Wall clock time and date at job start Tue Mar 31 2020 15:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47143 * 2 1 4 4 C 1.50702 * 109.46733 * 240.00135 * 2 1 3 5 5 C 1.38237 * 119.99842 * 299.72654 * 4 2 1 6 6 C 1.38241 * 119.99835 * 179.75114 * 5 4 2 7 7 C 1.38235 * 119.99877 * 0.54795 * 6 5 4 8 8 C 1.38242 * 120.00077 * 359.70245 * 7 6 5 9 9 C 1.38235 * 120.00040 * 120.00425 * 4 2 1 10 10 C 1.52995 * 109.46914 * 120.00245 * 2 1 3 11 11 H 1.09003 * 110.33548 * 60.70061 * 10 2 1 12 12 C 1.54905 * 110.37423 * 182.95090 * 10 2 1 13 13 C 1.55428 * 101.52108 * 155.94934 * 12 10 2 14 14 C 1.54322 * 103.04969 * 324.36663 * 13 12 10 15 15 N 1.47447 * 107.22949 * 22.28480 * 14 13 12 16 16 C 1.38813 * 110.99923 * 123.25709 * 15 14 13 17 17 C 1.39801 * 119.58743 * 59.15939 * 16 15 14 18 18 C 1.38593 * 119.49232 * 179.97438 * 17 16 15 19 19 C 1.38388 * 118.68277 * 359.97438 * 18 17 16 20 20 C 1.40553 * 119.14618 * 0.02562 * 19 18 17 21 21 C 1.41316 * 119.77944 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00272 * 18.05930 * 21 20 19 23 23 C 1.40030 * 119.99669 * 198.05801 * 21 20 19 24 24 N 1.30738 * 120.00225 * 9.12345 * 23 21 20 25 25 Si 1.86805 * 119.99635 * 189.12722 * 23 21 20 26 26 H 1.48494 * 109.47076 * 90.00045 * 25 23 21 27 27 H 1.48504 * 109.46557 * 209.99760 * 25 23 21 28 28 H 1.48501 * 109.47237 * 329.99553 * 25 23 21 29 29 N 1.31959 * 119.58698 * 238.87971 * 16 15 14 30 30 H 1.08991 * 109.47075 * 300.00306 * 1 2 3 31 31 H 1.09004 * 109.46436 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.00624 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.00162 * 180.27502 * 6 5 4 35 35 H 1.07999 * 120.00263 * 179.72830 * 7 6 5 36 36 H 1.07997 * 120.00269 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.99894 * 359.97438 * 9 4 2 38 38 H 1.08996 * 110.99373 * 274.10117 * 12 10 2 39 39 H 1.09000 * 110.98995 * 37.91756 * 12 10 2 40 40 H 1.09004 * 110.69476 * 205.97503 * 13 12 10 41 41 H 1.08999 * 110.84634 * 82.82959 * 13 12 10 42 42 H 1.09003 * 109.88666 * 262.88541 * 14 13 12 43 43 H 1.08996 * 109.89079 * 141.68787 * 14 13 12 44 44 H 1.08001 * 120.25149 * 0.02562 * 17 16 15 45 45 H 1.07999 * 120.65563 * 180.02562 * 18 17 16 46 46 H 1.08001 * 120.42330 * 179.97438 * 19 18 17 47 47 H 0.96994 * 120.00457 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7029 -2.0355 -1.4464 6 6 2.1594 -2.6857 -2.5778 7 6 2.9545 -2.0140 -3.4875 8 6 3.2882 -0.6904 -3.2690 9 6 2.8271 -0.0386 -2.1404 10 6 2.0400 -0.7213 1.2492 11 1 1.6947 -1.7551 1.2571 12 6 3.5870 -0.6691 1.3083 13 6 3.8456 -0.8440 2.8309 14 6 2.6662 -0.0844 3.4741 15 7 1.5891 -0.0186 2.4694 16 6 0.4164 -0.5763 2.9600 17 6 -0.1696 -0.0472 4.1137 18 6 -1.3407 -0.6052 4.6016 19 6 -1.8978 -1.6767 3.9257 20 6 -1.2610 -2.1636 2.7712 21 6 -1.8185 -3.2568 2.0703 22 1 -2.8513 -3.5299 2.2289 23 6 -1.0318 -3.9859 1.1701 24 7 0.2568 -3.7741 1.1078 25 14 -1.8237 -5.2610 0.0581 26 1 -2.2419 -4.6178 -1.2133 27 1 -0.8460 -6.3406 -0.2315 28 1 -3.0125 -5.8385 0.7352 29 7 -0.1342 -1.5958 2.3285 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.0854 -2.5616 -0.7335 34 1 1.8984 -3.7196 -2.7487 35 1 3.3148 -2.5232 -4.3691 36 1 3.9097 -0.1658 -3.9794 37 1 3.0877 0.9954 -1.9697 38 1 4.0274 -1.4876 0.7389 39 1 3.9589 0.2934 0.9569 40 1 4.7959 -0.3918 3.1147 41 1 3.8233 -1.8975 3.1096 42 1 2.9795 0.9230 3.7484 43 1 2.3175 -0.6200 4.3570 44 1 0.2864 0.7905 4.6205 45 1 -1.8096 -0.2111 5.4911 46 1 -2.8096 -2.1333 4.2814 47 1 0.8018 -4.2793 0.4845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334305082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:03 Heat of formation + Delta-G solvation = 57.090340 kcal Electronic energy + Delta-G solvation = -28540.472803 eV Core-core repulsion = 25073.288757 eV Total energy + Delta-G solvation = -3467.184045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.40212 -40.01017 -38.71002 -35.63565 -35.05914 -33.34668 -32.24990 -31.66574 -30.33091 -29.95888 -28.81583 -27.24774 -24.81638 -23.68051 -23.38370 -23.14748 -21.95907 -21.43278 -20.16009 -19.27877 -18.00836 -17.63859 -16.68959 -16.60169 -16.28272 -16.01244 -15.96264 -15.48903 -14.98285 -14.72690 -14.46128 -14.19989 -14.12778 -14.09553 -13.91458 -13.67647 -13.50894 -13.07948 -13.05678 -12.84438 -12.79979 -12.58089 -12.50305 -12.23541 -12.14877 -12.05815 -11.80888 -11.69307 -11.53673 -11.35904 -11.22396 -11.06798 -10.36369 -9.85823 -9.69956 -9.44693 -9.30978 -8.64483 -8.38493 -6.40741 0.57578 0.62794 0.93194 1.20606 1.39812 1.48510 1.51490 2.22791 2.78467 2.97502 3.16370 3.70896 3.83444 3.96231 4.02524 4.07424 4.18812 4.25291 4.31536 4.38345 4.45152 4.56116 4.61696 4.69061 4.72525 4.77554 4.82110 4.83979 4.86072 4.95240 4.96080 4.99522 5.10148 5.12789 5.18404 5.23448 5.27545 5.28823 5.35539 5.39089 5.58483 5.67079 5.70168 5.73962 5.79734 5.92285 5.96978 6.03737 6.14296 6.26679 6.37019 6.60113 6.85920 7.11875 8.19858 8.46281 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.007099 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.954657 B = 3943.350632 C = 5956.465535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 H 0.073 0.927 4 C -0.073 4.073 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.129 4.129 8 C -0.122 4.122 9 C -0.124 4.124 10 C 0.069 3.931 11 H 0.101 0.899 12 C -0.114 4.114 13 C -0.131 4.131 14 C 0.054 3.946 15 N -0.475 5.475 16 C 0.309 3.691 17 C -0.320 4.320 18 C -0.045 4.045 19 C -0.319 4.319 20 C 0.256 3.744 21 C -0.474 4.474 22 H 0.078 0.922 23 C 0.052 3.948 24 N -0.750 5.750 25 Si 0.960 3.040 26 H -0.268 1.268 27 H -0.266 1.266 28 H -0.261 1.261 29 N -0.514 5.514 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.276 4.216 -6.064 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 H 0.091 0.909 4 C -0.074 4.074 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.038 4.038 11 H 0.119 0.881 12 C -0.152 4.152 13 C -0.169 4.169 14 C -0.073 4.073 15 N -0.194 5.194 16 C 0.071 3.929 17 C -0.344 4.344 18 C -0.070 4.070 19 C -0.342 4.342 20 C 0.129 3.871 21 C -0.506 4.506 22 H 0.096 0.904 23 C -0.170 4.170 24 N -0.373 5.373 25 Si 0.782 3.218 26 H -0.193 1.193 27 H -0.191 1.191 28 H -0.185 1.185 29 N -0.232 5.232 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.131 0.869 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.774 4.330 -6.996 12.776 hybrid contribution -1.281 -1.096 0.947 1.933 sum 8.493 3.234 -6.049 10.917 Atomic orbital electron populations 1.21589 0.95686 1.01330 0.98647 1.19827 0.94735 0.97835 0.91216 0.90879 1.19873 0.97432 0.94039 0.96029 1.21512 1.00186 0.95412 0.98139 1.21327 0.98973 1.00333 0.94771 1.21383 0.98383 0.95297 0.99633 1.21395 1.00182 0.94876 0.97517 1.21269 0.97895 1.00450 0.94569 1.22816 0.93566 0.99781 0.87597 0.88139 1.22712 0.94515 1.02150 0.95863 1.22765 0.98917 0.99810 0.95415 1.22849 0.89913 1.01343 0.93155 1.60646 1.02336 1.50598 1.05803 1.20245 0.93024 0.89308 0.90324 1.21028 1.02317 1.07939 1.03126 1.21064 0.94237 0.93978 0.97710 1.21852 1.05476 1.05167 1.01681 1.18667 0.87858 0.91416 0.89111 1.19661 0.98351 1.11113 1.21453 0.90426 1.26472 0.94893 0.98611 0.97002 1.69922 1.05820 1.33062 1.28488 0.85530 0.79399 0.78043 0.78808 1.19339 1.19087 1.18535 1.68398 1.13382 1.08662 1.32764 0.94916 0.94403 0.93306 0.86565 0.86035 0.83928 0.83404 0.84764 0.91567 0.89883 0.87880 0.93088 0.88588 0.93945 0.86860 0.85538 0.88153 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 7.65 71.98 0.55 -4.35 16 2 C -0.02 -0.63 2.32 -11.54 -0.03 -0.66 16 3 H 0.07 2.48 7.88 -2.39 -0.02 2.46 16 4 C -0.07 -2.46 4.21 -19.86 -0.08 -2.54 16 5 C -0.13 -4.88 8.71 22.27 0.19 -4.68 16 6 C -0.14 -4.13 10.05 22.27 0.22 -3.90 16 7 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 8 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 9 C -0.12 -3.35 9.67 22.27 0.22 -3.13 16 10 C 0.07 2.68 1.71 45.38 0.08 2.76 16 11 H 0.10 4.65 4.79 -2.39 -0.01 4.64 16 12 C -0.11 -3.54 5.94 32.08 0.19 -3.35 16 13 C -0.13 -3.82 6.95 31.88 0.22 -3.60 16 14 C 0.05 1.79 6.42 86.65 0.56 2.35 16 15 N -0.48 -19.00 4.63 -668.07 -3.09 -22.09 16 16 C 0.31 14.51 4.62 133.42 0.62 15.13 16 17 C -0.32 -14.30 9.03 22.73 0.21 -14.10 16 18 C -0.05 -2.02 10.15 22.39 0.23 -1.80 16 19 C -0.32 -15.90 9.83 22.87 0.22 -15.67 16 20 C 0.26 13.85 6.42 40.18 0.26 14.11 16 21 C -0.47 -25.20 9.12 23.46 0.21 -24.99 16 22 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 23 C 0.05 2.57 5.43 85.29 0.46 3.03 16 24 N -0.75 -37.11 9.45 21.84 0.21 -36.90 16 25 Si 0.96 37.88 29.57 68.60 2.03 39.91 16 26 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 27 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 28 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 29 N -0.51 -26.42 4.10 -186.59 -0.77 -27.19 16 30 H 0.03 1.50 6.52 -2.39 -0.02 1.49 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 2.39 6.53 -2.39 -0.02 2.38 16 33 H 0.12 4.94 5.09 -2.91 -0.01 4.93 16 34 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.13 3.04 7.95 -2.91 -0.02 3.02 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 40 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.04 1.55 7.13 -2.39 -0.02 1.54 16 44 H 0.11 4.53 7.97 -2.91 -0.02 4.51 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 47 H 0.28 12.71 7.76 -92.71 -0.72 11.99 16 Total: -1.00 -58.98 365.91 4.16 -54.82 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: 1.01 Total: 42.39 kcal Atomic # 6 Polarization: -55.72 SS G_CDS: 4.78 Total: -50.95 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.65 Total: -86.18 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -58.98 4.16 -54.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.910 kcal (2) G-P(sol) polarization free energy of solvation -58.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds