532 19 C -0.079 4.079 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.084 4.084 23 C -0.078 4.078 24 C -0.112 4.112 25 C -0.080 4.080 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.079 4.079 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.268 0.732 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 0.013 18.995 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.100 0.900 4 N -0.368 5.368 5 C 0.174 3.826 6 C -0.394 4.394 7 C -0.057 4.057 8 C -0.341 4.341 9 C 0.166 3.834 10 C -0.467 4.467 11 H 0.101 0.899 12 C -0.154 4.154 13 N -0.337 5.337 14 Si 0.728 3.272 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.253 5.253 19 C -0.079 4.079 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.116 4.116 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.940 -0.905 19.214 19.258 hybrid contribution 0.095 0.099 -0.803 0.815 sum -0.844 -0.806 18.411 18.448 Atomic orbital electron populations 1.22270 0.95676 1.02150 1.01804 1.19509 0.93152 0.95951 0.81964 0.89958 1.44285 1.74225 1.12188 1.06086 1.18505 0.89711 0.87582 0.86777 1.20629 1.25012 0.95127 0.98588 1.20596 0.95247 0.96899 0.92912 1.21523 1.17462 0.97082 0.97998 1.18203 0.87267 0.88095 0.89875 1.19609 1.37152 0.93985 0.95912 0.89902 1.26047 0.94458 0.98271 0.96600 1.70165 1.29968 1.09779 1.23809 0.86337 0.78887 0.79768 0.82166 1.18465 1.19975 1.19983 1.68209 1.23443 1.36028 0.97627 1.19987 0.98516 0.94005 0.95428 1.20921 0.99569 0.94135 0.97974 1.21099 0.99759 0.99575 0.93160 1.19529 1.00314 0.92885 0.95695 1.19494 0.99877 0.93006 0.95411 1.20966 0.99670 0.99625 0.92781 1.20449 1.01562 0.97238 0.92410 1.21538 1.00622 0.96517 0.96940 1.21547 0.98845 0.96182 0.99179 1.20438 0.99634 0.97597 0.93886 0.92632 0.92645 0.91498 0.76961 0.89092 0.89010 0.88784 0.92063 0.85841 0.86322 0.86184 0.90756 0.90897 0.91629 0.91702 0.91603 0.91660 0.90936 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.38 37.16 0.35 -2.04 16 2 C 0.20 3.29 2.46 -69.08 -0.17 3.12 16 3 H 0.08 1.38 6.29 -51.93 -0.33 1.05 16 4 N -0.73 -14.96 5.19 -55.03 -0.29 -15.25 16 5 C 0.41 10.21 7.63 -155.33 -1.18 9.03 16 6 C -0.37 -8.53 8.84 -38.86 -0.34 -8.87 16 7 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 8 C -0.32 -8.16 9.83 -38.65 -0.38 -8.54 16 9 C 0.29 8.27 6.55 -85.00 -0.56 7.71 16 10 C -0.43 -11.94 9.14 -37.74 -0.34 -12.29 16 11 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 12 C 0.07 1.85 5.50 -17.35 -0.10 1.75 16 13 N -0.72 -19.25 11.46 55.55 0.64 -18.62 16 14 Si 0.90 18.99 29.56 -169.99 -5.02 13.97 16 15 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 N -0.53 -14.89 7.89 -10.33 -0.08 -14.97 16 19 C -0.08 -1.16 4.95 -104.73 -0.52 -1.67 16 20 C -0.11 -1.54 9.06 -39.68 -0.36 -1.90 16 21 C -0.12 -1.49 9.61 -39.44 -0.38 -1.87 16 22 C -0.08 -0.99 5.74 -104.62 -0.60 -1.59 16 23 C -0.08 -0.93 5.74 -104.62 -0.60 -1.53 16 24 C -0.11 -1.47 9.24 -39.44 -0.36 -1.84 16 25 C -0.08 -0.74 5.67 -28.05 -0.16 -0.89 16 26 C -0.12 -0.92 5.98 -26.70 -0.16 -1.08 16 27 C -0.12 -0.95 5.98 -26.70 -0.16 -1.11 16 28 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 32 H 0.39 8.17 7.00 -40.82 -0.29 7.89 16 33 H 0.09 1.87 6.04 -52.49 -0.32 1.55 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 37 H 0.12 1.79 6.93 -52.48 -0.36 1.42 16 38 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 39 H 0.12 1.40 8.02 -52.49 -0.42 0.98 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 47 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -30.22 376.05 -12.82 -43.04 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.15 Total: 11.80 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -6.59 Total: -25.64 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.27 Total: -48.84 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.22 -12.82 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.472 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds