Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.59322 * 2 1 4 4 C 1.54938 * 110.66802 * 236.99213 * 2 1 3 5 5 C 1.54596 * 102.92178 * 203.98336 * 4 2 1 6 6 H 1.09007 * 110.30873 * 263.04433 * 5 4 2 7 7 C 1.50698 * 110.39584 * 140.91752 * 5 4 2 8 8 C 1.38236 * 119.99639 * 312.79901 * 7 5 4 9 9 C 1.38230 * 119.99775 * 179.76518 * 8 7 5 10 10 C 1.38238 * 119.99985 * 0.50354 * 9 8 7 11 11 C 1.38235 * 119.99768 * 359.74501 * 10 9 8 12 12 C 1.38228 * 120.00182 * 133.06731 * 7 5 4 13 13 C 1.53998 * 105.13959 * 21.95799 * 5 4 2 14 14 H 1.09000 * 109.91434 * 241.67423 * 13 5 4 15 15 C 1.52997 * 109.91937 * 120.57832 * 13 5 4 16 16 N 1.47899 * 107.05689 * 1.22526 * 13 5 4 17 17 C 1.38829 * 110.99797 * 214.15593 * 16 13 5 18 18 C 1.39800 * 119.58015 * 217.21746 * 17 16 13 19 19 C 1.38597 * 119.48735 * 179.79171 * 18 17 16 20 20 C 1.38393 * 118.67796 * 0.47497 * 19 18 17 21 21 C 1.40546 * 119.15283 * 359.74908 * 20 19 18 22 22 C 1.41311 * 119.78565 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00378 * 158.01116 * 22 21 20 24 24 C 1.40032 * 120.00036 * 338.00506 * 22 21 20 25 25 N 1.30745 * 119.99724 * 330.64308 * 24 22 21 26 26 Si 1.86793 * 119.99899 * 150.64345 * 24 22 21 27 27 H 1.48500 * 109.47312 * 94.99011 * 26 24 22 28 28 H 1.48500 * 109.46887 * 214.99035 * 26 24 22 29 29 H 1.48499 * 109.47366 * 334.98800 * 26 24 22 30 30 N 1.31947 * 119.58564 * 37.49090 * 17 16 13 31 31 H 1.09000 * 109.46558 * 187.50409 * 1 2 3 32 32 H 1.09000 * 109.46885 * 307.50174 * 1 2 3 33 33 H 1.08994 * 109.47050 * 67.50326 * 1 2 3 34 34 H 1.08998 * 110.72061 * 85.62492 * 4 2 1 35 35 H 1.08994 * 110.72621 * 322.34428 * 4 2 1 36 36 H 1.08001 * 120.00221 * 359.97438 * 8 7 5 37 37 H 1.08009 * 120.00136 * 180.22879 * 9 8 7 38 38 H 1.07997 * 120.00106 * 179.72576 * 10 9 8 39 39 H 1.08006 * 119.99652 * 179.97438 * 11 10 9 40 40 H 1.08002 * 120.00271 * 359.97438 * 12 7 5 41 41 H 1.09004 * 109.46648 * 53.08584 * 15 13 5 42 42 H 1.09008 * 109.46950 * 293.09262 * 15 13 5 43 43 H 1.08993 * 109.47281 * 173.08975 * 15 13 5 44 44 H 1.08001 * 120.25499 * 359.97438 * 18 17 16 45 45 H 1.07996 * 120.66278 * 180.22219 * 19 18 17 46 46 H 1.08004 * 120.41978 * 179.72530 * 20 19 18 47 47 H 0.97001 * 119.99435 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0769 -0.7897 -1.2157 5 6 3.4870 -1.2148 -0.7458 6 1 4.2370 -0.5190 -1.1221 7 6 3.7950 -2.6153 -1.2092 8 6 2.8625 -3.6211 -1.0367 9 6 3.1430 -4.9047 -1.4661 10 6 4.3602 -5.1848 -2.0586 11 6 5.2946 -4.1801 -2.2265 12 6 5.0121 -2.8954 -1.8017 13 6 3.4318 -1.1608 0.7922 14 1 4.1493 -0.4293 1.1641 15 6 3.7456 -2.5406 1.3739 16 7 2.0578 -0.7583 1.1631 17 6 2.0612 0.0263 2.3084 18 6 1.0334 -0.1156 3.2453 19 6 1.0411 0.6656 4.3901 20 6 2.0687 1.5756 4.5662 21 6 3.0708 1.6749 3.5858 22 6 4.1266 2.5992 3.7523 23 1 5.0592 2.4542 3.2272 24 6 3.9638 3.7033 4.5981 25 7 2.7763 4.2207 4.7763 26 14 5.4430 4.4370 5.4715 27 1 5.9747 5.5725 4.6759 28 1 5.0346 4.9218 6.8144 29 1 6.4956 3.3999 5.6186 30 7 3.0316 0.9004 2.4963 31 1 -0.3632 -1.0189 0.1342 32 1 -0.3633 0.6256 0.8153 33 1 -0.3633 0.3932 -0.9494 34 1 2.1402 -0.1488 -2.0950 35 1 1.4579 -1.6637 -1.4180 36 1 1.9134 -3.4033 -0.5695 37 1 2.4130 -5.6898 -1.3347 38 1 4.5811 -6.1886 -2.3901 39 1 6.2458 -4.3990 -2.6890 40 1 5.7422 -2.1104 -1.9329 41 1 4.6884 -2.9020 0.9634 42 1 2.9463 -3.2348 1.1141 43 1 3.8256 -2.4681 2.4585 44 1 0.2410 -0.8306 3.0797 45 1 0.2585 0.5690 5.1280 46 1 2.1000 2.2017 5.4457 47 1 2.6635 4.9853 5.3625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326501088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = 50.351634 kcal Electronic energy + Delta-G solvation = -27298.260141 eV Core-core repulsion = 23830.783883 eV Total energy + Delta-G solvation = -3467.476258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71274 -40.19244 -38.76634 -35.87163 -34.39535 -33.53510 -32.63254 -31.76756 -31.04637 -29.48541 -29.09038 -27.44030 -25.32183 -23.74819 -23.28259 -23.24523 -22.58952 -21.21738 -20.31337 -19.51241 -17.78298 -17.47235 -17.20857 -16.59063 -16.28679 -16.06719 -15.85105 -15.76860 -15.22577 -14.77978 -14.73619 -14.58515 -14.18638 -14.04117 -13.85353 -13.68872 -13.34673 -13.24588 -13.09015 -12.95245 -12.88945 -12.77253 -12.50118 -12.36121 -12.20539 -12.06448 -11.96506 -11.90060 -11.78809 -11.46289 -11.34993 -11.04005 -10.31700 -10.04896 -9.67715 -9.63990 -9.42266 -9.10324 -8.87515 -6.52631 0.54473 0.61368 0.79810 0.97902 1.34649 1.43685 1.53649 2.15529 2.54511 2.91001 2.95673 3.53767 3.63719 3.77485 3.90717 4.13693 4.17660 4.25426 4.27735 4.35918 4.38976 4.41536 4.48076 4.60098 4.64341 4.69623 4.73953 4.77836 4.79702 4.86302 4.88647 4.97757 5.01426 5.06874 5.12823 5.15529 5.19992 5.23378 5.27470 5.29658 5.33898 5.41766 5.68921 5.70654 5.73214 5.82844 5.86633 5.89229 5.97454 6.22731 6.31386 6.44172 6.65099 6.95722 7.88091 8.15657 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003460 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.723300 B = 8090.308577 C = 8872.430711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.065 3.935 3 H 0.022 0.978 4 C -0.097 4.097 5 C -0.052 4.052 6 H 0.075 0.925 7 C -0.066 4.066 8 C -0.114 4.114 9 C -0.126 4.126 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.133 4.133 13 C 0.071 3.929 14 H 0.045 0.955 15 C -0.118 4.118 16 N -0.449 5.449 17 C 0.301 3.699 18 C -0.273 4.273 19 C -0.065 4.065 20 C -0.249 4.249 21 C 0.260 3.740 22 C -0.486 4.486 23 H 0.071 0.929 24 C 0.052 3.948 25 N -0.801 5.801 26 Si 0.984 3.016 27 H -0.259 1.259 28 H -0.257 1.257 29 H -0.261 1.261 30 N -0.609 5.609 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.020 0.980 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.105 0.895 47 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -12.852 -11.250 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.042 4.042 3 H 0.040 0.960 4 C -0.135 4.135 5 C -0.071 4.071 6 H 0.093 0.907 7 C -0.067 4.067 8 C -0.131 4.131 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.152 4.152 13 C -0.037 4.037 14 H 0.063 0.937 15 C -0.175 4.175 16 N -0.172 5.172 17 C 0.068 3.932 18 C -0.297 4.297 19 C -0.090 4.090 20 C -0.271 4.271 21 C 0.134 3.866 22 C -0.518 4.518 23 H 0.089 0.911 24 C -0.168 4.168 25 N -0.425 5.425 26 Si 0.803 3.197 27 H -0.183 1.183 28 H -0.181 1.181 29 H -0.185 1.185 30 N -0.328 5.328 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.123 0.877 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.041 -13.020 -11.634 17.461 hybrid contribution 0.414 1.581 1.340 2.114 sum 0.455 -11.439 -10.294 15.395 Atomic orbital electron populations 1.21612 0.92269 1.02777 1.01660 1.22788 0.97092 0.94652 0.89620 0.95977 1.22667 0.94286 1.00487 0.96012 1.20984 0.98511 0.94419 0.93228 0.90657 1.19575 0.94831 0.94219 0.98034 1.21129 0.99600 0.93049 0.99363 1.21389 0.97854 0.96565 0.98563 1.21423 0.93820 1.00021 0.99505 1.21351 1.00284 0.92621 1.00075 1.21222 0.96385 0.97820 0.99724 1.22302 0.89671 0.97256 0.94513 0.93720 1.21819 1.01503 0.95811 0.98381 1.62818 1.19562 1.33678 1.01143 1.20050 0.91017 0.89685 0.92435 1.21089 1.03237 1.07827 0.97587 1.21294 0.96895 0.93967 0.96830 1.21882 0.99648 1.03781 1.01802 1.18534 0.91779 0.89829 0.86463 1.19462 0.99574 1.07237 1.25501 0.91058 1.26766 1.00266 0.95373 0.94426 1.69877 1.26630 1.18094 1.27948 0.85190 0.77708 0.78545 0.78255 1.18302 1.18082 1.18519 1.68066 1.29540 1.11483 1.23669 0.90583 0.94890 0.90045 0.89527 0.88549 0.85749 0.84349 0.84097 0.84421 0.86060 0.91899 0.90339 0.96045 0.85761 0.85239 0.87669 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.44 71.98 0.68 -2.98 16 2 C 0.07 2.24 2.87 45.26 0.13 2.37 16 3 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 4 C -0.10 -2.56 5.89 31.80 0.19 -2.37 16 5 C -0.05 -1.52 3.21 -10.66 -0.03 -1.55 16 6 H 0.07 2.23 7.96 -2.38 -0.02 2.21 16 7 C -0.07 -1.64 3.22 -19.87 -0.06 -1.70 16 8 C -0.11 -2.56 6.36 22.27 0.14 -2.41 16 9 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 10 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 11 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 12 C -0.13 -3.00 9.60 22.27 0.21 -2.79 16 13 C 0.07 2.60 2.95 45.06 0.13 2.73 16 14 H 0.04 2.04 6.58 -2.39 -0.02 2.02 16 15 C -0.12 -3.93 8.20 71.98 0.59 -3.34 16 16 N -0.45 -17.36 4.59 -642.40 -2.95 -20.31 16 17 C 0.30 14.33 5.37 133.42 0.72 15.04 16 18 C -0.27 -12.46 10.03 22.73 0.23 -12.24 16 19 C -0.07 -3.08 10.15 22.39 0.23 -2.86 16 20 C -0.25 -13.43 8.79 22.87 0.20 -13.23 16 21 C 0.26 14.97 6.42 40.17 0.26 15.23 16 22 C -0.49 -27.58 9.20 23.46 0.22 -27.36 16 23 H 0.07 4.08 7.99 -2.91 -0.02 4.06 16 24 C 0.05 2.63 4.85 85.29 0.41 3.05 16 25 N -0.80 -41.49 11.53 21.84 0.25 -41.24 16 26 Si 0.98 38.09 29.65 68.60 2.03 40.12 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 29 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 30 N -0.61 -33.24 8.62 -186.59 -1.61 -34.85 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.22 6.18 -2.39 -0.01 2.21 16 36 H 0.12 2.85 6.63 -2.91 -0.02 2.83 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.12 2.56 8.00 -2.91 -0.02 2.54 16 41 H 0.06 1.94 7.12 -2.39 -0.02 1.92 16 42 H 0.08 2.37 5.61 -2.38 -0.01 2.36 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 45 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 46 H 0.11 5.75 6.39 -2.91 -0.02 5.73 16 47 H 0.30 13.54 8.29 -92.71 -0.77 12.77 16 Total: -1.00 -64.48 372.15 3.59 -60.89 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.95 Total: 36.10 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.91 Total: -40.72 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -4.31 Total: -96.40 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -64.48 3.59 -60.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326501088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.241 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds