Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.90811 * 2 1 4 4 C 1.53992 * 109.91957 * 238.89752 * 2 1 3 5 5 C 1.54602 * 105.22770 * 239.37430 * 4 2 1 6 6 H 1.09000 * 110.71986 * 96.45085 * 5 4 2 7 7 C 1.50703 * 110.72233 * 219.73143 * 5 4 2 8 8 C 1.38233 * 119.99821 * 39.82922 * 7 5 4 9 9 C 1.38240 * 119.99210 * 179.76296 * 8 7 5 10 10 C 1.38230 * 120.00381 * 0.51099 * 9 8 7 11 11 C 1.38238 * 120.00059 * 359.74233 * 10 9 8 12 12 C 1.38234 * 119.99603 * 220.10067 * 7 5 4 13 13 C 1.55101 * 102.84471 * 338.14907 * 5 4 2 14 14 H 1.08998 * 110.82837 * 155.84701 * 13 5 4 15 15 C 1.52995 * 110.59367 * 278.87473 * 13 5 4 16 16 N 1.47895 * 109.91672 * 121.30721 * 2 1 3 17 17 C 1.38824 * 111.00335 * 265.19744 * 16 2 1 18 18 C 1.39799 * 119.58637 * 147.13922 * 17 16 2 19 19 C 1.38599 * 119.48523 * 179.77346 * 18 17 16 20 20 C 1.38382 * 118.68546 * 0.48883 * 19 18 17 21 21 C 1.40556 * 119.14721 * 359.75511 * 20 19 18 22 22 C 1.41316 * 119.78176 * 180.02562 * 21 20 19 23 23 H 1.07997 * 120.00244 * 7.21955 * 22 21 20 24 24 C 1.40031 * 119.99838 * 187.21617 * 22 21 20 25 25 N 1.30742 * 119.99959 * 7.26961 * 24 22 21 26 26 Si 1.86795 * 119.99795 * 187.26620 * 24 22 21 27 27 H 1.48508 * 109.47118 * 90.00219 * 26 24 22 28 28 H 1.48502 * 109.47374 * 209.99899 * 26 24 22 29 29 H 1.48493 * 109.47342 * 330.00223 * 26 24 22 30 30 N 1.31953 * 119.57919 * 327.40820 * 17 16 2 31 31 H 1.08998 * 109.47156 * 179.64442 * 1 2 3 32 32 H 1.09000 * 109.47389 * 299.65075 * 1 2 3 33 33 H 1.09007 * 109.46730 * 59.64797 * 1 2 3 34 34 H 1.09004 * 110.30760 * 358.33656 * 4 2 1 35 35 H 1.09004 * 110.31301 * 120.40904 * 4 2 1 36 36 H 1.07994 * 120.00143 * 0.02562 * 8 7 5 37 37 H 1.08009 * 119.99215 * 180.23529 * 9 8 7 38 38 H 1.07998 * 119.99813 * 179.72566 * 10 9 8 39 39 H 1.07997 * 119.99973 * 179.97438 * 11 10 9 40 40 H 1.07997 * 120.00137 * 0.02562 * 12 7 5 41 41 H 1.08998 * 109.47280 * 177.67540 * 15 13 5 42 42 H 1.08998 * 109.46832 * 297.67693 * 15 13 5 43 43 H 1.09000 * 109.47390 * 57.67643 * 15 13 5 44 44 H 1.07997 * 120.25297 * 359.97438 * 18 17 16 45 45 H 1.08000 * 120.65339 * 180.24264 * 19 18 17 46 46 H 1.07998 * 120.42737 * 179.77035 * 20 19 18 47 47 H 0.96998 * 119.99711 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2397 5 6 2.9074 -1.9105 -0.6818 6 1 2.3238 -2.8300 -0.6371 7 6 4.1505 -2.1058 -1.5111 8 6 4.8428 -1.0083 -1.9877 9 6 5.9858 -1.1875 -2.7444 10 6 6.4304 -2.4641 -3.0333 11 6 5.7351 -3.5616 -2.5610 12 6 4.5951 -3.3824 -1.8000 13 6 3.2681 -1.4199 0.7447 14 1 3.4904 -2.2623 1.3996 15 6 4.4495 -0.4488 0.6971 16 7 2.0338 -0.7225 1.1880 17 6 2.3053 0.1570 2.2272 18 6 2.1182 -0.2577 3.5491 19 6 2.3945 0.6206 4.5852 20 6 2.8405 1.8935 4.2758 21 6 3.0037 2.2527 2.9267 22 6 3.4589 3.5489 2.5956 23 1 3.7909 4.2199 3.3740 24 6 3.4796 3.9632 1.2582 25 7 2.9476 3.2093 0.3319 26 14 4.2672 5.5932 0.7975 27 1 5.7053 5.3799 0.4945 28 1 3.5869 6.1512 -0.3987 29 1 4.1358 6.5442 1.9304 30 7 2.7316 1.3756 1.9546 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3634 0.5084 0.8931 33 1 -0.3633 0.5193 -0.8869 34 1 1.2228 -1.1369 -1.8270 35 1 2.6700 -0.0857 -1.8488 36 1 4.4932 -0.0110 -1.7654 37 1 6.5289 -0.3300 -3.1135 38 1 7.3209 -2.6040 -3.6281 39 1 6.0822 -4.5589 -2.7871 40 1 4.0514 -4.2398 -1.4316 41 1 4.6608 -0.0842 1.7023 42 1 5.3269 -0.9631 0.3052 43 1 4.2023 0.3927 0.0499 44 1 1.7643 -1.2557 3.7614 45 1 2.2604 0.3187 5.6134 46 1 3.0606 2.6018 5.0608 47 1 2.9623 3.4962 -0.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326501072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = 74.629168 kcal Electronic energy + Delta-G solvation = -28184.771194 eV Core-core repulsion = 24718.347689 eV Total energy + Delta-G solvation = -3466.423505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.34282 -38.74129 -37.17907 -33.77961 -32.91965 -31.77064 -30.85152 -30.40039 -29.64888 -27.83763 -27.34671 -25.45147 -24.55355 -22.40501 -22.02088 -21.67584 -20.79810 -19.31399 -18.81212 -17.47492 -16.68920 -15.94110 -15.40167 -14.99683 -14.68306 -14.61476 -14.35826 -14.11378 -13.89168 -13.41510 -13.22515 -13.00442 -12.70953 -12.57900 -12.21375 -12.19078 -11.78023 -11.71541 -11.56667 -11.21819 -11.15721 -11.07274 -10.99718 -10.76228 -10.72976 -10.64170 -10.54353 -10.27537 -10.13028 -10.00630 -9.75888 -9.35142 -8.73685 -8.47209 -8.36069 -8.00819 -7.56881 -7.16023 -6.50768 -4.52689 1.50159 1.55406 2.68738 2.95339 3.05838 3.08359 3.19332 3.91066 3.92081 4.54597 4.68102 4.96858 5.04168 5.12962 5.17229 5.22136 5.37678 5.54756 5.63292 5.67391 5.81904 5.83595 5.90204 6.06459 6.10434 6.14065 6.17486 6.22099 6.26548 6.29016 6.34359 6.40380 6.50687 6.58474 6.62296 6.66196 6.68001 6.73937 6.79882 6.82353 6.90568 7.04707 7.10806 7.14407 7.18190 7.40454 7.53748 7.64336 7.76481 7.86588 8.14099 8.42889 8.67635 8.97979 10.01815 10.25530 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.005126 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.707815 B = 5461.513939 C = 6607.360045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.045 3.955 3 H 0.129 0.871 4 C -0.117 4.117 5 C -0.052 4.052 6 H 0.084 0.916 7 C -0.060 4.060 8 C -0.105 4.105 9 C -0.123 4.123 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.120 4.120 13 C 0.089 3.911 14 H 0.078 0.922 15 C -0.161 4.161 16 N -0.461 5.461 17 C 0.308 3.692 18 C -0.289 4.289 19 C -0.056 4.056 20 C -0.283 4.283 21 C 0.271 3.729 22 C -0.436 4.436 23 H 0.081 0.919 24 C 0.079 3.921 25 N -0.725 5.725 26 Si 0.903 3.097 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.263 1.263 30 N -0.500 5.500 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -8.317 -7.119 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.063 4.063 3 H 0.147 0.853 4 C -0.155 4.155 5 C -0.071 4.071 6 H 0.102 0.898 7 C -0.060 4.060 8 C -0.123 4.123 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.018 4.018 14 H 0.096 0.904 15 C -0.220 4.220 16 N -0.183 5.183 17 C 0.072 3.928 18 C -0.313 4.313 19 C -0.080 4.080 20 C -0.306 4.306 21 C 0.144 3.856 22 C -0.468 4.468 23 H 0.099 0.901 24 C -0.145 4.145 25 N -0.346 5.346 26 Si 0.728 3.272 27 H -0.195 1.195 28 H -0.202 1.202 29 H -0.187 1.187 30 N -0.216 5.216 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.111 -8.398 -8.003 11.791 hybrid contribution 0.809 0.949 0.540 1.359 sum 2.920 -7.449 -7.463 10.941 Atomic orbital electron populations 1.21646 0.95555 1.00426 1.00698 1.22697 0.94840 1.01651 0.87120 0.85335 1.22621 0.98755 0.96119 0.97973 1.21143 0.92877 0.99316 0.93723 0.89791 1.19784 0.96433 0.92969 0.96845 1.21327 0.95032 0.99434 0.96529 1.21143 0.96912 0.97044 0.99009 1.21065 0.99983 0.92866 1.00926 1.21044 0.95929 0.98461 0.98896 1.21032 0.97006 0.96580 0.99173 1.22595 0.89571 0.96251 0.93383 0.90362 1.22406 0.96812 0.99599 1.03135 1.62756 1.24109 1.25223 1.06243 1.19810 0.93115 0.90186 0.89680 1.20811 1.17596 1.00624 0.92269 1.20775 0.96537 0.93794 0.96928 1.21708 1.14282 0.97141 0.97431 1.18311 0.88406 0.92269 0.86589 1.19534 1.37062 0.97322 0.92894 0.90076 1.25928 0.93923 0.98204 0.96480 1.69938 1.29084 1.34340 1.01280 0.86398 0.79884 0.82091 0.78851 1.19502 1.20242 1.18695 1.68563 1.16726 1.01182 1.35088 0.93514 0.93137 0.93382 0.91866 0.91264 0.85169 0.86408 0.86682 0.86580 0.86356 0.92525 0.93608 0.90359 0.88528 0.88613 0.88525 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.32 37.16 0.35 -1.90 16 2 C 0.04 0.86 2.40 -66.65 -0.16 0.70 16 3 H 0.13 2.91 5.29 -51.93 -0.27 2.64 16 4 C -0.12 -1.88 5.61 -25.37 -0.14 -2.02 16 5 C -0.05 -0.79 3.20 -89.82 -0.29 -1.08 16 6 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 7 C -0.06 -0.86 4.31 -104.62 -0.45 -1.31 16 8 C -0.11 -1.55 6.53 -39.58 -0.26 -1.81 16 9 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 10 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 11 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 12 C -0.12 -1.53 9.69 -39.58 -0.38 -1.92 16 13 C 0.09 1.62 3.50 -65.69 -0.23 1.39 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.16 -3.16 6.38 37.16 0.24 -2.92 16 16 N -0.46 -9.35 4.88 -154.31 -0.75 -10.11 16 17 C 0.31 7.18 4.48 -155.32 -0.70 6.49 16 18 C -0.29 -6.59 10.04 -38.86 -0.39 -6.98 16 19 C -0.06 -1.25 10.15 -39.40 -0.40 -1.65 16 20 C -0.28 -6.85 9.83 -38.66 -0.38 -7.23 16 21 C 0.27 7.09 6.52 -85.00 -0.55 6.54 16 22 C -0.44 -11.21 9.13 -37.74 -0.34 -11.55 16 23 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 24 C 0.08 1.90 5.47 -17.34 -0.09 1.81 16 25 N -0.72 -17.59 10.44 55.55 0.58 -17.02 16 26 Si 0.90 18.05 29.57 -169.99 -5.03 13.03 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 29 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 30 N -0.50 -12.52 4.65 -10.33 -0.05 -12.57 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 35 H 0.07 1.13 5.81 -51.93 -0.30 0.82 16 36 H 0.13 2.08 5.06 -52.49 -0.27 1.82 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 41 H 0.06 1.28 6.86 -51.93 -0.36 0.93 16 42 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 43 H 0.08 1.66 5.73 -51.93 -0.30 1.37 16 44 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 45 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 47 H 0.27 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -26.46 363.46 -11.99 -38.45 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.84 Total: 12.01 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -5.38 Total: -29.27 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.22 Total: -39.69 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.46 -11.99 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.077 kcal (2) G-P(sol) polarization free energy of solvation -26.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds