Wall clock time and date at job start Tue Mar 31 2020 15:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46736 * 2 1 4 4 C 1.50701 * 109.47298 * 120.00111 * 2 1 3 5 5 C 1.38240 * 119.99926 * 36.29662 * 4 2 1 6 6 C 1.38236 * 119.99841 * 179.72587 * 5 4 2 7 7 C 1.38234 * 119.99825 * 0.25867 * 6 5 4 8 8 C 1.38234 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.38228 * 120.00022 * 359.95264 * 8 7 6 10 10 C 1.52996 * 109.47290 * 240.00178 * 2 1 3 11 11 H 1.09001 * 109.91138 * 181.86517 * 10 2 1 12 12 C 1.53993 * 109.91612 * 302.96808 * 10 2 1 13 13 C 1.54596 * 105.14201 * 120.57732 * 12 10 2 14 14 C 1.54939 * 102.92063 * 21.95797 * 13 12 10 15 15 N 1.47908 * 109.91742 * 60.55623 * 10 2 1 16 16 C 1.38815 * 110.99827 * 94.80657 * 15 10 2 17 17 C 1.39800 * 119.58607 * 179.72570 * 16 15 10 18 18 C 1.38595 * 119.48911 * 179.78566 * 17 16 15 19 19 C 1.38388 * 118.68443 * 0.47892 * 18 17 16 20 20 C 1.40552 * 119.14666 * 359.74927 * 19 18 17 21 21 C 1.41316 * 119.78395 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99679 * 9.81093 * 21 20 19 23 23 C 1.40022 * 120.00231 * 189.81372 * 21 20 19 24 24 N 1.30741 * 119.99876 * 8.80839 * 23 21 20 25 25 Si 1.86802 * 120.00266 * 188.80598 * 23 21 20 26 26 H 1.48497 * 109.47218 * 89.99823 * 25 23 21 27 27 H 1.48497 * 109.47140 * 210.00448 * 25 23 21 28 28 H 1.48501 * 109.46897 * 330.00040 * 25 23 21 29 29 N 1.31959 * 119.58684 * 359.97438 * 16 15 10 30 30 H 1.08991 * 109.47144 * 299.99551 * 1 2 3 31 31 H 1.08999 * 109.47057 * 60.00291 * 1 2 3 32 32 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.07994 * 120.00046 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.99705 * 180.28046 * 6 5 4 35 35 H 1.08005 * 119.99441 * 179.97438 * 7 6 5 36 36 H 1.08007 * 119.99908 * 179.97438 * 8 7 6 37 37 H 1.08005 * 120.00222 * 180.02562 * 9 8 7 38 38 H 1.09002 * 110.30896 * 239.49167 * 12 10 2 39 39 H 1.08997 * 110.31346 * 1.66198 * 12 10 2 40 40 H 1.09004 * 110.72791 * 140.31484 * 13 12 10 41 41 H 1.09001 * 110.72561 * 263.42383 * 13 12 10 42 42 H 1.08993 * 110.67001 * 81.01828 * 14 13 12 43 43 H 1.08999 * 110.66868 * 203.98982 * 14 13 12 44 44 H 1.08001 * 120.25006 * 359.97438 * 17 16 15 45 45 H 1.08004 * 120.65869 * 180.22742 * 18 17 16 46 46 H 1.07994 * 120.42411 * 179.72138 * 19 18 17 47 47 H 0.97002 * 120.00415 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.3531 -1.8108 1.7190 6 6 1.8171 -2.4659 2.8444 7 6 2.9574 -2.0174 3.4843 8 6 3.6333 -0.9135 2.9991 9 6 3.1696 -0.2587 1.8736 10 6 2.0400 -0.7212 -1.2492 11 1 3.1295 -0.7543 -1.2399 12 6 1.4721 -2.1517 -1.2977 13 6 0.6775 -2.2261 -2.6217 14 6 1.3044 -1.0884 -3.4663 15 7 1.5635 -0.0239 -2.4634 16 6 2.5147 0.8749 -2.9265 17 6 2.2508 1.6294 -4.0734 18 6 3.2001 2.5294 -4.5315 19 6 4.3927 2.6465 -3.8394 20 6 4.6010 1.8565 -2.6957 21 6 5.8141 1.9648 -1.9791 22 1 6.5094 2.7580 -2.2112 23 6 6.1148 1.0438 -0.9682 24 7 5.3626 -0.0124 -0.8013 25 14 7.5907 1.3242 0.1421 26 1 7.1746 2.1143 1.3285 27 1 8.1330 0.0146 0.5848 28 1 8.6378 2.0666 -0.6047 29 7 3.6588 1.0027 -2.2815 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.4627 -2.1616 1.2186 34 1 1.2890 -3.3283 3.2234 35 1 3.3197 -2.5290 4.3638 36 1 4.5240 -0.5628 3.4994 37 1 3.6979 0.6036 1.4943 38 1 2.2826 -2.8806 -1.3014 39 1 0.8103 -2.3251 -0.4491 40 1 0.8242 -3.1917 -3.1059 41 1 -0.3823 -2.0411 -2.4465 42 1 2.2358 -1.4189 -3.9260 43 1 0.6035 -0.7423 -4.2260 44 1 1.3131 1.5140 -4.5967 45 1 3.0144 3.1245 -5.4134 46 1 5.1538 3.3357 -4.1741 47 1 5.5711 -0.6507 -0.1013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334305096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:08 Heat of formation + Delta-G solvation = 71.141586 kcal Electronic energy + Delta-G solvation = -28365.099434 eV Core-core repulsion = 24898.524696 eV Total energy + Delta-G solvation = -3466.574738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.95204 -38.65833 -37.19160 -34.09499 -33.43003 -31.76837 -30.56187 -30.37045 -29.03762 -28.26564 -27.25660 -25.44150 -23.94795 -22.11225 -21.99314 -21.49765 -20.57188 -20.02836 -18.47526 -17.58804 -16.38155 -15.90860 -15.62328 -14.97233 -14.80871 -14.51604 -14.44211 -14.04157 -13.65923 -13.35371 -13.27710 -12.90965 -12.75161 -12.52964 -12.41676 -12.18551 -11.75764 -11.65491 -11.51961 -11.30454 -11.17153 -11.09703 -10.90348 -10.79380 -10.70985 -10.52939 -10.46999 -10.29009 -10.05862 -9.89467 -9.68752 -9.34121 -8.69221 -8.51275 -8.22333 -8.07004 -7.52251 -6.94896 -6.52697 -4.51288 1.76011 1.80764 2.72234 2.98967 3.07186 3.09249 3.19697 3.92381 4.16996 4.55443 4.79152 5.07642 5.19404 5.26161 5.27730 5.33878 5.47845 5.50716 5.74780 5.79577 5.82985 5.87099 5.95180 5.98970 6.04066 6.08540 6.13518 6.21008 6.25797 6.34923 6.41559 6.44333 6.50801 6.54100 6.62808 6.68399 6.70645 6.78264 6.80417 6.87068 6.94150 6.99984 7.13112 7.21159 7.40461 7.43091 7.46663 7.66003 7.78205 7.86969 8.18289 8.39132 8.70047 8.97775 10.04596 10.27290 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.007262 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.549712 B = 3854.673785 C = 6221.005768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 H 0.079 0.921 4 C -0.054 4.054 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.124 4.124 9 C -0.096 4.096 10 C 0.069 3.931 11 H 0.133 0.867 12 C -0.136 4.136 13 C -0.123 4.123 14 C 0.053 3.947 15 N -0.460 5.460 16 C 0.314 3.686 17 C -0.314 4.314 18 C -0.047 4.047 19 C -0.294 4.294 20 C 0.280 3.720 21 C -0.436 4.436 22 H 0.082 0.918 23 C 0.081 3.919 24 N -0.719 5.719 25 Si 0.898 3.102 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.263 1.263 29 N -0.509 5.509 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 -5.806 4.528 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 H 0.097 0.903 4 C -0.054 4.054 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.114 4.114 10 C -0.038 4.038 11 H 0.151 0.849 12 C -0.174 4.174 13 C -0.161 4.161 14 C -0.074 4.074 15 N -0.179 5.179 16 C 0.076 3.924 17 C -0.339 4.339 18 C -0.071 4.071 19 C -0.317 4.317 20 C 0.153 3.847 21 C -0.468 4.468 22 H 0.100 0.900 23 C -0.145 4.145 24 N -0.341 5.341 25 Si 0.722 3.278 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.187 1.187 29 N -0.226 5.226 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.771 -6.210 5.493 10.705 hybrid contribution 1.231 0.314 -0.456 1.350 sum -5.540 -5.897 5.037 9.531 Atomic orbital electron populations 1.21854 0.95505 1.00937 1.01285 1.19888 0.94690 0.99408 0.90767 0.90274 1.19928 0.94634 0.95082 0.95787 1.21110 1.00301 0.96066 0.96494 1.21004 0.97113 0.99977 0.96589 1.20991 0.96442 0.97520 1.00246 1.21103 0.99706 0.96302 0.97078 1.21198 0.95571 1.00173 0.94481 1.22548 1.03892 0.89490 0.87907 0.84914 1.22706 0.99384 0.97764 0.97561 1.22494 0.99746 0.97647 0.96227 1.23046 0.99459 0.90422 0.94427 1.61783 1.38290 1.13568 1.04278 1.19918 0.88854 0.93014 0.90628 1.20683 1.01637 1.08133 1.03404 1.20719 0.93617 0.95717 0.97052 1.21654 0.99018 1.09221 1.01793 1.18287 0.91440 0.86498 0.88433 1.19514 1.01805 1.11156 1.14288 0.90037 1.25904 0.97146 0.94269 0.97134 1.69882 1.32635 1.06394 1.25175 0.86472 0.81842 0.78696 0.80742 1.19310 1.20213 1.18713 1.68438 0.99152 1.22659 1.32357 0.94082 0.91453 0.93188 0.86188 0.86930 0.87021 0.86827 0.85706 0.92218 0.90792 0.91787 0.91286 0.93602 0.90573 0.88821 0.88718 0.88586 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.23 37.16 0.31 -1.86 16 2 C -0.03 -0.52 2.65 -91.77 -0.24 -0.76 16 3 H 0.08 1.70 8.04 -51.93 -0.42 1.29 16 4 C -0.05 -0.91 4.69 -104.62 -0.49 -1.41 16 5 C -0.12 -1.80 7.88 -39.58 -0.31 -2.11 16 6 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 7 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 8 C -0.12 -1.92 10.05 -39.59 -0.40 -2.31 16 9 C -0.10 -1.70 9.68 -39.59 -0.38 -2.08 16 10 C 0.07 1.33 1.91 -66.64 -0.13 1.20 16 11 H 0.13 3.06 5.16 -51.93 -0.27 2.79 16 12 C -0.14 -2.18 5.44 -25.37 -0.14 -2.32 16 13 C -0.12 -1.77 7.06 -24.87 -0.18 -1.95 16 14 C 0.05 0.92 6.03 -1.90 -0.01 0.91 16 15 N -0.46 -9.20 4.21 -161.75 -0.68 -9.88 16 16 C 0.31 7.38 6.22 -155.33 -0.97 6.41 16 17 C -0.31 -7.11 9.47 -38.87 -0.37 -7.48 16 18 C -0.05 -1.05 10.15 -39.39 -0.40 -1.45 16 19 C -0.29 -7.18 9.83 -38.65 -0.38 -7.56 16 20 C 0.28 7.38 6.50 -85.00 -0.55 6.83 16 21 C -0.44 -11.22 9.12 -37.74 -0.34 -11.56 16 22 H 0.08 2.01 7.86 -52.48 -0.41 1.60 16 23 C 0.08 1.94 5.45 -17.35 -0.09 1.84 16 24 N -0.72 -17.44 10.35 55.55 0.58 -16.87 16 25 Si 0.90 18.08 29.57 -169.99 -5.03 13.06 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 28 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 29 N -0.51 -13.00 5.96 -10.33 -0.06 -13.06 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.12 7.64 -51.93 -0.40 0.72 16 32 H 0.05 0.69 5.08 -51.93 -0.26 0.43 16 33 H 0.12 1.59 5.06 -52.49 -0.27 1.32 16 34 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.07 3.49 -51.93 -0.18 0.89 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.87 7.99 -51.93 -0.42 0.46 16 43 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 44 H 0.09 1.94 8.02 -52.49 -0.42 1.52 16 45 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 47 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -26.53 367.56 -12.36 -38.89 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.83 Total: 12.38 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -5.87 Total: -30.05 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.17 Total: -39.82 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.53 -12.36 -38.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.029 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds