Wall clock time and date at job start Tue Mar 31 2020 14:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.59322 * 2 1 4 4 C 1.54938 * 110.66802 * 236.99213 * 2 1 3 5 5 C 1.54596 * 102.92178 * 203.98336 * 4 2 1 6 6 H 1.09007 * 110.30873 * 263.04433 * 5 4 2 7 7 C 1.50698 * 110.39584 * 140.91752 * 5 4 2 8 8 C 1.38236 * 119.99639 * 312.79901 * 7 5 4 9 9 C 1.38230 * 119.99775 * 179.76518 * 8 7 5 10 10 C 1.38238 * 119.99985 * 0.50354 * 9 8 7 11 11 C 1.38235 * 119.99768 * 359.74501 * 10 9 8 12 12 C 1.38228 * 120.00182 * 133.06731 * 7 5 4 13 13 C 1.53998 * 105.13959 * 21.95799 * 5 4 2 14 14 H 1.09000 * 109.91434 * 241.67423 * 13 5 4 15 15 C 1.52997 * 109.91937 * 120.57832 * 13 5 4 16 16 N 1.47899 * 107.05689 * 1.22526 * 13 5 4 17 17 C 1.38829 * 110.99797 * 214.15593 * 16 13 5 18 18 C 1.39800 * 119.58015 * 217.21746 * 17 16 13 19 19 C 1.38597 * 119.48735 * 179.79171 * 18 17 16 20 20 C 1.38393 * 118.67796 * 0.47497 * 19 18 17 21 21 C 1.40546 * 119.15283 * 359.74908 * 20 19 18 22 22 C 1.41311 * 119.78565 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00378 * 158.01116 * 22 21 20 24 24 C 1.40032 * 120.00036 * 338.00506 * 22 21 20 25 25 N 1.30745 * 119.99724 * 330.64308 * 24 22 21 26 26 Si 1.86793 * 119.99899 * 150.64345 * 24 22 21 27 27 H 1.48500 * 109.47312 * 94.99011 * 26 24 22 28 28 H 1.48500 * 109.46887 * 214.99035 * 26 24 22 29 29 H 1.48499 * 109.47366 * 334.98800 * 26 24 22 30 30 N 1.31947 * 119.58564 * 37.49090 * 17 16 13 31 31 H 1.09000 * 109.46558 * 187.50409 * 1 2 3 32 32 H 1.09000 * 109.46885 * 307.50174 * 1 2 3 33 33 H 1.08994 * 109.47050 * 67.50326 * 1 2 3 34 34 H 1.08998 * 110.72061 * 85.62492 * 4 2 1 35 35 H 1.08994 * 110.72621 * 322.34428 * 4 2 1 36 36 H 1.08001 * 120.00221 * 359.97438 * 8 7 5 37 37 H 1.08009 * 120.00136 * 180.22879 * 9 8 7 38 38 H 1.07997 * 120.00106 * 179.72576 * 10 9 8 39 39 H 1.08006 * 119.99652 * 179.97438 * 11 10 9 40 40 H 1.08002 * 120.00271 * 359.97438 * 12 7 5 41 41 H 1.09004 * 109.46648 * 53.08584 * 15 13 5 42 42 H 1.09008 * 109.46950 * 293.09262 * 15 13 5 43 43 H 1.08993 * 109.47281 * 173.08975 * 15 13 5 44 44 H 1.08001 * 120.25499 * 359.97438 * 18 17 16 45 45 H 1.07996 * 120.66278 * 180.22219 * 19 18 17 46 46 H 1.08004 * 120.41978 * 179.72530 * 20 19 18 47 47 H 0.97001 * 119.99435 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0769 -0.7897 -1.2157 5 6 3.4870 -1.2148 -0.7458 6 1 4.2370 -0.5190 -1.1221 7 6 3.7950 -2.6153 -1.2092 8 6 2.8625 -3.6211 -1.0367 9 6 3.1430 -4.9047 -1.4661 10 6 4.3602 -5.1848 -2.0586 11 6 5.2946 -4.1801 -2.2265 12 6 5.0121 -2.8954 -1.8017 13 6 3.4318 -1.1608 0.7922 14 1 4.1493 -0.4293 1.1641 15 6 3.7456 -2.5406 1.3739 16 7 2.0578 -0.7583 1.1631 17 6 2.0612 0.0263 2.3084 18 6 1.0334 -0.1156 3.2453 19 6 1.0411 0.6656 4.3901 20 6 2.0687 1.5756 4.5662 21 6 3.0708 1.6749 3.5858 22 6 4.1266 2.5992 3.7523 23 1 5.0592 2.4542 3.2272 24 6 3.9638 3.7033 4.5981 25 7 2.7763 4.2207 4.7763 26 14 5.4430 4.4370 5.4715 27 1 5.9747 5.5725 4.6759 28 1 5.0346 4.9218 6.8144 29 1 6.4956 3.3999 5.6186 30 7 3.0316 0.9004 2.4963 31 1 -0.3632 -1.0189 0.1342 32 1 -0.3633 0.6256 0.8153 33 1 -0.3633 0.3932 -0.9494 34 1 2.1402 -0.1488 -2.0950 35 1 1.4579 -1.6637 -1.4180 36 1 1.9134 -3.4033 -0.5695 37 1 2.4130 -5.6898 -1.3347 38 1 4.5811 -6.1886 -2.3901 39 1 6.2458 -4.3990 -2.6890 40 1 5.7422 -2.1104 -1.9329 41 1 4.6884 -2.9020 0.9634 42 1 2.9463 -3.2348 1.1141 43 1 3.8256 -2.4681 2.4585 44 1 0.2410 -0.8306 3.0797 45 1 0.2585 0.5690 5.1280 46 1 2.1000 2.2017 5.4457 47 1 2.6635 4.9853 5.3625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326501088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:40 Heat of formation + Delta-G solvation = 62.697829 kcal Electronic energy + Delta-G solvation = -27297.724769 eV Core-core repulsion = 23830.783883 eV Total energy + Delta-G solvation = -3466.940886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.39007 -38.80714 -37.28946 -34.08863 -33.06303 -32.04431 -30.89931 -30.74653 -29.64686 -28.22696 -27.51706 -25.57394 -24.16847 -22.49012 -22.12377 -21.37174 -21.25498 -19.81745 -18.98992 -17.71487 -16.65107 -16.00648 -15.43023 -15.21386 -14.91533 -14.75004 -14.44841 -14.19842 -13.82097 -13.60781 -13.40821 -13.22084 -13.07176 -12.48701 -12.40629 -12.20065 -11.89134 -11.85054 -11.69561 -11.67200 -11.48936 -11.27625 -11.05526 -10.90199 -10.78287 -10.67815 -10.56023 -10.49458 -10.30939 -10.19429 -10.05359 -9.17897 -8.79275 -8.52213 -8.48800 -8.21201 -7.75553 -7.26312 -7.00659 -4.52191 1.43847 1.47839 2.64410 2.85014 3.02092 3.05027 3.16637 3.84558 3.84775 4.38085 4.44632 4.73550 4.87919 5.03212 5.06285 5.11012 5.22469 5.42701 5.53377 5.59763 5.60704 5.66738 5.80444 5.82671 5.92031 6.01281 6.04522 6.05896 6.08932 6.13726 6.17248 6.23348 6.29879 6.42369 6.52802 6.55279 6.57648 6.61135 6.62093 6.65928 6.78124 6.90358 6.94219 7.00895 7.05135 7.08891 7.40056 7.64860 7.74975 7.81699 8.20122 8.37534 8.58961 8.88078 9.80815 9.99809 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003460 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.723300 B = 8090.308577 C = 8872.430711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.060 4.060 6 H 0.080 0.920 7 C -0.053 4.053 8 C -0.104 4.104 9 C -0.124 4.124 10 C -0.131 4.131 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.073 3.927 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.456 5.456 17 C 0.303 3.697 18 C -0.270 4.270 19 C -0.070 4.070 20 C -0.219 4.219 21 C 0.288 3.712 22 C -0.447 4.447 23 H 0.086 0.914 24 C 0.087 3.913 25 N -0.774 5.774 26 Si 0.907 3.093 27 H -0.269 1.269 28 H -0.274 1.274 29 H -0.257 1.257 30 N -0.586 5.586 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.115 0.885 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -10.949 -10.000 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.079 4.079 6 H 0.099 0.901 7 C -0.053 4.053 8 C -0.122 4.122 9 C -0.142 4.142 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.140 4.140 13 C -0.035 4.035 14 H 0.106 0.894 15 C -0.190 4.190 16 N -0.179 5.179 17 C 0.071 3.929 18 C -0.295 4.295 19 C -0.094 4.094 20 C -0.241 4.241 21 C 0.162 3.838 22 C -0.479 4.479 23 H 0.104 0.896 24 C -0.135 4.135 25 N -0.398 5.398 26 Si 0.730 3.270 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.181 1.181 30 N -0.304 5.304 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.133 0.867 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.349 -11.114 -10.373 15.206 hybrid contribution 0.364 1.087 1.062 1.562 sum 0.713 -10.027 -9.311 13.702 Atomic orbital electron populations 1.21647 0.94097 1.02240 1.01097 1.22676 0.95673 0.96309 0.88966 0.92185 1.22694 0.94890 1.00111 0.97126 1.21122 0.98017 0.92821 0.95981 0.90123 1.19737 0.93827 0.95264 0.96486 1.21106 0.99852 0.92471 0.98789 1.21109 0.97093 0.96728 0.99277 1.21057 0.94369 0.98893 1.00630 1.21054 0.99209 0.93214 1.00634 1.21068 0.96623 0.96814 0.99479 1.22333 0.91401 0.97906 0.91846 0.89405 1.21933 1.00414 0.96274 1.00340 1.62678 1.18908 1.34776 1.01561 1.19563 0.91797 0.90424 0.91137 1.20767 1.02902 1.07767 0.98036 1.20944 0.97163 0.95252 0.96089 1.21934 0.98259 1.02051 1.01881 1.18173 0.90930 0.89093 0.85653 1.19269 0.99846 1.05557 1.23209 0.89594 1.25920 0.97098 0.95812 0.94718 1.69880 1.24684 1.17549 1.27675 0.86328 0.82069 0.79551 0.79037 1.19385 1.19847 1.18060 1.67992 1.28144 1.10604 1.23672 0.92077 0.92389 0.92798 0.91315 0.90441 0.85415 0.86448 0.86687 0.86557 0.86342 0.92937 0.91814 0.93407 0.88195 0.88357 0.86681 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.44 37.16 0.35 -1.67 16 2 C 0.07 1.21 2.87 -65.78 -0.19 1.02 16 3 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 4 C -0.11 -1.53 5.89 -24.87 -0.15 -1.67 16 5 C -0.06 -0.88 3.21 -90.41 -0.29 -1.17 16 6 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 7 C -0.05 -0.69 3.22 -104.63 -0.34 -1.03 16 8 C -0.10 -1.30 6.36 -39.58 -0.25 -1.55 16 9 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 10 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 11 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 12 C -0.12 -1.47 9.60 -39.59 -0.38 -1.85 16 13 C 0.07 1.30 2.95 -66.64 -0.20 1.11 16 14 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 15 C -0.13 -2.18 8.20 37.16 0.30 -1.88 16 16 N -0.46 -8.67 4.59 -154.40 -0.71 -9.38 16 17 C 0.30 6.97 5.37 -155.32 -0.83 6.13 16 18 C -0.27 -6.11 10.03 -38.87 -0.39 -6.50 16 19 C -0.07 -1.63 10.15 -39.39 -0.40 -2.03 16 20 C -0.22 -5.66 8.79 -38.65 -0.34 -6.00 16 21 C 0.29 7.82 6.42 -85.00 -0.55 7.27 16 22 C -0.45 -11.95 9.20 -37.74 -0.35 -12.30 16 23 H 0.09 2.28 7.99 -52.49 -0.42 1.86 16 24 C 0.09 2.14 4.85 -17.34 -0.08 2.05 16 25 N -0.77 -19.48 11.53 55.55 0.64 -18.84 16 26 Si 0.91 18.20 29.65 -169.99 -5.04 13.16 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 29 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 30 N -0.59 -15.06 8.62 -10.33 -0.09 -15.14 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 36 H 0.13 1.62 6.63 -52.49 -0.35 1.27 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.12 1.30 8.00 -52.49 -0.42 0.88 16 41 H 0.05 0.81 7.12 -51.93 -0.37 0.44 16 42 H 0.06 0.99 5.61 -51.92 -0.29 0.70 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 46 H 0.12 3.00 6.39 -52.48 -0.34 2.67 16 47 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -27.85 372.15 -11.89 -39.74 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.04 Total: 10.18 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -5.27 Total: -25.33 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.16 Total: -43.36 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.85 -11.89 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.439 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds