Wall clock time and date at job start Tue Mar 31 2020 14:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.72922 * 2 1 4 4 C 1.54942 * 110.66322 * 236.90424 * 2 1 3 5 5 C 1.55024 * 102.92241 * 204.04349 * 4 2 1 6 6 H 1.09005 * 110.46244 * 263.23543 * 5 4 2 7 7 C 1.50702 * 110.36338 * 140.93495 * 5 4 2 8 8 C 1.38230 * 119.99947 * 304.23820 * 7 5 4 9 9 C 1.38234 * 120.00237 * 179.78607 * 8 7 5 10 10 C 1.38236 * 119.99546 * 0.43804 * 9 8 7 11 11 C 1.38231 * 120.00466 * 359.81415 * 10 9 8 12 12 C 1.38233 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.53996 * 104.93566 * 22.11088 * 5 4 2 14 14 H 1.08993 * 109.91815 * 120.51589 * 13 5 4 15 15 C 1.53000 * 109.91750 * 241.61652 * 13 5 4 16 16 N 1.47901 * 107.22094 * 1.06715 * 13 5 4 17 17 C 1.38824 * 111.00254 * 214.25321 * 16 13 5 18 18 C 1.39794 * 119.58296 * 282.46712 * 17 16 13 19 19 C 1.38600 * 119.49204 * 179.97438 * 18 17 16 20 20 C 1.38389 * 118.67473 * 359.97438 * 19 18 17 21 21 C 1.40559 * 119.15353 * 0.02562 * 20 19 18 22 22 C 1.41313 * 119.78312 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99432 * 153.55554 * 22 21 20 24 24 C 1.40024 * 120.00183 * 333.55986 * 22 21 20 25 25 N 1.30743 * 119.99823 * 161.14888 * 24 22 21 26 26 Si 1.86801 * 120.00172 * 341.14708 * 24 22 21 27 27 H 1.48503 * 109.47125 * 95.42276 * 26 24 22 28 28 H 1.48496 * 109.47231 * 215.42681 * 26 24 22 29 29 H 1.48499 * 109.46672 * 335.42566 * 26 24 22 30 30 N 1.31955 * 119.58187 * 102.19303 * 17 16 13 31 31 H 1.08995 * 109.46619 * 302.24142 * 1 2 3 32 32 H 1.09000 * 109.46734 * 62.24692 * 1 2 3 33 33 H 1.08997 * 109.47278 * 182.24018 * 1 2 3 34 34 H 1.08998 * 110.72964 * 322.50767 * 4 2 1 35 35 H 1.09000 * 110.72514 * 85.79629 * 4 2 1 36 36 H 1.08009 * 119.99866 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.00389 * 180.26939 * 9 8 7 38 38 H 1.08005 * 119.99683 * 179.83243 * 10 9 8 39 39 H 1.07995 * 120.00425 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.00539 * 180.02562 * 12 11 10 41 41 H 1.09006 * 109.46772 * 185.03582 * 15 13 5 42 42 H 1.08997 * 109.47540 * 305.04155 * 15 13 5 43 43 H 1.09002 * 109.46723 * 65.04234 * 15 13 5 44 44 H 1.07997 * 120.25621 * 359.97392 * 18 17 16 45 45 H 1.07999 * 120.66154 * 180.02562 * 19 18 17 46 46 H 1.08001 * 120.42223 * 180.02562 * 20 19 18 47 47 H 0.97003 * 120.00029 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4903 -1.2186 -0.7422 6 1 4.2427 -0.5235 -1.1148 7 6 3.7966 -2.6198 -1.2046 8 6 2.9447 -3.6577 -0.8764 9 6 3.2233 -4.9423 -1.3043 10 6 4.3587 -5.1905 -2.0526 11 6 5.2135 -4.1535 -2.3764 12 6 4.9325 -2.8682 -1.9523 13 6 3.4279 -1.1649 0.7955 14 1 3.6485 -2.1482 1.2107 15 6 4.4336 -0.1393 1.3225 16 7 2.0543 -0.7590 1.1642 17 6 2.0579 0.0261 2.3091 18 6 2.2124 -0.5785 3.5600 19 6 2.2162 0.2072 4.7018 20 6 2.0662 1.5763 4.5663 21 6 1.9149 2.1246 3.2810 22 6 1.7603 3.5209 3.1272 23 1 2.0630 3.9996 2.2077 24 6 1.2146 4.2836 4.1671 25 7 1.4006 5.5774 4.1959 26 14 0.2211 3.4526 5.5131 27 1 1.1023 3.1657 6.6735 28 1 -0.8826 4.3500 5.9394 29 1 -0.3463 2.1813 4.9962 30 7 1.9208 1.3342 2.2024 31 1 -0.3632 0.5482 0.8692 32 1 -0.3633 0.4786 -0.9095 33 1 -0.3634 -1.0268 0.0402 34 1 1.4561 -1.6644 -1.4173 35 1 2.1430 -0.1513 -2.0942 36 1 2.0596 -3.4645 -0.2883 37 1 2.5554 -5.7525 -1.0516 38 1 4.5779 -6.1946 -2.3846 39 1 6.1004 -4.3473 -2.9614 40 1 5.6001 -2.0578 -2.2055 41 1 4.4476 -0.1708 2.4120 42 1 5.4267 -0.3742 0.9394 43 1 4.1430 0.8577 0.9915 44 1 2.3279 -1.6495 3.6362 45 1 2.3346 -0.2400 5.6777 46 1 2.0655 2.2152 5.4371 47 1 1.0223 6.1058 4.9161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326501081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:33 Heat of formation + Delta-G solvation = 49.375157 kcal Electronic energy + Delta-G solvation = -27386.752701 eV Core-core repulsion = 23919.234100 eV Total energy + Delta-G solvation = -3467.518601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86755 -40.21747 -38.93062 -35.78029 -34.36841 -33.71074 -32.81241 -31.72480 -31.61309 -29.76853 -28.91714 -27.35478 -25.35769 -24.12434 -23.51339 -23.21708 -22.41729 -20.95857 -20.76336 -19.26362 -17.84130 -17.78499 -17.34330 -16.79546 -16.57285 -16.18272 -16.04496 -15.71872 -14.92193 -14.85161 -14.80557 -14.27011 -14.20399 -14.13481 -13.95646 -13.87206 -13.65071 -13.51425 -13.30027 -13.09818 -12.94438 -12.82391 -12.61053 -12.33676 -12.32321 -12.02514 -11.95493 -11.86424 -11.80359 -11.50473 -11.40585 -11.24432 -10.45741 -10.24317 -9.72891 -9.69350 -9.49516 -9.00055 -8.98572 -6.68585 0.50318 0.59543 0.62061 0.79511 1.21351 1.37577 1.43769 2.06207 2.47441 2.89132 2.92733 3.49199 3.60466 3.69199 3.76122 4.08531 4.13171 4.18471 4.23821 4.34854 4.35982 4.38349 4.42402 4.42918 4.53060 4.60553 4.65202 4.67994 4.71577 4.74823 4.78764 4.87175 4.89951 4.97143 5.07382 5.11543 5.18477 5.22239 5.26829 5.30388 5.33329 5.37797 5.51628 5.67714 5.68232 5.71919 5.74105 5.81601 5.92296 6.15389 6.21121 6.33515 6.52027 6.80280 7.74468 8.09173 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.003281 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.048775 B = 8532.369336 C = 8680.779591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.065 3.935 3 H 0.052 0.948 4 C -0.101 4.101 5 C -0.048 4.048 6 H 0.088 0.912 7 C -0.076 4.076 8 C -0.119 4.119 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.127 4.127 13 C 0.092 3.908 14 H 0.094 0.906 15 C -0.167 4.167 16 N -0.458 5.458 17 C 0.330 3.670 18 C -0.281 4.281 19 C -0.035 4.035 20 C -0.318 4.318 21 C 0.260 3.740 22 C -0.459 4.459 23 H 0.054 0.946 24 C 0.056 3.944 25 N -0.833 5.833 26 Si 0.973 3.027 27 H -0.252 1.252 28 H -0.274 1.274 29 H -0.264 1.264 30 N -0.587 5.587 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.108 0.892 47 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -18.704 -9.408 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.043 4.043 3 H 0.070 0.930 4 C -0.139 4.139 5 C -0.067 4.067 6 H 0.106 0.894 7 C -0.076 4.076 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.145 4.145 13 C -0.014 4.014 14 H 0.112 0.888 15 C -0.225 4.225 16 N -0.179 5.179 17 C 0.094 3.906 18 C -0.305 4.305 19 C -0.059 4.059 20 C -0.340 4.340 21 C 0.133 3.867 22 C -0.491 4.491 23 H 0.073 0.927 24 C -0.162 4.162 25 N -0.459 5.459 26 Si 0.797 3.203 27 H -0.177 1.177 28 H -0.201 1.201 29 H -0.188 1.188 30 N -0.305 5.305 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.149 0.851 45 H 0.160 0.840 46 H 0.125 0.875 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.692 -18.474 -10.031 21.343 hybrid contribution 0.142 1.018 1.473 1.796 sum 3.835 -17.456 -8.557 19.816 Atomic orbital electron populations 1.21501 0.93848 1.01716 1.00878 1.22640 0.96127 0.96542 0.88947 0.93027 1.22740 0.94449 1.00232 0.96484 1.21104 0.98430 0.94319 0.92863 0.89382 1.19702 0.95580 0.94001 0.98346 1.21165 0.99694 0.92919 0.99973 1.21396 0.98041 0.96761 0.98247 1.21452 0.94690 1.00073 0.98544 1.21400 1.00274 0.92530 1.00125 1.21278 0.96789 0.97936 0.98470 1.22457 0.85467 0.98592 0.94927 0.88849 1.22363 1.00315 0.98883 1.00934 1.62562 1.18863 1.34740 1.01763 1.19947 0.91066 0.88014 0.91552 1.21198 1.17659 1.00149 0.91453 1.21274 0.93175 0.92539 0.98931 1.21855 1.17895 0.96586 0.97687 1.18386 0.87905 0.92671 0.87703 1.19106 1.38147 0.90369 1.01527 0.92748 1.26742 0.94877 0.95085 0.99453 1.69642 1.35503 1.08131 1.32593 0.85403 0.78229 0.78629 0.78036 1.17685 1.20088 1.18842 1.68120 1.24311 1.04573 1.33511 0.95840 0.90897 0.91431 0.89461 0.89737 0.86120 0.84635 0.84137 0.84187 0.85292 0.93714 0.90207 0.94407 0.85125 0.83981 0.87481 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 9.44 71.98 0.68 -3.29 16 2 C 0.07 2.20 2.54 45.26 0.11 2.32 16 3 H 0.05 2.13 6.95 -2.39 -0.02 2.11 16 4 C -0.10 -2.56 5.94 31.95 0.19 -2.37 16 5 C -0.05 -1.19 2.88 -10.51 -0.03 -1.22 16 6 H 0.09 2.11 7.47 -2.38 -0.02 2.10 16 7 C -0.08 -1.65 4.73 -19.87 -0.09 -1.75 16 8 C -0.12 -2.53 8.17 22.27 0.18 -2.35 16 9 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 10 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 11 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 12 C -0.13 -2.41 9.68 22.27 0.22 -2.20 16 13 C 0.09 2.75 3.06 45.06 0.14 2.89 16 14 H 0.09 2.69 7.35 -2.39 -0.02 2.67 16 15 C -0.17 -5.57 7.89 71.98 0.57 -5.00 16 16 N -0.46 -16.13 4.95 -642.40 -3.18 -19.31 16 17 C 0.33 14.10 3.91 133.42 0.52 14.62 16 18 C -0.28 -11.31 9.01 22.73 0.20 -11.10 16 19 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 20 C -0.32 -15.37 7.16 22.87 0.16 -15.20 16 21 C 0.26 13.93 6.03 40.18 0.24 14.17 16 22 C -0.46 -26.64 9.80 23.46 0.23 -26.41 16 23 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 24 C 0.06 3.03 5.41 85.29 0.46 3.50 16 25 N -0.83 -45.33 13.92 21.84 0.30 -45.02 16 26 Si 0.97 43.25 24.43 68.60 1.68 44.92 16 27 H -0.25 -10.34 6.66 99.48 0.66 -9.68 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.26 -12.36 6.79 99.48 0.68 -11.68 16 30 N -0.59 -29.32 7.85 -186.59 -1.47 -30.79 16 31 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.03 6.78 -2.39 -0.02 2.02 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.12 2.70 7.70 -2.91 -0.02 2.68 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.13 2.12 7.97 -2.91 -0.02 2.09 16 41 H 0.04 1.66 6.65 -2.38 -0.02 1.64 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 44 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 46 H 0.11 5.07 4.29 -2.91 -0.01 5.05 16 47 H 0.30 14.43 8.29 -92.71 -0.77 13.66 16 Total: -1.00 -63.35 367.67 2.90 -60.45 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.88 Total: 30.00 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.68 Total: -40.25 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.34 Total: -95.12 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.68 Total: 44.92 kcal Total: -63.35 2.90 -60.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.828 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds