Wall clock time and date at job start Tue Mar 31 2020 14:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.90811 * 2 1 4 4 C 1.53992 * 109.91957 * 238.89752 * 2 1 3 5 5 C 1.54602 * 105.22770 * 239.37430 * 4 2 1 6 6 H 1.09000 * 110.71986 * 96.45085 * 5 4 2 7 7 C 1.50703 * 110.72233 * 219.73143 * 5 4 2 8 8 C 1.38233 * 119.99821 * 39.82922 * 7 5 4 9 9 C 1.38240 * 119.99210 * 179.76296 * 8 7 5 10 10 C 1.38230 * 120.00381 * 0.51099 * 9 8 7 11 11 C 1.38238 * 120.00059 * 359.74233 * 10 9 8 12 12 C 1.38234 * 119.99603 * 220.10067 * 7 5 4 13 13 C 1.55101 * 102.84471 * 338.14907 * 5 4 2 14 14 H 1.08998 * 110.82837 * 155.84701 * 13 5 4 15 15 C 1.52995 * 110.59367 * 278.87473 * 13 5 4 16 16 N 1.47895 * 109.91672 * 121.30721 * 2 1 3 17 17 C 1.38824 * 111.00335 * 265.19744 * 16 2 1 18 18 C 1.39799 * 119.58637 * 147.13922 * 17 16 2 19 19 C 1.38599 * 119.48523 * 179.77346 * 18 17 16 20 20 C 1.38382 * 118.68546 * 0.48883 * 19 18 17 21 21 C 1.40556 * 119.14721 * 359.75511 * 20 19 18 22 22 C 1.41316 * 119.78176 * 180.02562 * 21 20 19 23 23 H 1.07997 * 120.00244 * 7.21955 * 22 21 20 24 24 C 1.40031 * 119.99838 * 187.21617 * 22 21 20 25 25 N 1.30742 * 119.99959 * 7.26961 * 24 22 21 26 26 Si 1.86795 * 119.99795 * 187.26620 * 24 22 21 27 27 H 1.48508 * 109.47118 * 90.00219 * 26 24 22 28 28 H 1.48502 * 109.47374 * 209.99899 * 26 24 22 29 29 H 1.48493 * 109.47342 * 330.00223 * 26 24 22 30 30 N 1.31953 * 119.57919 * 327.40820 * 17 16 2 31 31 H 1.08998 * 109.47156 * 179.64442 * 1 2 3 32 32 H 1.09000 * 109.47389 * 299.65075 * 1 2 3 33 33 H 1.09007 * 109.46730 * 59.64797 * 1 2 3 34 34 H 1.09004 * 110.30760 * 358.33656 * 4 2 1 35 35 H 1.09004 * 110.31301 * 120.40904 * 4 2 1 36 36 H 1.07994 * 120.00143 * 0.02562 * 8 7 5 37 37 H 1.08009 * 119.99215 * 180.23529 * 9 8 7 38 38 H 1.07998 * 119.99813 * 179.72566 * 10 9 8 39 39 H 1.07997 * 119.99973 * 179.97438 * 11 10 9 40 40 H 1.07997 * 120.00137 * 0.02562 * 12 7 5 41 41 H 1.08998 * 109.47280 * 177.67540 * 15 13 5 42 42 H 1.08998 * 109.46832 * 297.67693 * 15 13 5 43 43 H 1.09000 * 109.47390 * 57.67643 * 15 13 5 44 44 H 1.07997 * 120.25297 * 359.97438 * 18 17 16 45 45 H 1.08000 * 120.65339 * 180.24264 * 19 18 17 46 46 H 1.07998 * 120.42737 * 179.77035 * 20 19 18 47 47 H 0.96998 * 119.99711 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2397 5 6 2.9074 -1.9105 -0.6818 6 1 2.3238 -2.8300 -0.6371 7 6 4.1505 -2.1058 -1.5111 8 6 4.8428 -1.0083 -1.9877 9 6 5.9858 -1.1875 -2.7444 10 6 6.4304 -2.4641 -3.0333 11 6 5.7351 -3.5616 -2.5610 12 6 4.5951 -3.3824 -1.8000 13 6 3.2681 -1.4199 0.7447 14 1 3.4904 -2.2623 1.3996 15 6 4.4495 -0.4488 0.6971 16 7 2.0338 -0.7225 1.1880 17 6 2.3053 0.1570 2.2272 18 6 2.1182 -0.2577 3.5491 19 6 2.3945 0.6206 4.5852 20 6 2.8405 1.8935 4.2758 21 6 3.0037 2.2527 2.9267 22 6 3.4589 3.5489 2.5956 23 1 3.7909 4.2199 3.3740 24 6 3.4796 3.9632 1.2582 25 7 2.9476 3.2093 0.3319 26 14 4.2672 5.5932 0.7975 27 1 5.7053 5.3799 0.4945 28 1 3.5869 6.1512 -0.3987 29 1 4.1358 6.5442 1.9304 30 7 2.7316 1.3756 1.9546 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3634 0.5084 0.8931 33 1 -0.3633 0.5193 -0.8869 34 1 1.2228 -1.1369 -1.8270 35 1 2.6700 -0.0857 -1.8488 36 1 4.4932 -0.0110 -1.7654 37 1 6.5289 -0.3300 -3.1135 38 1 7.3209 -2.6040 -3.6281 39 1 6.0822 -4.5589 -2.7871 40 1 4.0514 -4.2398 -1.4316 41 1 4.6608 -0.0842 1.7023 42 1 5.3269 -0.9631 0.3052 43 1 4.2023 0.3927 0.0499 44 1 1.7643 -1.2557 3.7614 45 1 2.2604 0.3187 5.6134 46 1 3.0606 2.6018 5.0608 47 1 2.9623 3.4962 -0.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326501072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:29 Heat of formation + Delta-G solvation = 64.319312 kcal Electronic energy + Delta-G solvation = -28185.218263 eV Core-core repulsion = 24718.347689 eV Total energy + Delta-G solvation = -3466.870574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.76054 -40.09444 -38.70997 -35.55422 -34.31800 -33.31478 -32.23235 -31.84713 -31.12949 -29.30614 -28.88756 -27.28383 -25.88826 -23.70974 -23.41211 -23.14973 -22.37865 -20.61942 -20.38449 -19.31249 -17.87832 -17.45441 -16.69258 -16.50644 -16.31376 -16.09845 -15.82955 -15.72887 -15.12564 -14.99184 -14.46811 -14.32768 -14.11813 -13.91173 -13.80535 -13.66714 -13.26341 -13.11395 -13.05475 -12.88124 -12.78731 -12.62710 -12.41699 -12.39281 -12.30794 -12.02403 -11.79144 -11.78021 -11.70393 -11.42645 -11.19422 -11.14930 -10.16885 -9.82282 -9.72407 -9.49254 -9.40595 -8.92112 -8.32091 -6.45511 0.49560 0.56968 0.87813 1.17235 1.39351 1.49934 1.51820 2.21682 2.81321 2.91716 3.07244 3.73214 3.76749 3.88152 3.96848 4.17114 4.20796 4.26427 4.32085 4.35193 4.40845 4.46876 4.53406 4.61781 4.67669 4.70701 4.79066 4.83191 4.84195 4.87916 4.93656 4.95793 5.09493 5.11031 5.19473 5.20042 5.23719 5.25641 5.29133 5.39228 5.49793 5.64934 5.69010 5.73469 5.76828 5.83603 5.91449 6.02701 6.09854 6.19152 6.27025 6.60738 6.80287 7.11219 8.16146 8.44261 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.005126 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.707815 B = 5461.513939 C = 6607.360045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.108 4.108 5 C -0.036 4.036 6 H 0.104 0.896 7 C -0.075 4.075 8 C -0.123 4.123 9 C -0.135 4.135 10 C -0.128 4.128 11 C -0.123 4.123 12 C -0.121 4.121 13 C 0.087 3.913 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.460 5.460 17 C 0.298 3.702 18 C -0.300 4.300 19 C -0.052 4.052 20 C -0.308 4.308 21 C 0.238 3.762 22 C -0.471 4.471 23 H 0.080 0.920 24 C 0.039 3.961 25 N -0.744 5.744 26 Si 0.975 3.025 27 H -0.268 1.268 28 H -0.268 1.268 29 H -0.260 1.260 30 N -0.509 5.509 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.016 0.984 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.103 0.897 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -10.360 -8.706 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.069 4.069 3 H 0.112 0.888 4 C -0.146 4.146 5 C -0.055 4.055 6 H 0.122 0.878 7 C -0.075 4.075 8 C -0.141 4.141 9 C -0.153 4.153 10 C -0.146 4.146 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.020 4.020 14 H 0.102 0.898 15 C -0.195 4.195 16 N -0.181 5.181 17 C 0.062 3.938 18 C -0.324 4.324 19 C -0.077 4.077 20 C -0.331 4.331 21 C 0.111 3.889 22 C -0.502 4.502 23 H 0.098 0.902 24 C -0.183 4.183 25 N -0.365 5.365 26 Si 0.797 3.203 27 H -0.193 1.193 28 H -0.192 1.192 29 H -0.184 1.184 30 N -0.226 5.226 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.122 0.878 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.636 -10.455 -9.583 14.425 hybrid contribution 0.659 1.496 1.018 1.926 sum 3.295 -8.959 -8.565 12.825 Atomic orbital electron populations 1.21585 0.94526 1.01396 1.00009 1.22677 0.95677 1.00343 0.88243 0.88838 1.22533 0.99452 0.96105 0.96542 1.21045 0.93553 0.99391 0.91520 0.87815 1.19706 0.96338 0.93754 0.97709 1.21224 0.96258 0.98587 0.98048 1.21335 0.96566 0.98393 0.98967 1.21417 1.00605 0.92185 1.00387 1.21434 0.95133 0.99866 0.97673 1.21299 0.97447 0.96280 0.98883 1.22686 0.88092 0.95581 0.95687 0.89825 1.22136 0.98165 0.99243 0.99937 1.62834 1.24847 1.24357 1.06112 1.20235 0.92374 0.90184 0.91008 1.21139 1.17403 1.01486 0.92352 1.21117 0.95058 0.92884 0.98609 1.21873 1.15717 0.98421 0.97063 1.18777 0.89204 0.93093 0.87828 1.19810 1.38621 0.97728 0.94056 0.90164 1.26683 0.94199 1.01597 0.95851 1.70027 1.29145 1.35705 1.01644 0.85310 0.78718 0.77663 0.78640 1.19346 1.19221 1.18435 1.68596 1.17064 1.01799 1.35099 0.91594 0.96069 0.91790 0.89661 0.91989 0.87622 0.85586 0.84041 0.83551 0.84315 0.96524 0.92334 0.92538 0.86829 0.85278 0.87847 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.32 71.98 0.67 -3.51 16 2 C 0.04 1.50 2.40 45.06 0.11 1.61 16 3 H 0.09 4.42 5.29 -2.39 -0.01 4.41 16 4 C -0.11 -3.42 5.61 31.47 0.18 -3.25 16 5 C -0.04 -1.06 3.20 -10.27 -0.03 -1.09 16 6 H 0.10 2.64 8.04 -2.39 -0.02 2.62 16 7 C -0.07 -2.03 4.31 -19.87 -0.09 -2.11 16 8 C -0.12 -3.59 6.53 22.27 0.15 -3.44 16 9 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 10 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 11 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 12 C -0.12 -2.70 9.69 22.27 0.22 -2.49 16 13 C 0.09 3.13 3.50 45.32 0.16 3.28 16 14 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 15 C -0.14 -5.54 6.38 71.98 0.46 -5.08 16 16 N -0.46 -18.79 4.88 -642.11 -3.13 -21.92 16 17 C 0.30 14.32 4.48 133.42 0.60 14.91 16 18 C -0.30 -13.79 10.04 22.73 0.23 -13.56 16 19 C -0.05 -2.35 10.15 22.39 0.23 -2.13 16 20 C -0.31 -15.47 9.83 22.87 0.22 -15.24 16 21 C 0.24 13.06 6.52 40.18 0.26 13.32 16 22 C -0.47 -25.35 9.13 23.46 0.21 -25.13 16 23 H 0.08 4.14 7.86 -2.91 -0.02 4.12 16 24 C 0.04 1.95 5.47 85.29 0.47 2.42 16 25 N -0.74 -37.68 10.44 21.84 0.23 -37.45 16 26 Si 0.98 37.97 29.57 68.60 2.03 40.00 16 27 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 28 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 29 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 30 N -0.51 -26.78 4.65 -186.58 -0.87 -27.65 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.08 2.30 7.69 -2.39 -0.02 2.28 16 35 H 0.06 2.05 5.81 -2.38 -0.01 2.04 16 36 H 0.11 3.55 5.06 -2.91 -0.01 3.54 16 37 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 2.49 8.04 -2.91 -0.02 2.47 16 41 H 0.02 0.76 6.86 -2.39 -0.02 0.75 16 42 H 0.06 2.16 6.34 -2.39 -0.02 2.14 16 43 H 0.06 2.54 5.73 -2.39 -0.01 2.52 16 44 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 45 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 46 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 47 H 0.28 12.83 8.29 -92.71 -0.77 12.06 16 Total: -1.00 -60.26 363.46 3.93 -56.33 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.96 Total: 39.90 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 4.71 Total: -49.22 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -3.77 Total: -87.01 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -60.26 3.93 -56.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.653 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds