Wall clock time and date at job start Tue Mar 31 2020 15:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46736 * 2 1 4 4 C 1.50701 * 109.47298 * 120.00111 * 2 1 3 5 5 C 1.38240 * 119.99926 * 36.29662 * 4 2 1 6 6 C 1.38236 * 119.99841 * 179.72587 * 5 4 2 7 7 C 1.38234 * 119.99825 * 0.25867 * 6 5 4 8 8 C 1.38234 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.38228 * 120.00022 * 359.95264 * 8 7 6 10 10 C 1.52996 * 109.47290 * 240.00178 * 2 1 3 11 11 H 1.09001 * 109.91138 * 181.86517 * 10 2 1 12 12 C 1.53993 * 109.91612 * 302.96808 * 10 2 1 13 13 C 1.54596 * 105.14201 * 120.57732 * 12 10 2 14 14 C 1.54939 * 102.92063 * 21.95797 * 13 12 10 15 15 N 1.47908 * 109.91742 * 60.55623 * 10 2 1 16 16 C 1.38815 * 110.99827 * 94.80657 * 15 10 2 17 17 C 1.39800 * 119.58607 * 179.72570 * 16 15 10 18 18 C 1.38595 * 119.48911 * 179.78566 * 17 16 15 19 19 C 1.38388 * 118.68443 * 0.47892 * 18 17 16 20 20 C 1.40552 * 119.14666 * 359.74927 * 19 18 17 21 21 C 1.41316 * 119.78395 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99679 * 9.81093 * 21 20 19 23 23 C 1.40022 * 120.00231 * 189.81372 * 21 20 19 24 24 N 1.30741 * 119.99876 * 8.80839 * 23 21 20 25 25 Si 1.86802 * 120.00266 * 188.80598 * 23 21 20 26 26 H 1.48497 * 109.47218 * 89.99823 * 25 23 21 27 27 H 1.48497 * 109.47140 * 210.00448 * 25 23 21 28 28 H 1.48501 * 109.46897 * 330.00040 * 25 23 21 29 29 N 1.31959 * 119.58684 * 359.97438 * 16 15 10 30 30 H 1.08991 * 109.47144 * 299.99551 * 1 2 3 31 31 H 1.08999 * 109.47057 * 60.00291 * 1 2 3 32 32 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.07994 * 120.00046 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.99705 * 180.28046 * 6 5 4 35 35 H 1.08005 * 119.99441 * 179.97438 * 7 6 5 36 36 H 1.08007 * 119.99908 * 179.97438 * 8 7 6 37 37 H 1.08005 * 120.00222 * 180.02562 * 9 8 7 38 38 H 1.09002 * 110.30896 * 239.49167 * 12 10 2 39 39 H 1.08997 * 110.31346 * 1.66198 * 12 10 2 40 40 H 1.09004 * 110.72791 * 140.31484 * 13 12 10 41 41 H 1.09001 * 110.72561 * 263.42383 * 13 12 10 42 42 H 1.08993 * 110.67001 * 81.01828 * 14 13 12 43 43 H 1.08999 * 110.66868 * 203.98982 * 14 13 12 44 44 H 1.08001 * 120.25006 * 359.97438 * 17 16 15 45 45 H 1.08004 * 120.65869 * 180.22742 * 18 17 16 46 46 H 1.07994 * 120.42411 * 179.72138 * 19 18 17 47 47 H 0.97002 * 120.00415 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.3531 -1.8108 1.7190 6 6 1.8171 -2.4659 2.8444 7 6 2.9574 -2.0174 3.4843 8 6 3.6333 -0.9135 2.9991 9 6 3.1696 -0.2587 1.8736 10 6 2.0400 -0.7212 -1.2492 11 1 3.1295 -0.7543 -1.2399 12 6 1.4721 -2.1517 -1.2977 13 6 0.6775 -2.2261 -2.6217 14 6 1.3044 -1.0884 -3.4663 15 7 1.5635 -0.0239 -2.4634 16 6 2.5147 0.8749 -2.9265 17 6 2.2508 1.6294 -4.0734 18 6 3.2001 2.5294 -4.5315 19 6 4.3927 2.6465 -3.8394 20 6 4.6010 1.8565 -2.6957 21 6 5.8141 1.9648 -1.9791 22 1 6.5094 2.7580 -2.2112 23 6 6.1148 1.0438 -0.9682 24 7 5.3626 -0.0124 -0.8013 25 14 7.5907 1.3242 0.1421 26 1 7.1746 2.1143 1.3285 27 1 8.1330 0.0146 0.5848 28 1 8.6378 2.0666 -0.6047 29 7 3.6588 1.0027 -2.2815 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.4627 -2.1616 1.2186 34 1 1.2890 -3.3283 3.2234 35 1 3.3197 -2.5290 4.3638 36 1 4.5240 -0.5628 3.4994 37 1 3.6979 0.6036 1.4943 38 1 2.2826 -2.8806 -1.3014 39 1 0.8103 -2.3251 -0.4491 40 1 0.8242 -3.1917 -3.1059 41 1 -0.3823 -2.0411 -2.4465 42 1 2.2358 -1.4189 -3.9260 43 1 0.6035 -0.7423 -4.2260 44 1 1.3131 1.5140 -4.5967 45 1 3.0144 3.1245 -5.4134 46 1 5.1538 3.3357 -4.1741 47 1 5.5711 -0.6507 -0.1013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334305096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:07 Heat of formation + Delta-G solvation = 60.988257 kcal Electronic energy + Delta-G solvation = -28365.539716 eV Core-core repulsion = 24898.524696 eV Total energy + Delta-G solvation = -3467.015019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.41814 -40.09364 -38.77528 -35.69173 -35.01854 -33.32037 -32.24220 -31.71498 -30.29930 -29.96878 -28.63635 -27.27176 -25.26518 -23.61157 -23.39550 -23.11804 -21.89192 -21.57953 -19.94428 -19.40097 -17.71067 -17.46826 -16.99515 -16.59410 -16.26259 -16.15514 -15.97895 -15.53133 -15.06932 -14.93854 -14.66944 -14.31546 -14.22470 -13.94493 -13.85171 -13.54634 -13.21797 -13.15841 -12.96988 -12.85382 -12.78401 -12.58680 -12.45356 -12.31500 -12.20107 -12.00436 -11.81579 -11.73922 -11.55921 -11.21007 -11.17099 -11.08334 -10.40488 -9.93679 -9.69615 -9.45672 -9.36286 -8.71420 -8.35265 -6.45318 0.57770 0.61352 0.90624 1.18635 1.36659 1.47230 1.49383 2.20195 2.78531 2.96143 3.20397 3.73535 3.84388 3.97129 4.06161 4.06253 4.20799 4.26062 4.32700 4.35782 4.43061 4.49789 4.59567 4.64032 4.67131 4.71989 4.78935 4.83164 4.87186 4.93803 4.99463 5.05047 5.11530 5.13909 5.21939 5.24669 5.26380 5.30106 5.38341 5.42714 5.46592 5.67046 5.70116 5.72136 5.78687 5.90861 5.94004 6.00095 6.10787 6.24936 6.33001 6.57041 6.81709 7.09017 8.18211 8.43627 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.007262 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.549712 B = 3854.673785 C = 6221.005768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.020 4.020 3 H 0.026 0.974 4 C -0.070 4.070 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.123 4.123 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.129 4.129 13 C -0.109 4.109 14 C 0.048 3.952 15 N -0.458 5.458 16 C 0.299 3.701 17 C -0.320 4.320 18 C -0.044 4.044 19 C -0.322 4.322 20 C 0.246 3.754 21 C -0.470 4.470 22 H 0.080 0.920 23 C 0.041 3.959 24 N -0.732 5.732 25 Si 0.966 3.034 26 H -0.267 1.267 27 H -0.267 1.267 28 H -0.259 1.259 29 N -0.526 5.526 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.021 0.979 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.129 0.871 46 H 0.102 0.898 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -8.381 5.712 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.039 4.039 3 H 0.044 0.956 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.142 4.142 10 C -0.041 4.041 11 H 0.110 0.890 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.078 4.078 15 N -0.177 5.177 16 C 0.061 3.939 17 C -0.345 4.345 18 C -0.069 4.069 19 C -0.345 4.345 20 C 0.120 3.880 21 C -0.502 4.502 22 H 0.098 0.902 23 C -0.182 4.182 24 N -0.353 5.353 25 Si 0.788 3.212 26 H -0.192 1.192 27 H -0.192 1.192 28 H -0.183 1.183 29 N -0.244 5.244 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.039 0.961 43 H 0.111 0.889 44 H 0.134 0.866 45 H 0.147 0.853 46 H 0.120 0.880 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.745 -8.788 6.657 14.072 hybrid contribution 1.783 1.107 -0.830 2.257 sum -6.962 -7.681 5.828 11.893 Atomic orbital electron populations 1.21762 0.93181 1.02472 1.01067 1.19700 0.96403 0.96505 0.91305 0.95573 1.19880 0.95092 0.96456 0.95630 1.21301 1.00551 0.94971 0.96993 1.21449 0.96649 1.00337 0.95440 1.21370 0.96094 0.96408 1.00866 1.21265 1.00367 0.97028 0.96447 1.21026 0.96620 1.00172 0.96333 1.22456 1.01919 0.91750 0.87999 0.88963 1.22648 0.99628 0.94884 0.99552 1.22500 1.00347 0.97452 0.94375 1.23191 0.98974 0.90874 0.94770 1.61861 1.36549 1.14050 1.05254 1.20436 0.88903 0.93782 0.90800 1.21015 1.02485 1.07731 1.03244 1.21084 0.92627 0.95514 0.97625 1.21810 1.00430 1.10043 1.02176 1.18750 0.92248 0.87502 0.89519 1.19770 1.02269 1.12163 1.15968 0.90185 1.26624 0.99833 0.93805 0.97987 1.69986 1.33445 1.06650 1.25234 0.85439 0.78376 0.78834 0.78580 1.19223 1.19170 1.18315 1.68479 0.99881 1.22893 1.33126 0.93370 0.92624 0.90545 0.84053 0.83144 0.83828 0.86011 0.89633 0.93074 0.88629 0.89323 0.88904 0.96085 0.88862 0.86597 0.85304 0.88025 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.23 71.98 0.59 -3.25 16 2 C -0.02 -0.75 2.65 -11.54 -0.03 -0.78 16 3 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 4 C -0.07 -2.41 4.69 -19.86 -0.09 -2.50 16 5 C -0.12 -3.23 7.88 22.27 0.18 -3.06 16 6 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 7 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 8 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 9 C -0.12 -4.59 9.68 22.27 0.22 -4.37 16 10 C 0.07 2.61 1.91 45.06 0.09 2.70 16 11 H 0.09 4.49 5.16 -2.39 -0.01 4.48 16 12 C -0.13 -3.91 5.44 31.47 0.17 -3.74 16 13 C -0.11 -2.80 7.06 31.80 0.22 -2.57 16 14 C 0.05 1.62 6.03 86.65 0.52 2.14 16 15 N -0.46 -18.57 4.21 -665.65 -2.80 -21.38 16 16 C 0.30 14.61 6.22 133.42 0.83 15.44 16 17 C -0.32 -14.66 9.47 22.73 0.22 -14.45 16 18 C -0.04 -2.01 10.15 22.39 0.23 -1.78 16 19 C -0.32 -16.46 9.83 22.87 0.22 -16.23 16 20 C 0.25 13.82 6.50 40.18 0.26 14.08 16 21 C -0.47 -25.80 9.12 23.46 0.21 -25.58 16 22 H 0.08 4.21 7.86 -2.91 -0.02 4.19 16 23 C 0.04 2.08 5.45 85.29 0.47 2.55 16 24 N -0.73 -37.74 10.35 21.84 0.23 -37.51 16 25 Si 0.97 38.79 29.57 68.60 2.03 40.82 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 28 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 29 N -0.53 -28.60 5.96 -186.59 -1.11 -29.72 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.79 7.64 -2.39 -0.02 1.77 16 32 H 0.08 1.86 5.08 -2.39 -0.01 1.85 16 33 H 0.14 3.11 5.06 -2.91 -0.01 3.10 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.09 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 2.44 3.49 -2.39 -0.01 2.43 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 43 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 44 H 0.12 4.69 8.02 -2.91 -0.02 4.66 16 45 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 46 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 47 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 Total: -1.00 -63.36 367.56 4.27 -59.08 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.96 Total: 39.54 kcal Atomic # 6 Polarization: -55.80 SS G_CDS: 4.97 Total: -50.83 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -3.69 Total: -88.61 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -63.36 4.27 -59.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.073 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds