Wall clock time and date at job start Tue Mar 31 2020 14:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.72922 * 2 1 4 4 C 1.54942 * 110.66322 * 236.90424 * 2 1 3 5 5 C 1.55024 * 102.92241 * 204.04349 * 4 2 1 6 6 H 1.09005 * 110.46244 * 263.23543 * 5 4 2 7 7 C 1.50702 * 110.36338 * 140.93495 * 5 4 2 8 8 C 1.38230 * 119.99947 * 304.23820 * 7 5 4 9 9 C 1.38234 * 120.00237 * 179.78607 * 8 7 5 10 10 C 1.38236 * 119.99546 * 0.43804 * 9 8 7 11 11 C 1.38231 * 120.00466 * 359.81415 * 10 9 8 12 12 C 1.38233 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.53996 * 104.93566 * 22.11088 * 5 4 2 14 14 H 1.08993 * 109.91815 * 120.51589 * 13 5 4 15 15 C 1.53000 * 109.91750 * 241.61652 * 13 5 4 16 16 N 1.47901 * 107.22094 * 1.06715 * 13 5 4 17 17 C 1.38824 * 111.00254 * 214.25321 * 16 13 5 18 18 C 1.39794 * 119.58296 * 282.46712 * 17 16 13 19 19 C 1.38600 * 119.49204 * 179.97438 * 18 17 16 20 20 C 1.38389 * 118.67473 * 359.97438 * 19 18 17 21 21 C 1.40559 * 119.15353 * 0.02562 * 20 19 18 22 22 C 1.41313 * 119.78312 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99432 * 153.55554 * 22 21 20 24 24 C 1.40024 * 120.00183 * 333.55986 * 22 21 20 25 25 N 1.30743 * 119.99823 * 161.14888 * 24 22 21 26 26 Si 1.86801 * 120.00172 * 341.14708 * 24 22 21 27 27 H 1.48503 * 109.47125 * 95.42276 * 26 24 22 28 28 H 1.48496 * 109.47231 * 215.42681 * 26 24 22 29 29 H 1.48499 * 109.46672 * 335.42566 * 26 24 22 30 30 N 1.31955 * 119.58187 * 102.19303 * 17 16 13 31 31 H 1.08995 * 109.46619 * 302.24142 * 1 2 3 32 32 H 1.09000 * 109.46734 * 62.24692 * 1 2 3 33 33 H 1.08997 * 109.47278 * 182.24018 * 1 2 3 34 34 H 1.08998 * 110.72964 * 322.50767 * 4 2 1 35 35 H 1.09000 * 110.72514 * 85.79629 * 4 2 1 36 36 H 1.08009 * 119.99866 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.00389 * 180.26939 * 9 8 7 38 38 H 1.08005 * 119.99683 * 179.83243 * 10 9 8 39 39 H 1.07995 * 120.00425 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.00539 * 180.02562 * 12 11 10 41 41 H 1.09006 * 109.46772 * 185.03582 * 15 13 5 42 42 H 1.08997 * 109.47540 * 305.04155 * 15 13 5 43 43 H 1.09002 * 109.46723 * 65.04234 * 15 13 5 44 44 H 1.07997 * 120.25621 * 359.97392 * 18 17 16 45 45 H 1.07999 * 120.66154 * 180.02562 * 19 18 17 46 46 H 1.08001 * 120.42223 * 180.02562 * 20 19 18 47 47 H 0.97003 * 120.00029 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4903 -1.2186 -0.7422 6 1 4.2427 -0.5235 -1.1148 7 6 3.7966 -2.6198 -1.2046 8 6 2.9447 -3.6577 -0.8764 9 6 3.2233 -4.9423 -1.3043 10 6 4.3587 -5.1905 -2.0526 11 6 5.2135 -4.1535 -2.3764 12 6 4.9325 -2.8682 -1.9523 13 6 3.4279 -1.1649 0.7955 14 1 3.6485 -2.1482 1.2107 15 6 4.4336 -0.1393 1.3225 16 7 2.0543 -0.7590 1.1642 17 6 2.0579 0.0261 2.3091 18 6 2.2124 -0.5785 3.5600 19 6 2.2162 0.2072 4.7018 20 6 2.0662 1.5763 4.5663 21 6 1.9149 2.1246 3.2810 22 6 1.7603 3.5209 3.1272 23 1 2.0630 3.9996 2.2077 24 6 1.2146 4.2836 4.1671 25 7 1.4006 5.5774 4.1959 26 14 0.2211 3.4526 5.5131 27 1 1.1023 3.1657 6.6735 28 1 -0.8826 4.3500 5.9394 29 1 -0.3463 2.1813 4.9962 30 7 1.9208 1.3342 2.2024 31 1 -0.3632 0.5482 0.8692 32 1 -0.3633 0.4786 -0.9095 33 1 -0.3634 -1.0268 0.0402 34 1 1.4561 -1.6644 -1.4173 35 1 2.1430 -0.1513 -2.0942 36 1 2.0596 -3.4645 -0.2883 37 1 2.5554 -5.7525 -1.0516 38 1 4.5779 -6.1946 -2.3846 39 1 6.1004 -4.3473 -2.9614 40 1 5.6001 -2.0578 -2.2055 41 1 4.4476 -0.1708 2.4120 42 1 5.4267 -0.3742 0.9394 43 1 4.1430 0.8577 0.9915 44 1 2.3279 -1.6495 3.6362 45 1 2.3346 -0.2400 5.6777 46 1 2.0655 2.2152 5.4371 47 1 1.0223 6.1058 4.9161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326501081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:34 Heat of formation + Delta-G solvation = 62.924281 kcal Electronic energy + Delta-G solvation = -27386.165167 eV Core-core repulsion = 23919.234100 eV Total energy + Delta-G solvation = -3466.931067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.51022 -39.04092 -37.51542 -33.99542 -33.04049 -32.27931 -31.05705 -30.90932 -30.24369 -28.31770 -27.63548 -25.51638 -24.21760 -22.87950 -22.33253 -21.64685 -21.12757 -19.69808 -19.34396 -17.46793 -16.92894 -16.13156 -15.73945 -15.54444 -15.06419 -14.82917 -14.76505 -14.37662 -13.78176 -13.43523 -13.36051 -13.10048 -12.97034 -12.72539 -12.66054 -12.54526 -12.11800 -12.08504 -11.86378 -11.72009 -11.53627 -11.26519 -11.12591 -11.07491 -10.94024 -10.78408 -10.55208 -10.46455 -10.34145 -10.19268 -9.99350 -9.41139 -8.94320 -8.78990 -8.62848 -8.47125 -7.90169 -7.28193 -7.05580 -4.67457 1.32410 1.37882 2.42042 2.56594 3.04090 3.16972 3.25415 3.74121 3.89848 4.23608 4.44672 4.65302 4.77582 4.92563 4.95039 5.01677 5.12927 5.33303 5.43662 5.45623 5.53466 5.55651 5.65685 5.74316 5.77896 5.84320 5.92307 5.97841 5.99772 6.04664 6.06990 6.14522 6.20424 6.31413 6.36930 6.40071 6.44381 6.46651 6.49331 6.59122 6.69374 6.70663 6.77046 6.79025 6.98689 7.08698 7.13275 7.38273 7.48996 7.58631 8.05974 8.25684 8.44855 8.69562 9.57765 9.96243 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.003281 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.048775 B = 8532.369336 C = 8680.779591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.069 3.931 3 H 0.087 0.913 4 C -0.113 4.113 5 C -0.058 4.058 6 H 0.084 0.916 7 C -0.063 4.063 8 C -0.107 4.107 9 C -0.121 4.121 10 C -0.130 4.130 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.089 3.911 14 H 0.085 0.915 15 C -0.175 4.175 16 N -0.461 5.461 17 C 0.333 3.667 18 C -0.290 4.290 19 C -0.038 4.038 20 C -0.298 4.298 21 C 0.273 3.727 22 C -0.420 4.420 23 H 0.096 0.904 24 C 0.089 3.911 25 N -0.796 5.796 26 Si 0.916 3.084 27 H -0.270 1.270 28 H -0.291 1.291 29 H -0.247 1.247 30 N -0.570 5.570 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -14.890 -9.088 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.039 4.039 3 H 0.105 0.895 4 C -0.151 4.151 5 C -0.077 4.077 6 H 0.103 0.897 7 C -0.064 4.064 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.137 4.137 13 C -0.018 4.018 14 H 0.103 0.897 15 C -0.233 4.233 16 N -0.182 5.182 17 C 0.097 3.903 18 C -0.314 4.314 19 C -0.062 4.062 20 C -0.320 4.320 21 C 0.147 3.853 22 C -0.452 4.452 23 H 0.114 0.886 24 C -0.133 4.133 25 N -0.420 5.420 26 Si 0.743 3.257 27 H -0.196 1.196 28 H -0.218 1.218 29 H -0.170 1.170 30 N -0.288 5.288 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.196 -14.654 -9.700 17.862 hybrid contribution 0.203 0.054 1.532 1.546 sum 3.399 -14.601 -8.168 17.072 Atomic orbital electron populations 1.21546 0.94181 1.01220 1.01608 1.22641 0.95820 0.97792 0.87604 0.89540 1.22802 0.94287 1.00222 0.97806 1.21227 0.98567 0.92955 0.94992 0.89736 1.19832 0.94560 0.94978 0.96993 1.21152 0.99778 0.92191 0.99410 1.21149 0.97416 0.96877 0.98450 1.21101 0.95328 0.98861 0.99490 1.21080 0.99531 0.93012 1.00448 1.21085 0.97046 0.96900 0.98667 1.22374 0.87385 0.99101 0.92905 0.89687 1.22454 0.98359 1.00079 1.02427 1.62493 1.17386 1.35994 1.02327 1.19525 0.92342 0.88651 0.89770 1.20766 1.20045 0.98766 0.91816 1.20847 0.94886 0.93599 0.96909 1.21785 1.16575 0.95143 0.98521 1.18301 0.87721 0.92974 0.86311 1.19179 1.34825 0.89078 1.02071 0.88591 1.26111 0.94618 0.94690 0.97879 1.69629 1.34129 1.07155 1.31132 0.86266 0.79075 0.80244 0.80068 1.19646 1.21815 1.17019 1.68100 1.23970 1.03172 1.33541 0.92117 0.92843 0.92990 0.90683 0.91142 0.85299 0.86296 0.86539 0.86429 0.86293 0.91544 0.92852 0.91397 0.87840 0.87880 0.87618 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.44 37.16 0.35 -1.73 16 2 C 0.07 1.16 2.54 -65.78 -0.17 0.99 16 3 H 0.09 1.69 6.95 -51.93 -0.36 1.33 16 4 C -0.11 -1.51 5.94 -24.64 -0.15 -1.66 16 5 C -0.06 -0.77 2.88 -90.18 -0.26 -1.03 16 6 H 0.08 1.08 7.47 -51.93 -0.39 0.69 16 7 C -0.06 -0.77 4.73 -104.62 -0.49 -1.26 16 8 C -0.11 -1.27 8.17 -39.59 -0.32 -1.60 16 9 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 10 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 12 C -0.12 -1.30 9.68 -39.58 -0.38 -1.69 16 13 C 0.09 1.39 3.06 -66.64 -0.20 1.19 16 14 H 0.09 1.31 7.35 -51.93 -0.38 0.93 16 15 C -0.17 -2.93 7.89 37.16 0.29 -2.64 16 16 N -0.46 -8.23 4.95 -154.40 -0.76 -8.99 16 17 C 0.33 7.09 3.91 -155.32 -0.61 6.49 16 18 C -0.29 -6.07 9.01 -38.87 -0.35 -6.42 16 19 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 20 C -0.30 -7.18 7.16 -38.65 -0.28 -7.45 16 21 C 0.27 6.99 6.03 -85.00 -0.51 6.48 16 22 C -0.42 -11.36 9.80 -37.74 -0.37 -11.73 16 23 H 0.10 2.77 8.06 -52.49 -0.42 2.34 16 24 C 0.09 2.29 5.41 -17.35 -0.09 2.19 16 25 N -0.80 -20.73 13.92 55.55 0.77 -19.96 16 26 Si 0.92 20.67 24.43 -169.99 -4.15 16.52 16 27 H -0.27 -5.87 6.66 56.52 0.38 -5.49 16 28 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.25 -5.82 6.79 56.52 0.38 -5.43 16 30 N -0.57 -13.63 7.85 -10.33 -0.08 -13.71 16 31 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.96 6.78 -51.93 -0.35 0.61 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.13 1.58 7.70 -52.48 -0.40 1.18 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.14 7.97 -52.49 -0.42 0.72 16 41 H 0.07 1.24 6.65 -51.93 -0.35 0.90 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.29 7.57 -51.93 -0.39 0.90 16 44 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 45 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.11 2.52 4.29 -52.49 -0.23 2.29 16 47 H 0.29 6.75 8.29 -40.82 -0.34 6.41 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -27.44 367.67 -10.92 -38.36 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.09 Total: 8.26 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -5.14 Total: -26.01 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.07 Total: -42.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.15 Total: 16.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.44 -10.92 -38.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.280 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds