Wall clock time and date at job start Tue Mar 31 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.07061 * 2 1 4 4 C 1.53999 * 109.91895 * 238.79503 * 2 1 3 5 5 C 1.54593 * 105.13989 * 239.42717 * 4 2 1 6 6 H 1.09002 * 110.72603 * 96.57747 * 5 4 2 7 7 C 1.50703 * 110.72086 * 219.68429 * 5 4 2 8 8 C 1.38225 * 120.00267 * 58.26864 * 7 5 4 9 9 C 1.38241 * 120.00300 * 180.36713 * 8 7 5 10 10 C 1.38233 * 119.99605 * 359.84222 * 9 8 7 11 11 C 1.38239 * 120.00170 * 0.13394 * 10 9 8 12 12 C 1.38227 * 119.99976 * 359.95202 * 11 10 9 13 13 C 1.54936 * 102.92077 * 338.03781 * 5 4 2 14 14 H 1.08998 * 110.66999 * 278.98343 * 13 5 4 15 15 C 1.53008 * 110.66827 * 155.85248 * 13 5 4 16 16 N 1.47902 * 109.91860 * 121.20739 * 2 1 3 17 17 C 1.38823 * 110.99831 * 265.19839 * 16 2 1 18 18 C 1.39796 * 119.58348 * 300.12234 * 17 16 2 19 19 C 1.38601 * 119.49160 * 180.02562 * 18 17 16 20 20 C 1.38382 * 118.68038 * 359.97438 * 19 18 17 21 21 C 1.40555 * 119.15004 * 0.02562 * 20 19 18 22 22 C 1.41311 * 119.78493 * 180.02562 * 21 20 19 23 23 H 1.08007 * 120.00147 * 353.78154 * 22 21 20 24 24 C 1.40028 * 120.00427 * 173.78320 * 22 21 20 25 25 N 1.30747 * 119.99659 * 6.35812 * 24 22 21 26 26 Si 1.86793 * 120.00459 * 186.35543 * 24 22 21 27 27 H 1.48501 * 109.47021 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47297 * 120.00070 * 26 24 22 29 29 H 1.48501 * 109.47442 * 240.00431 * 26 24 22 30 30 N 1.31958 * 119.58698 * 119.85155 * 17 16 2 31 31 H 1.08995 * 109.47556 * 179.75141 * 1 2 3 32 32 H 1.09005 * 109.47361 * 299.75655 * 1 2 3 33 33 H 1.09004 * 109.46936 * 59.74901 * 1 2 3 34 34 H 1.08997 * 110.31203 * 120.50853 * 4 2 1 35 35 H 1.08998 * 110.38966 * 358.38038 * 4 2 1 36 36 H 1.08002 * 120.00345 * 0.28236 * 8 7 5 37 37 H 1.07993 * 120.00203 * 179.97438 * 9 8 7 38 38 H 1.08004 * 120.00010 * 180.11513 * 10 9 8 39 39 H 1.08002 * 120.00038 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.00194 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46855 * 59.99460 * 15 13 5 42 42 H 1.08993 * 109.47433 * 180.02562 * 15 13 5 43 43 H 1.09005 * 109.46908 * 299.99942 * 15 13 5 44 44 H 1.08002 * 120.25773 * 0.02562 * 18 17 16 45 45 H 1.07998 * 120.65787 * 179.97438 * 19 18 17 46 46 H 1.07999 * 120.42526 * 179.97438 * 20 19 18 47 47 H 0.96993 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2384 5 6 2.9057 -1.9118 -0.6762 6 1 2.3221 -2.8313 -0.6319 7 6 4.1492 -2.1109 -1.5041 8 6 5.0470 -1.0721 -1.6637 9 6 6.1838 -1.2525 -2.4294 10 6 6.4243 -2.4727 -3.0327 11 6 5.5266 -3.5118 -2.8726 12 6 4.3891 -3.3309 -2.1085 13 6 3.2680 -1.4186 0.7472 14 1 4.1096 -0.7268 0.7121 15 6 3.5778 -2.6020 1.6662 16 7 2.0338 -0.7205 1.1893 17 6 2.3053 0.1609 2.2269 18 6 3.2486 1.1759 2.0413 19 6 3.5185 2.0545 3.0787 20 6 2.8401 1.8985 4.2747 21 6 1.9031 0.8583 4.3997 22 6 1.2023 0.6871 5.6148 23 1 1.4577 1.2883 6.4749 24 6 0.1766 -0.2620 5.7038 25 7 -0.0505 -1.0747 4.7051 26 14 -0.8672 -0.3671 7.2493 27 1 -0.4118 0.6558 8.2247 28 1 -2.2903 -0.1214 6.9032 29 1 -0.7299 -1.7189 7.8485 30 7 1.6658 0.0336 3.3741 31 1 -0.3634 -1.0276 -0.0045 32 1 -0.3634 0.5101 0.8922 33 1 -0.3633 0.5177 -0.8878 34 1 2.6714 -0.0896 -1.8477 35 1 1.2238 -1.1401 -1.8264 36 1 4.8597 -0.1191 -1.1914 37 1 6.8850 -0.4408 -2.5544 38 1 7.3133 -2.6143 -3.6293 39 1 5.7143 -4.4651 -3.3443 40 1 3.6875 -4.1425 -1.9838 41 1 4.4199 -3.1644 1.2630 42 1 3.8292 -2.2336 2.6607 43 1 2.7044 -3.2511 1.7297 44 1 3.7630 1.2746 1.0969 45 1 4.2439 2.8451 2.9561 46 1 3.0287 2.5670 5.1017 47 1 -0.7607 -1.7324 4.7668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326501085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:36 Heat of formation + Delta-G solvation = 54.327047 kcal Electronic energy + Delta-G solvation = -27387.245159 eV Core-core repulsion = 23919.941288 eV Total energy + Delta-G solvation = -3467.303871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.59298 -40.05935 -38.83358 -35.57093 -34.29758 -33.57420 -32.36749 -31.74380 -31.46461 -29.52415 -29.04677 -27.22507 -25.18014 -23.82421 -23.35678 -23.31268 -22.49893 -20.91260 -20.71869 -19.23770 -18.34641 -17.32161 -16.62109 -16.46200 -16.34200 -16.14728 -15.77701 -15.54480 -15.21452 -14.90017 -14.71869 -14.26551 -14.18479 -14.06009 -13.77188 -13.71246 -13.50454 -13.22771 -12.99835 -12.89248 -12.85944 -12.70633 -12.54098 -12.37989 -12.26935 -12.10950 -11.95591 -11.87009 -11.74379 -11.52623 -11.40277 -11.15288 -10.08680 -9.96826 -9.74964 -9.52666 -9.38615 -9.01647 -8.21579 -6.51287 0.48658 0.56117 0.79532 1.15724 1.39823 1.50199 1.55263 2.22548 2.80264 2.84332 2.90929 3.57839 3.75126 3.82701 3.98223 4.09910 4.12494 4.21013 4.26063 4.30144 4.32183 4.38810 4.43969 4.59191 4.63796 4.64634 4.70357 4.72043 4.79871 4.81773 4.85498 4.87574 4.96885 5.04626 5.09565 5.13837 5.20208 5.22518 5.26617 5.31069 5.35784 5.39658 5.63895 5.64431 5.68174 5.80434 5.81320 5.94313 6.11672 6.18389 6.24163 6.49407 6.80992 7.02940 8.25576 8.46090 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.003444 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.073252 B = 8127.629978 C = 8420.322822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.070 3.930 3 H 0.042 0.958 4 C -0.104 4.104 5 C -0.037 4.037 6 H 0.093 0.907 7 C -0.075 4.075 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.123 4.123 13 C 0.087 3.913 14 H 0.050 0.950 15 C -0.121 4.121 16 N -0.478 5.478 17 C 0.314 3.686 18 C -0.346 4.346 19 C -0.048 4.048 20 C -0.309 4.309 21 C 0.230 3.770 22 C -0.465 4.465 23 H 0.088 0.912 24 C 0.024 3.976 25 N -0.739 5.739 26 Si 0.985 3.015 27 H -0.254 1.254 28 H -0.267 1.267 29 H -0.266 1.266 30 N -0.491 5.491 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -4.274 -15.206 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 H 0.060 0.940 4 C -0.142 4.142 5 C -0.056 4.056 6 H 0.112 0.888 7 C -0.075 4.075 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.021 4.021 14 H 0.067 0.933 15 C -0.178 4.178 16 N -0.200 5.200 17 C 0.075 3.925 18 C -0.372 4.372 19 C -0.073 4.073 20 C -0.331 4.331 21 C 0.104 3.896 22 C -0.495 4.495 23 H 0.106 0.894 24 C -0.199 4.199 25 N -0.360 5.360 26 Si 0.805 3.195 27 H -0.178 1.178 28 H -0.192 1.192 29 H -0.191 1.191 30 N -0.204 5.204 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.128 0.872 45 H 0.146 0.854 46 H 0.126 0.874 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.834 -5.464 -14.920 16.926 hybrid contribution 0.708 1.563 0.842 1.911 sum 6.542 -3.901 -14.078 16.007 Atomic orbital electron populations 1.21633 0.94018 1.01910 1.00354 1.22440 0.96426 0.95854 0.89006 0.93984 1.22531 0.99938 0.96142 0.95564 1.20984 0.93812 0.99521 0.91290 0.88829 1.19707 0.95459 0.94534 0.97799 1.21092 0.95267 0.98774 0.99573 1.21366 0.97146 0.98518 0.97350 1.21455 1.00194 0.93033 1.00044 1.21440 0.94033 0.99966 0.98537 1.21283 0.98490 0.96593 0.97701 1.22791 0.90164 0.94995 0.94104 0.93259 1.21505 1.01390 0.97343 0.97598 1.61390 1.27757 1.26339 1.04563 1.20101 0.90976 0.89846 0.91553 1.21820 1.09915 1.04544 1.00919 1.21080 0.96659 0.97005 0.92524 1.21894 1.06867 1.04863 0.99487 1.18949 0.90147 0.88099 0.92382 1.19970 1.14891 1.17980 0.96707 0.89374 1.26984 0.98410 0.93727 1.00784 1.70298 1.23660 1.11286 1.30783 0.85128 0.77715 0.79281 0.77395 1.17776 1.19225 1.19067 1.68402 1.25987 1.27109 0.98934 0.92166 0.96393 0.90056 0.90178 0.88824 0.87138 0.84754 0.83955 0.83841 0.84891 0.90526 0.96216 0.92532 0.87206 0.85412 0.87410 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.32 71.98 0.67 -3.52 16 2 C 0.07 2.46 2.88 45.06 0.13 2.59 16 3 H 0.04 1.57 6.65 -2.39 -0.02 1.55 16 4 C -0.10 -2.73 6.05 31.47 0.19 -2.54 16 5 C -0.04 -1.01 2.72 -10.33 -0.03 -1.03 16 6 H 0.09 2.49 7.86 -2.39 -0.02 2.47 16 7 C -0.07 -1.77 4.93 -19.87 -0.10 -1.87 16 8 C -0.13 -3.04 8.14 22.27 0.18 -2.85 16 9 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 10 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 11 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 12 C -0.12 -2.49 9.68 22.27 0.22 -2.27 16 13 C 0.09 3.06 2.16 45.26 0.10 3.16 16 14 H 0.05 1.81 5.30 -2.39 -0.01 1.80 16 15 C -0.12 -4.40 9.44 71.98 0.68 -3.72 16 16 N -0.48 -20.11 4.69 -642.41 -3.01 -23.13 16 17 C 0.31 15.64 5.65 133.42 0.75 16.40 16 18 C -0.35 -15.87 7.90 22.73 0.18 -15.69 16 19 C -0.05 -2.20 10.15 22.39 0.23 -1.98 16 20 C -0.31 -15.81 9.83 22.87 0.22 -15.58 16 21 C 0.23 13.21 6.54 40.18 0.26 13.47 16 22 C -0.46 -25.98 9.13 23.46 0.21 -25.77 16 23 H 0.09 4.62 7.86 -2.91 -0.02 4.60 16 24 C 0.02 1.25 5.49 85.29 0.47 1.72 16 25 N -0.74 -41.14 11.48 21.84 0.25 -40.89 16 26 Si 0.98 39.20 29.56 68.60 2.03 41.23 16 27 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 28 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 29 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 30 N -0.49 -28.25 7.92 -186.59 -1.48 -29.73 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.08 1.91 7.04 -2.39 -0.02 1.89 16 35 H 0.09 2.11 7.69 -2.39 -0.02 2.09 16 36 H 0.11 2.74 7.27 -2.91 -0.02 2.72 16 37 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.13 2.30 7.98 -2.91 -0.02 2.28 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 43 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.11 4.46 7.03 -2.91 -0.02 4.44 16 45 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 46 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 47 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -67.47 377.23 3.78 -63.69 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.95 Total: 34.41 kcal Atomic # 6 Polarization: -50.62 SS G_CDS: 5.04 Total: -45.58 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -4.24 Total: -93.75 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -67.47 3.78 -63.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.016 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds