Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.07061 * 2 1 4 4 C 1.53999 * 109.91895 * 238.79503 * 2 1 3 5 5 C 1.54593 * 105.13989 * 239.42717 * 4 2 1 6 6 H 1.09002 * 110.72603 * 96.57747 * 5 4 2 7 7 C 1.50703 * 110.72086 * 219.68429 * 5 4 2 8 8 C 1.38225 * 120.00267 * 58.26864 * 7 5 4 9 9 C 1.38241 * 120.00300 * 180.36713 * 8 7 5 10 10 C 1.38233 * 119.99605 * 359.84222 * 9 8 7 11 11 C 1.38239 * 120.00170 * 0.13394 * 10 9 8 12 12 C 1.38227 * 119.99976 * 359.95202 * 11 10 9 13 13 C 1.54936 * 102.92077 * 338.03781 * 5 4 2 14 14 H 1.08998 * 110.66999 * 278.98343 * 13 5 4 15 15 C 1.53008 * 110.66827 * 155.85248 * 13 5 4 16 16 N 1.47902 * 109.91860 * 121.20739 * 2 1 3 17 17 C 1.38823 * 110.99831 * 265.19839 * 16 2 1 18 18 C 1.39796 * 119.58348 * 300.12234 * 17 16 2 19 19 C 1.38601 * 119.49160 * 180.02562 * 18 17 16 20 20 C 1.38382 * 118.68038 * 359.97438 * 19 18 17 21 21 C 1.40555 * 119.15004 * 0.02562 * 20 19 18 22 22 C 1.41311 * 119.78493 * 180.02562 * 21 20 19 23 23 H 1.08007 * 120.00147 * 353.78154 * 22 21 20 24 24 C 1.40028 * 120.00427 * 173.78320 * 22 21 20 25 25 N 1.30747 * 119.99659 * 6.35812 * 24 22 21 26 26 Si 1.86793 * 120.00459 * 186.35543 * 24 22 21 27 27 H 1.48501 * 109.47021 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47297 * 120.00070 * 26 24 22 29 29 H 1.48501 * 109.47442 * 240.00431 * 26 24 22 30 30 N 1.31958 * 119.58698 * 119.85155 * 17 16 2 31 31 H 1.08995 * 109.47556 * 179.75141 * 1 2 3 32 32 H 1.09005 * 109.47361 * 299.75655 * 1 2 3 33 33 H 1.09004 * 109.46936 * 59.74901 * 1 2 3 34 34 H 1.08997 * 110.31203 * 120.50853 * 4 2 1 35 35 H 1.08998 * 110.38966 * 358.38038 * 4 2 1 36 36 H 1.08002 * 120.00345 * 0.28236 * 8 7 5 37 37 H 1.07993 * 120.00203 * 179.97438 * 9 8 7 38 38 H 1.08004 * 120.00010 * 180.11513 * 10 9 8 39 39 H 1.08002 * 120.00038 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.00194 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46855 * 59.99460 * 15 13 5 42 42 H 1.08993 * 109.47433 * 180.02562 * 15 13 5 43 43 H 1.09005 * 109.46908 * 299.99942 * 15 13 5 44 44 H 1.08002 * 120.25773 * 0.02562 * 18 17 16 45 45 H 1.07998 * 120.65787 * 179.97438 * 19 18 17 46 46 H 1.07999 * 120.42526 * 179.97438 * 20 19 18 47 47 H 0.96993 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2384 5 6 2.9057 -1.9118 -0.6762 6 1 2.3221 -2.8313 -0.6319 7 6 4.1492 -2.1109 -1.5041 8 6 5.0470 -1.0721 -1.6637 9 6 6.1838 -1.2525 -2.4294 10 6 6.4243 -2.4727 -3.0327 11 6 5.5266 -3.5118 -2.8726 12 6 4.3891 -3.3309 -2.1085 13 6 3.2680 -1.4186 0.7472 14 1 4.1096 -0.7268 0.7121 15 6 3.5778 -2.6020 1.6662 16 7 2.0338 -0.7205 1.1893 17 6 2.3053 0.1609 2.2269 18 6 3.2486 1.1759 2.0413 19 6 3.5185 2.0545 3.0787 20 6 2.8401 1.8985 4.2747 21 6 1.9031 0.8583 4.3997 22 6 1.2023 0.6871 5.6148 23 1 1.4577 1.2883 6.4749 24 6 0.1766 -0.2620 5.7038 25 7 -0.0505 -1.0747 4.7051 26 14 -0.8672 -0.3671 7.2493 27 1 -0.4118 0.6558 8.2247 28 1 -2.2903 -0.1214 6.9032 29 1 -0.7299 -1.7189 7.8485 30 7 1.6658 0.0336 3.3741 31 1 -0.3634 -1.0276 -0.0045 32 1 -0.3634 0.5101 0.8922 33 1 -0.3633 0.5177 -0.8878 34 1 2.6714 -0.0896 -1.8477 35 1 1.2238 -1.1401 -1.8264 36 1 4.8597 -0.1191 -1.1914 37 1 6.8850 -0.4408 -2.5544 38 1 7.3133 -2.6143 -3.6293 39 1 5.7143 -4.4651 -3.3443 40 1 3.6875 -4.1425 -1.9838 41 1 4.4199 -3.1644 1.2630 42 1 3.8292 -2.2336 2.6607 43 1 2.7044 -3.2511 1.7297 44 1 3.7630 1.2746 1.0969 45 1 4.2439 2.8451 2.9561 46 1 3.0287 2.5670 5.1017 47 1 -0.7607 -1.7324 4.7668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326501085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = 67.721457 kcal Electronic energy + Delta-G solvation = -27386.664334 eV Core-core repulsion = 23919.941288 eV Total energy + Delta-G solvation = -3466.723046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.24636 -38.79626 -37.28800 -33.78704 -32.93870 -32.09793 -30.91788 -30.49875 -29.99614 -28.01940 -27.63942 -25.32512 -24.01151 -22.72708 -22.06810 -21.49518 -21.15148 -19.56290 -19.28707 -17.42240 -17.05511 -16.03876 -15.36389 -15.01021 -14.79139 -14.45660 -14.34593 -14.25870 -13.93503 -13.36996 -13.31058 -13.26165 -12.98498 -12.71695 -12.42830 -12.14514 -11.99231 -11.81555 -11.61861 -11.39151 -11.27875 -11.15644 -11.02895 -10.98985 -10.75473 -10.69461 -10.60733 -10.48371 -10.37522 -10.11411 -9.96401 -9.31735 -8.92528 -8.62001 -8.21521 -8.15426 -7.49114 -7.23894 -6.32829 -4.50573 1.35486 1.39661 2.65650 3.00644 3.10667 3.14324 3.19110 3.77059 3.96231 4.30521 4.68396 4.78783 4.87742 4.98502 5.01349 5.10418 5.16581 5.37168 5.46132 5.51668 5.59571 5.73700 5.83137 5.86571 5.94971 5.99266 6.03147 6.06168 6.06838 6.13536 6.15765 6.24242 6.28885 6.41139 6.46963 6.49879 6.52042 6.62537 6.70768 6.74074 6.80223 6.81411 6.89663 6.92615 7.00589 7.23091 7.54680 7.56793 7.67519 7.77641 8.21912 8.33003 8.72462 8.95985 10.15845 10.33820 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.003444 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.073252 B = 8127.629978 C = 8420.322822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.074 3.926 3 H 0.055 0.945 4 C -0.116 4.116 5 C -0.052 4.052 6 H 0.091 0.909 7 C -0.060 4.060 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.130 4.130 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.087 3.913 14 H 0.057 0.943 15 C -0.129 4.129 16 N -0.458 5.458 17 C 0.319 3.681 18 C -0.348 4.348 19 C -0.049 4.049 20 C -0.286 4.286 21 C 0.262 3.738 22 C -0.429 4.429 23 H 0.084 0.916 24 C 0.068 3.932 25 N -0.699 5.699 26 Si 0.904 3.096 27 H -0.261 1.261 28 H -0.273 1.273 29 H -0.273 1.273 30 N -0.453 5.453 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -3.584 -13.101 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 H 0.073 0.927 4 C -0.154 4.154 5 C -0.071 4.071 6 H 0.109 0.891 7 C -0.061 4.061 8 C -0.132 4.132 9 C -0.137 4.137 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.021 4.021 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.180 5.180 17 C 0.080 3.920 18 C -0.374 4.374 19 C -0.074 4.074 20 C -0.309 4.309 21 C 0.136 3.864 22 C -0.460 4.460 23 H 0.102 0.898 24 C -0.159 4.159 25 N -0.319 5.319 26 Si 0.728 3.272 27 H -0.185 1.185 28 H -0.198 1.198 29 H -0.199 1.199 30 N -0.166 5.166 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.877 -4.784 -12.790 14.500 hybrid contribution 0.870 1.345 0.325 1.635 sum 5.747 -3.439 -12.464 14.150 Atomic orbital electron populations 1.21675 0.94058 1.02089 1.00851 1.22342 0.96403 0.96181 0.88489 0.92704 1.22590 0.99212 0.96411 0.97195 1.21145 0.92852 0.99611 0.93482 0.89105 1.19841 0.95839 0.93565 0.96840 1.21060 0.94344 0.99074 0.98710 1.21118 0.97419 0.97414 0.97736 1.21090 0.99503 0.93616 1.00643 1.21100 0.94751 0.98814 0.99228 1.21079 0.97684 0.96903 0.97780 1.22746 0.91501 0.95714 0.92102 0.92483 1.21576 1.00783 0.97035 0.99310 1.61347 1.26149 1.26357 1.04146 1.19680 0.91522 0.89271 0.91508 1.21519 1.10591 1.05281 1.00041 1.20681 0.96765 0.96460 0.93462 1.21714 1.06419 1.04737 0.98061 1.18476 0.89109 0.87095 0.91688 1.19625 1.13381 1.16563 0.96384 0.89788 1.26080 0.97689 0.94770 0.97352 1.70183 1.22795 1.10497 1.28464 0.86335 0.79877 0.79051 0.81961 1.18482 1.19841 1.19866 1.68433 1.24392 1.26064 0.97724 0.92152 0.92185 0.93455 0.91551 0.90847 0.86154 0.86326 0.86496 0.86357 0.86089 0.93197 0.92460 0.91733 0.89456 0.88985 0.88459 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.32 37.15 0.35 -1.87 16 2 C 0.07 1.30 2.88 -66.64 -0.19 1.11 16 3 H 0.05 1.02 6.65 -51.93 -0.35 0.68 16 4 C -0.12 -1.63 6.05 -25.37 -0.15 -1.78 16 5 C -0.05 -0.74 2.72 -89.91 -0.24 -0.98 16 6 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 7 C -0.06 -0.78 4.93 -104.62 -0.52 -1.30 16 8 C -0.11 -1.44 8.14 -39.59 -0.32 -1.77 16 9 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 10 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 11 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 12 C -0.12 -1.34 9.68 -39.58 -0.38 -1.73 16 13 C 0.09 1.53 2.16 -65.79 -0.14 1.39 16 14 H 0.06 1.04 5.30 -51.93 -0.28 0.77 16 15 C -0.13 -2.30 9.44 37.16 0.35 -1.95 16 16 N -0.46 -9.41 4.69 -154.40 -0.72 -10.13 16 17 C 0.32 7.68 5.65 -155.32 -0.88 6.80 16 18 C -0.35 -7.90 7.90 -38.87 -0.31 -8.21 16 19 C -0.05 -1.12 10.15 -39.39 -0.40 -1.52 16 20 C -0.29 -7.12 9.83 -38.66 -0.38 -7.50 16 21 C 0.26 7.17 6.54 -85.00 -0.56 6.62 16 22 C -0.43 -11.47 9.13 -37.74 -0.34 -11.81 16 23 H 0.08 2.11 7.86 -52.48 -0.41 1.70 16 24 C 0.07 1.72 5.49 -17.34 -0.10 1.62 16 25 N -0.70 -18.61 11.48 55.55 0.64 -17.97 16 26 Si 0.90 18.61 29.56 -169.99 -5.03 13.59 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 28 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 29 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 30 N -0.45 -12.42 7.92 -10.33 -0.08 -12.50 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.86 7.04 -51.93 -0.37 0.50 16 35 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 36 H 0.12 1.56 7.27 -52.49 -0.38 1.18 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.22 7.98 -52.49 -0.42 0.80 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.80 7.03 -52.49 -0.37 1.43 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.27 6.61 8.29 -40.82 -0.34 6.28 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -29.30 377.23 -12.08 -41.38 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.16 Total: 7.93 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -5.41 Total: -27.98 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.17 Total: -40.60 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.30 -12.08 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.099 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds