Wall clock time and date at job start Tue Mar 31 2020 14:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46502 * 109.47052 * 240.00013 * 2 1 3 5 5 C 1.38820 * 120.00010 * 85.00143 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47152 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47083 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47241 * 240.00067 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50697 * 109.46813 * 119.99973 * 2 1 3 20 20 C 1.38263 * 120.11671 * 80.00549 * 19 2 1 21 21 C 1.37931 * 119.77463 * 180.12284 * 20 19 2 22 22 C 1.38915 * 120.54472 * 0.03189 * 21 20 19 23 23 C 1.37658 * 119.68172 * 359.72473 * 22 21 20 24 24 C 1.37935 * 120.11347 * 259.72270 * 19 2 1 25 25 C 1.50627 * 122.56345 * 180.46530 * 23 22 21 26 26 C 1.52736 * 110.57511 * 342.07621 * 25 23 22 27 27 C 1.53330 * 108.37979 * 51.17046 * 26 25 23 28 28 C 1.50630 * 117.75137 * 179.35042 * 22 21 20 29 29 H 1.08999 * 109.46694 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46877 * 299.99892 * 1 2 3 31 31 H 1.09000 * 109.47039 * 59.99922 * 1 2 3 32 32 H 0.96996 * 119.99993 * 265.00087 * 4 2 1 33 33 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 36 36 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 37 37 H 1.08007 * 120.10984 * 0.13829 * 20 19 2 38 38 H 1.08001 * 119.72514 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.73208 * 359.96532 * 24 19 2 40 40 H 1.08997 * 109.25510 * 102.36267 * 25 23 22 41 41 H 1.08994 * 109.25498 * 221.79623 * 25 23 22 42 42 H 1.09004 * 109.68117 * 170.89028 * 26 25 23 43 43 H 1.08998 * 109.68442 * 291.44834 * 26 25 23 44 44 H 1.08999 * 109.67588 * 49.88001 * 27 26 25 45 45 H 1.09001 * 109.67883 * 170.42268 * 27 26 25 46 46 H 1.09010 * 109.24808 * 282.85627 * 28 22 21 47 47 H 1.08994 * 109.25471 * 42.28198 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1510 0.0019 -2.3920 6 6 1.8155 1.3581 -2.4450 7 6 1.9492 2.0477 -3.6398 8 6 2.4090 1.3655 -4.7526 9 6 2.7351 0.0035 -4.6342 10 6 3.2109 -0.7049 -5.7607 11 1 3.3271 -0.1985 -6.7075 12 6 3.5317 -2.0633 -5.6493 13 7 3.3915 -2.6763 -4.5030 14 14 4.1600 -2.9998 -7.1385 15 1 4.2274 -2.0849 -8.3063 16 1 5.5144 -3.5363 -6.8505 17 1 3.2371 -4.1227 -7.4426 18 7 2.5921 -0.6281 -3.4642 19 6 2.0323 -0.7104 1.2305 20 6 2.0678 -2.0921 1.2679 21 6 2.5265 -2.7350 2.3987 22 6 2.9528 -2.0059 3.5016 23 6 2.9222 -0.6302 3.4624 24 6 2.4637 0.0156 2.3211 25 6 3.3783 0.2241 4.6162 26 6 3.4317 -0.5964 5.9033 27 6 4.2424 -1.8693 5.6320 28 6 3.4273 -2.7723 4.7084 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 1.4558 1.8646 -1.5616 34 1 1.6951 3.0956 -3.7022 35 1 2.5198 1.8742 -5.6987 36 1 3.6141 -3.6172 -4.4257 37 1 1.7378 -2.6659 0.4145 38 1 2.5543 -3.8143 2.4270 39 1 2.4405 1.0948 2.2892 40 1 4.3708 0.6194 4.4004 41 1 2.6825 1.0528 4.7468 42 1 3.9134 -0.0151 6.6895 43 1 2.4207 -0.8637 6.2106 44 1 5.1854 -1.6084 5.1517 45 1 4.4390 -2.3865 6.5711 46 1 2.5642 -3.1570 5.2519 47 1 4.0476 -3.6072 4.3828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:44 Heat of formation + Delta-G solvation = 28.279496 kcal Electronic energy + Delta-G solvation = -26187.535911 eV Core-core repulsion = 22719.102534 eV Total energy + Delta-G solvation = -3468.433377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.19680 -40.13050 -38.20128 -36.22469 -35.16226 -33.58530 -32.75146 -32.00079 -30.45594 -29.92520 -29.19375 -27.30840 -24.98848 -24.26273 -23.43974 -23.24197 -22.67283 -21.66191 -19.87634 -19.14821 -18.33575 -17.35012 -16.72015 -16.53378 -16.38251 -15.96371 -15.77376 -15.36206 -15.27435 -14.91462 -14.73836 -14.66481 -14.35583 -14.20051 -14.05731 -13.65673 -13.54170 -13.38160 -13.14203 -12.89746 -12.76923 -12.71804 -12.59951 -12.52076 -12.19749 -12.17180 -11.87988 -11.72786 -11.69815 -11.34839 -11.28471 -11.16586 -10.68549 -9.84535 -9.63873 -9.45266 -9.34210 -8.30143 -8.22682 -6.47640 0.37697 0.45315 1.05739 1.35559 1.40411 1.55758 1.56712 2.24444 2.57412 2.84197 2.92880 3.58782 3.75856 3.88028 4.02558 4.05301 4.06956 4.14876 4.24920 4.36249 4.37640 4.42911 4.46178 4.58431 4.66495 4.68851 4.72586 4.81472 4.90392 4.96611 4.97280 5.00578 5.01376 5.06330 5.10347 5.14210 5.15703 5.20144 5.27461 5.34457 5.36923 5.47692 5.57084 5.65578 5.73264 5.75031 5.97310 6.08917 6.11642 6.23032 6.56774 6.83417 6.93711 7.22138 8.34969 8.51565 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.002897 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.189464 B = 9662.878054 C =10763.407667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.202 3.798 3 H 0.081 0.919 4 N -0.727 5.727 5 C 0.398 3.602 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.345 4.345 9 C 0.259 3.741 10 C -0.471 4.471 11 H 0.086 0.914 12 C 0.025 3.975 13 N -0.752 5.752 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.267 1.267 18 N -0.567 5.567 19 C -0.095 4.095 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.082 4.082 24 C -0.119 4.119 25 C -0.081 4.081 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.079 4.079 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.389 0.611 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.275 0.725 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 0.288 21.082 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.096 3.904 3 H 0.099 0.901 4 N -0.362 5.362 5 C 0.158 3.842 6 C -0.391 4.391 7 C -0.054 4.054 8 C -0.368 4.368 9 C 0.131 3.869 10 C -0.503 4.503 11 H 0.104 0.896 12 C -0.197 4.197 13 N -0.374 5.374 14 Si 0.807 3.193 15 H -0.178 1.178 16 H -0.192 1.192 17 H -0.192 1.192 18 N -0.289 5.289 19 C -0.095 4.095 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.117 4.117 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.713 -0.608 21.350 21.371 hybrid contribution -0.017 0.060 -1.273 1.275 sum -0.729 -0.548 20.077 20.098 Atomic orbital electron populations 1.22176 0.94498 1.02062 1.02271 1.19671 0.93979 0.95576 0.81140 0.90129 1.44491 1.73544 1.12017 1.06128 1.18940 0.89348 0.88678 0.87284 1.20965 1.23802 0.94646 0.99636 1.21016 0.93691 0.98617 0.92087 1.21683 1.19043 0.96682 0.99372 1.18689 0.88099 0.89532 0.90530 1.19953 1.38821 0.95381 0.96156 0.89599 1.26969 0.94132 0.98650 0.99910 1.70267 1.30724 1.10380 1.26071 0.85110 0.78314 0.78059 0.77865 1.17837 1.19202 1.19173 1.68177 1.24965 1.37302 0.98500 1.19852 1.00243 0.94147 0.95273 1.20928 1.00838 0.94223 0.98434 1.21330 0.99448 1.00538 0.92949 1.19930 0.99184 0.93224 0.96313 1.19871 0.98923 0.93491 0.95878 1.21176 0.99443 1.00357 0.92722 1.20529 1.01818 0.97334 0.92066 1.21549 1.00916 0.96381 0.96515 1.21566 0.98224 0.96246 0.99645 1.20519 1.00370 0.97673 0.93066 0.93050 0.89845 0.93151 0.77544 0.86267 0.85255 0.88008 0.91468 0.87113 0.84852 0.84874 0.90466 0.89799 0.89857 0.91547 0.92318 0.89752 0.89712 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.38 71.98 0.68 -3.76 16 2 C 0.20 6.59 2.46 44.25 0.11 6.69 16 3 H 0.08 2.64 6.29 -2.38 -0.02 2.62 16 4 N -0.73 -30.59 5.19 -328.00 -1.70 -32.29 16 5 C 0.40 20.11 7.63 133.42 1.02 21.13 16 6 C -0.36 -16.80 8.84 22.73 0.20 -16.60 16 7 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 8 C -0.34 -18.10 9.83 22.87 0.22 -17.87 16 9 C 0.26 15.19 6.55 40.18 0.26 15.45 16 10 C -0.47 -26.87 9.14 23.46 0.21 -26.65 16 11 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 12 C 0.02 1.32 5.50 85.29 0.47 1.79 16 13 N -0.75 -41.90 11.46 21.84 0.25 -41.65 16 14 Si 0.99 39.72 29.56 68.60 2.03 41.74 16 15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 18 N -0.57 -33.00 7.89 -186.59 -1.47 -34.47 16 19 C -0.09 -2.76 4.95 -19.93 -0.10 -2.86 16 20 C -0.13 -3.66 9.06 22.20 0.20 -3.46 16 21 C -0.12 -3.09 9.61 22.36 0.21 -2.88 16 22 C -0.09 -1.91 5.74 -19.86 -0.11 -2.02 16 23 C -0.08 -1.81 5.74 -19.86 -0.11 -1.92 16 24 C -0.12 -2.98 9.24 22.36 0.21 -2.77 16 25 C -0.08 -1.28 5.67 29.74 0.17 -1.11 16 26 C -0.12 -1.44 5.98 30.62 0.18 -1.26 16 27 C -0.12 -1.55 5.98 30.62 0.18 -1.37 16 28 C -0.08 -1.25 5.67 29.74 0.17 -1.08 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.63 7.64 -2.39 -0.02 1.61 16 32 H 0.39 16.97 7.00 -92.71 -0.65 16.32 16 33 H 0.12 4.71 6.04 -2.91 -0.02 4.70 16 34 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.27 13.83 8.29 -92.71 -0.77 13.06 16 37 H 0.11 3.40 6.93 -2.91 -0.02 3.38 16 38 H 0.13 2.78 8.05 -2.91 -0.02 2.76 16 39 H 0.13 2.89 8.02 -2.91 -0.02 2.86 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.82 8.10 -2.39 -0.02 0.81 16 44 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -67.69 376.05 3.83 -63.86 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: 0.32 Total: 44.53 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.40 Total: -41.72 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -2.92 Total: -108.41 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -67.69 3.83 -63.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.139 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds