Wall clock time and date at job start Tue Mar 31 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47143 * 2 1 4 4 C 1.50702 * 109.46733 * 240.00135 * 2 1 3 5 5 C 1.38237 * 119.99842 * 299.72654 * 4 2 1 6 6 C 1.38241 * 119.99835 * 179.75114 * 5 4 2 7 7 C 1.38235 * 119.99877 * 0.54795 * 6 5 4 8 8 C 1.38242 * 120.00077 * 359.70245 * 7 6 5 9 9 C 1.38235 * 120.00040 * 120.00425 * 4 2 1 10 10 C 1.52995 * 109.46914 * 120.00245 * 2 1 3 11 11 H 1.09003 * 110.33548 * 60.70061 * 10 2 1 12 12 C 1.54905 * 110.37423 * 182.95090 * 10 2 1 13 13 C 1.55428 * 101.52108 * 155.94934 * 12 10 2 14 14 C 1.54322 * 103.04969 * 324.36663 * 13 12 10 15 15 N 1.47447 * 107.22949 * 22.28480 * 14 13 12 16 16 C 1.38813 * 110.99923 * 123.25709 * 15 14 13 17 17 C 1.39801 * 119.58743 * 59.15939 * 16 15 14 18 18 C 1.38593 * 119.49232 * 179.97438 * 17 16 15 19 19 C 1.38388 * 118.68277 * 359.97438 * 18 17 16 20 20 C 1.40553 * 119.14618 * 0.02562 * 19 18 17 21 21 C 1.41316 * 119.77944 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00272 * 18.05930 * 21 20 19 23 23 C 1.40030 * 119.99669 * 198.05801 * 21 20 19 24 24 N 1.30738 * 120.00225 * 9.12345 * 23 21 20 25 25 Si 1.86805 * 119.99635 * 189.12722 * 23 21 20 26 26 H 1.48494 * 109.47076 * 90.00045 * 25 23 21 27 27 H 1.48504 * 109.46557 * 209.99760 * 25 23 21 28 28 H 1.48501 * 109.47237 * 329.99553 * 25 23 21 29 29 N 1.31959 * 119.58698 * 238.87971 * 16 15 14 30 30 H 1.08991 * 109.47075 * 300.00306 * 1 2 3 31 31 H 1.09004 * 109.46436 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.00624 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.00162 * 180.27502 * 6 5 4 35 35 H 1.07999 * 120.00263 * 179.72830 * 7 6 5 36 36 H 1.07997 * 120.00269 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.99894 * 359.97438 * 9 4 2 38 38 H 1.08996 * 110.99373 * 274.10117 * 12 10 2 39 39 H 1.09000 * 110.98995 * 37.91756 * 12 10 2 40 40 H 1.09004 * 110.69476 * 205.97503 * 13 12 10 41 41 H 1.08999 * 110.84634 * 82.82959 * 13 12 10 42 42 H 1.09003 * 109.88666 * 262.88541 * 14 13 12 43 43 H 1.08996 * 109.89079 * 141.68787 * 14 13 12 44 44 H 1.08001 * 120.25149 * 0.02562 * 17 16 15 45 45 H 1.07999 * 120.65563 * 180.02562 * 18 17 16 46 46 H 1.08001 * 120.42330 * 179.97438 * 19 18 17 47 47 H 0.96994 * 120.00457 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7029 -2.0355 -1.4464 6 6 2.1594 -2.6857 -2.5778 7 6 2.9545 -2.0140 -3.4875 8 6 3.2882 -0.6904 -3.2690 9 6 2.8271 -0.0386 -2.1404 10 6 2.0400 -0.7213 1.2492 11 1 1.6947 -1.7551 1.2571 12 6 3.5870 -0.6691 1.3083 13 6 3.8456 -0.8440 2.8309 14 6 2.6662 -0.0844 3.4741 15 7 1.5891 -0.0186 2.4694 16 6 0.4164 -0.5763 2.9600 17 6 -0.1696 -0.0472 4.1137 18 6 -1.3407 -0.6052 4.6016 19 6 -1.8978 -1.6767 3.9257 20 6 -1.2610 -2.1636 2.7712 21 6 -1.8185 -3.2568 2.0703 22 1 -2.8513 -3.5299 2.2289 23 6 -1.0318 -3.9859 1.1701 24 7 0.2568 -3.7741 1.1078 25 14 -1.8237 -5.2610 0.0581 26 1 -2.2419 -4.6178 -1.2133 27 1 -0.8460 -6.3406 -0.2315 28 1 -3.0125 -5.8385 0.7352 29 7 -0.1342 -1.5958 2.3285 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.0854 -2.5616 -0.7335 34 1 1.8984 -3.7196 -2.7487 35 1 3.3148 -2.5232 -4.3691 36 1 3.9097 -0.1658 -3.9794 37 1 3.0877 0.9954 -1.9697 38 1 4.0274 -1.4876 0.7389 39 1 3.9589 0.2934 0.9569 40 1 4.7959 -0.3918 3.1147 41 1 3.8233 -1.8975 3.1096 42 1 2.9795 0.9230 3.7484 43 1 2.3175 -0.6200 4.3570 44 1 0.2864 0.7905 4.6205 45 1 -1.8096 -0.2111 5.4911 46 1 -2.8096 -2.1333 4.2814 47 1 0.8018 -4.2793 0.4845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334305082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:05 Heat of formation + Delta-G solvation = 66.071159 kcal Electronic energy + Delta-G solvation = -28540.083365 eV Core-core repulsion = 25073.288757 eV Total energy + Delta-G solvation = -3466.794608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.89709 -38.66771 -37.11892 -34.05357 -33.48554 -31.76923 -30.52927 -30.45357 -29.01580 -28.29488 -27.31750 -25.45559 -23.39081 -22.27227 -21.93247 -21.59358 -20.56348 -19.91213 -18.70228 -17.53011 -16.53729 -16.22641 -15.34266 -14.94967 -14.75417 -14.56915 -14.26967 -14.14680 -13.43135 -13.35347 -12.96260 -12.88186 -12.72522 -12.59147 -12.37672 -12.18893 -12.10981 -11.59887 -11.44658 -11.33555 -11.15381 -11.02731 -10.88270 -10.78444 -10.62666 -10.52856 -10.37870 -10.18456 -10.06277 -9.94911 -9.79215 -9.31075 -8.70101 -8.52600 -8.22051 -8.06533 -7.52604 -6.92239 -6.61322 -4.52883 1.75093 1.80321 2.70059 2.96336 3.06339 3.08593 3.17747 3.91206 4.17430 4.48261 4.74817 5.08840 5.19123 5.24660 5.26449 5.36420 5.44167 5.57718 5.71476 5.81421 5.89525 5.96013 5.98857 6.05014 6.08816 6.13180 6.15546 6.25744 6.31796 6.34564 6.48860 6.52427 6.53542 6.58765 6.65789 6.72237 6.76758 6.78808 6.88350 6.95224 6.97867 7.09687 7.16311 7.28951 7.39753 7.44883 7.50488 7.65163 7.75646 7.86032 8.17035 8.37397 8.68717 8.94851 10.00463 10.24196 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.007099 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.954657 B = 3943.350632 C = 5956.465535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 H 0.062 0.938 4 C -0.059 4.059 5 C -0.109 4.109 6 C -0.125 4.125 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.123 4.123 10 C 0.073 3.927 11 H 0.133 0.867 12 C -0.124 4.124 13 C -0.139 4.139 14 C 0.058 3.942 15 N -0.474 5.474 16 C 0.321 3.679 17 C -0.312 4.312 18 C -0.047 4.047 19 C -0.291 4.291 20 C 0.288 3.712 21 C -0.441 4.441 22 H 0.082 0.918 23 C 0.087 3.913 24 N -0.740 5.740 25 Si 0.896 3.104 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.263 1.263 29 N -0.507 5.507 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 3.177 -4.424 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.045 4.045 3 H 0.081 0.919 4 C -0.059 4.059 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.142 4.142 10 C -0.034 4.034 11 H 0.150 0.850 12 C -0.163 4.163 13 C -0.178 4.178 14 C -0.069 4.069 15 N -0.192 5.192 16 C 0.083 3.917 17 C -0.337 4.337 18 C -0.072 4.072 19 C -0.314 4.314 20 C 0.161 3.839 21 C -0.473 4.473 22 H 0.100 0.900 23 C -0.136 4.136 24 N -0.363 5.363 25 Si 0.721 3.279 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.187 1.187 29 N -0.224 5.224 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.349 3.284 -5.374 9.678 hybrid contribution -0.582 -0.838 0.450 1.115 sum 6.767 2.447 -4.923 8.719 Atomic orbital electron populations 1.21796 0.93477 1.03843 0.99621 1.19939 0.96766 0.97253 0.90558 0.91916 1.19990 0.95912 0.94218 0.95802 1.21631 0.99006 0.94641 0.97356 1.21163 0.98445 0.99730 0.94950 1.21018 0.99801 0.94994 0.99456 1.20982 1.00945 0.95001 0.97756 1.21032 0.98759 0.99566 0.94796 1.22871 0.91451 1.01444 0.87586 0.84958 1.22787 0.96983 1.01226 0.95279 1.22793 0.98048 1.00673 0.96252 1.22709 0.90146 0.99803 0.94278 1.60548 1.02447 1.51335 1.04889 1.19815 0.92012 0.89682 0.90193 1.20722 1.02240 1.07552 1.03172 1.20730 0.94446 0.94882 0.97116 1.21707 1.04709 1.03713 1.01231 1.18255 0.86871 0.90630 0.88174 1.19454 0.98108 1.10028 1.19678 0.90006 1.25844 0.94466 0.97066 0.96201 1.69862 1.05067 1.32908 1.28462 0.86499 0.80194 0.80273 0.80969 1.19172 1.20206 1.18674 1.68354 1.13621 1.08090 1.32374 0.92366 0.95337 0.90057 0.83575 0.86741 0.87001 0.86923 0.86769 0.91426 0.91802 0.91517 0.91482 0.91181 0.92238 0.88756 0.88686 0.88515 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 7.65 37.16 0.28 -2.38 16 2 C -0.03 -0.48 2.32 -91.77 -0.21 -0.69 16 3 H 0.06 1.10 7.88 -51.93 -0.41 0.70 16 4 C -0.06 -1.01 4.21 -104.62 -0.44 -1.45 16 5 C -0.11 -1.95 8.71 -39.58 -0.34 -2.29 16 6 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 7 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 8 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 9 C -0.12 -1.85 9.67 -39.58 -0.38 -2.23 16 10 C 0.07 1.41 1.71 -66.19 -0.11 1.29 16 11 H 0.13 2.94 4.79 -51.93 -0.25 2.69 16 12 C -0.12 -2.03 5.94 -24.44 -0.15 -2.18 16 13 C -0.14 -2.16 6.95 -24.75 -0.17 -2.33 16 14 C 0.06 1.00 6.42 -2.83 -0.02 0.98 16 15 N -0.47 -9.46 4.63 -162.51 -0.75 -10.21 16 16 C 0.32 7.32 4.62 -155.33 -0.72 6.60 16 17 C -0.31 -6.92 9.03 -38.87 -0.35 -7.27 16 18 C -0.05 -1.04 10.15 -39.39 -0.40 -1.44 16 19 C -0.29 -6.94 9.83 -38.65 -0.38 -7.32 16 20 C 0.29 7.35 6.42 -85.00 -0.55 6.81 16 21 C -0.44 -11.06 9.12 -37.74 -0.34 -11.40 16 22 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 23 C 0.09 2.05 5.43 -17.35 -0.09 1.96 16 24 N -0.74 -17.42 9.45 55.55 0.52 -16.89 16 25 Si 0.90 17.81 29.57 -169.99 -5.03 12.78 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 27 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 28 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 29 N -0.51 -12.39 4.10 -10.33 -0.04 -12.43 16 30 H 0.06 1.29 6.52 -51.93 -0.34 0.95 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.88 6.53 -51.93 -0.34 1.54 16 33 H 0.15 2.94 5.09 -52.49 -0.27 2.68 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.11 1.51 7.95 -52.49 -0.42 1.09 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.10 7.13 -51.93 -0.37 0.73 16 44 H 0.09 1.93 7.97 -52.49 -0.42 1.51 16 45 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 46 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 47 H 0.27 5.95 7.76 -40.82 -0.32 5.63 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -25.58 365.91 -12.33 -37.91 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.98 Total: 13.44 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -5.57 Total: -30.10 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.27 Total: -39.54 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.58 -12.33 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.978 kcal (2) G-P(sol) polarization free energy of solvation -25.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds