Wall clock time and date at job start Tue Mar 31 2020 15:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46826 * 2 1 4 4 C 1.50693 * 109.47343 * 240.00270 * 2 1 3 5 5 C 1.38240 * 120.00064 * 299.72047 * 4 2 1 6 6 C 1.38236 * 120.00285 * 179.76606 * 5 4 2 7 7 C 1.38229 * 119.99873 * 0.51293 * 6 5 4 8 8 C 1.38236 * 120.00006 * 359.74518 * 7 6 5 9 9 C 1.38231 * 120.00631 * 120.00029 * 4 2 1 10 10 C 1.52999 * 109.47046 * 119.99661 * 2 1 3 11 11 H 1.09004 * 110.72345 * 62.98344 * 10 2 1 12 12 C 1.54936 * 110.66864 * 299.88835 * 10 2 1 13 13 C 1.54600 * 102.92061 * 204.15198 * 12 10 2 14 14 C 1.53992 * 105.14113 * 21.95412 * 13 12 10 15 15 N 1.47909 * 107.05871 * 1.22775 * 14 13 12 16 16 C 1.38813 * 110.99990 * 214.15672 * 15 14 13 17 17 C 1.39799 * 119.58865 * 59.59436 * 16 15 14 18 18 C 1.38594 * 119.49211 * 179.76511 * 17 16 15 19 19 C 1.38393 * 118.67906 * 0.50738 * 18 17 16 20 20 C 1.40549 * 119.14925 * 359.73973 * 19 18 17 21 21 C 1.41324 * 119.78080 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99976 * 357.81752 * 21 20 19 23 23 C 1.40027 * 119.99583 * 177.81827 * 21 20 19 24 24 N 1.30740 * 120.00264 * 8.46419 * 23 21 20 25 25 Si 1.86798 * 119.99721 * 188.46399 * 23 21 20 26 26 H 1.48500 * 109.47100 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47086 * 119.99852 * 25 23 21 28 28 H 1.48497 * 109.47222 * 239.99986 * 25 23 21 29 29 N 1.31961 * 119.58400 * 239.87068 * 16 15 14 30 30 H 1.09003 * 109.47369 * 57.92460 * 1 2 3 31 31 H 1.09004 * 109.47154 * 177.92404 * 1 2 3 32 32 H 1.08995 * 109.47754 * 297.92099 * 1 2 3 33 33 H 1.08003 * 119.99623 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.00144 * 180.23481 * 6 5 4 35 35 H 1.07996 * 120.00124 * 179.72159 * 7 6 5 36 36 H 1.08006 * 120.00077 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.99544 * 359.97438 * 9 4 2 38 38 H 1.08994 * 110.72630 * 85.79266 * 12 10 2 39 39 H 1.09004 * 110.72524 * 322.50179 * 12 10 2 40 40 H 1.08998 * 110.30501 * 263.03925 * 13 12 10 41 41 H 1.08997 * 110.30859 * 140.87130 * 13 12 10 42 42 H 1.09001 * 109.92342 * 241.87392 * 14 13 12 43 43 H 1.08996 * 110.08140 * 120.66725 * 14 13 12 44 44 H 1.08001 * 120.25289 * 0.02562 * 17 16 15 45 45 H 1.08003 * 120.66140 * 180.24724 * 18 17 16 46 46 H 1.08000 * 120.42199 * 179.76546 * 19 18 17 47 47 H 0.96998 * 120.00117 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 1.7032 -2.0355 -1.4464 6 6 2.1600 -2.6857 -2.5775 7 6 2.9547 -2.0139 -3.4873 8 6 3.2883 -0.6903 -3.2688 9 6 2.8271 -0.0386 -2.1404 10 6 2.0399 -0.7212 1.2493 11 1 1.7319 -1.7668 1.2438 12 6 1.5412 -0.0108 2.5327 13 6 2.5906 -0.4277 3.5886 14 6 3.8396 -0.8239 2.7797 15 7 3.5176 -0.6105 1.3519 16 6 4.1440 -1.5578 0.5537 17 6 3.8727 -2.9150 0.7509 18 6 4.4955 -3.8588 -0.0504 19 6 5.3814 -3.4252 -1.0212 20 6 5.6166 -2.0472 -1.1671 21 6 6.5182 -1.5897 -2.1545 22 1 7.0506 -2.2995 -2.7702 23 6 6.7214 -0.2159 -2.3344 24 7 6.2089 0.6373 -1.4866 25 14 7.7246 0.3976 -3.7857 26 1 8.1906 -0.7604 -4.5902 27 1 6.8826 1.2816 -4.6312 28 1 8.8987 1.1592 -3.2893 29 7 4.9924 -1.1663 -0.3781 30 1 -0.3634 0.5457 -0.8708 31 1 -0.3634 -1.0270 -0.0372 32 1 -0.3634 0.4812 0.9080 33 1 1.0856 -2.5615 -0.7334 34 1 1.8997 -3.7199 -2.7480 35 1 3.3153 -2.5232 -4.3688 36 1 3.9096 -0.1655 -3.9795 37 1 3.0876 0.9955 -1.9696 38 1 0.5502 -0.3690 2.8115 39 1 1.5379 1.0709 2.3984 40 1 2.2287 -1.2780 4.1665 41 1 2.8171 0.4101 4.2481 42 1 4.0775 -1.8733 2.9538 43 1 4.6853 -0.1991 3.0669 44 1 3.1797 -3.2253 1.5190 45 1 4.2967 -4.9119 0.0828 46 1 5.8853 -4.1366 -1.6587 47 1 6.3493 1.5889 -1.6115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334305097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:11 Heat of formation + Delta-G solvation = 76.315260 kcal Electronic energy + Delta-G solvation = -29290.762782 eV Core-core repulsion = 25824.412392 eV Total energy + Delta-G solvation = -3466.350390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.91661 -37.96685 -37.25559 -33.92322 -33.48147 -31.73373 -30.32508 -29.90934 -28.93660 -28.25987 -27.29813 -25.27510 -23.47013 -22.15655 -21.68813 -21.26015 -20.42134 -19.93661 -18.92150 -17.31759 -16.40998 -16.00248 -15.08687 -14.86079 -14.62899 -14.38398 -14.18271 -14.00056 -13.51639 -13.28585 -13.13163 -12.73383 -12.52143 -12.41867 -12.27975 -11.96962 -11.85007 -11.66195 -11.54131 -11.29964 -11.08585 -10.97898 -10.85502 -10.75563 -10.60154 -10.57832 -10.42936 -10.26535 -9.96430 -9.90712 -9.81267 -9.23416 -8.17394 -8.10502 -7.88158 -7.69079 -7.21637 -7.12193 -6.24401 -4.37903 2.30587 2.41066 2.77686 3.10611 3.12838 3.15753 3.28240 4.00643 4.47332 4.70375 4.78308 4.98908 5.14819 5.29712 5.38047 5.48912 5.69671 5.77054 5.78552 5.80951 5.88913 5.95370 5.97613 6.05195 6.08960 6.11576 6.14734 6.16630 6.32360 6.33527 6.39514 6.46267 6.50209 6.53660 6.55805 6.69479 6.83937 6.92814 6.94327 6.98439 7.03035 7.32259 7.36698 7.46861 7.55914 7.62111 7.67454 7.79664 7.89604 7.95886 8.31884 8.44775 8.83474 9.09599 10.27937 10.43629 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.006350 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.672136 B = 4408.392454 C = 4808.129865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 H 0.081 0.919 4 C -0.069 4.069 5 C -0.107 4.107 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.096 4.096 9 C -0.064 4.064 10 C 0.088 3.912 11 H 0.055 0.945 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.048 3.952 15 N -0.461 5.461 16 C 0.324 3.676 17 C -0.340 4.340 18 C -0.048 4.048 19 C -0.283 4.283 20 C 0.277 3.723 21 C -0.428 4.428 22 H 0.077 0.923 23 C 0.078 3.922 24 N -0.697 5.697 25 Si 0.888 3.112 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.276 1.276 29 N -0.441 5.441 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 0.325 2.923 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.052 4.052 3 H 0.099 0.901 4 C -0.069 4.069 5 C -0.125 4.125 6 C -0.140 4.140 7 C -0.133 4.133 8 C -0.114 4.114 9 C -0.082 4.082 10 C -0.020 4.020 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.166 4.166 14 C -0.080 4.080 15 N -0.183 5.183 16 C 0.085 3.915 17 C -0.366 4.366 18 C -0.072 4.072 19 C -0.306 4.306 20 C 0.151 3.849 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.148 4.148 24 N -0.317 5.317 25 Si 0.713 3.287 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.201 1.201 29 N -0.153 5.153 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.818 1.960 2.638 9.410 hybrid contribution 0.370 -1.733 -0.239 1.788 sum -8.447 0.227 2.399 8.784 Atomic orbital electron populations 1.21843 0.95117 1.01585 1.01266 1.19984 0.93987 0.99573 0.91666 0.90072 1.19455 0.98343 0.93941 0.95193 1.20574 1.00933 0.94195 0.96815 1.20728 0.99548 0.98472 0.95297 1.20811 0.98483 0.94804 0.99240 1.20775 0.98120 0.94698 0.97798 1.20661 0.94970 0.99511 0.93050 1.22748 0.87714 0.97819 0.93755 0.92747 1.22527 0.97596 1.01026 0.94447 1.22375 0.95693 1.00763 0.97798 1.22797 0.97588 1.00055 0.87586 1.61347 1.04649 1.48226 1.04043 1.19547 0.93127 0.85917 0.92930 1.21394 1.11919 0.95200 1.08126 1.20561 0.95392 0.96498 0.94796 1.21623 1.07217 0.97146 1.04624 1.18269 0.89929 0.86568 0.90129 1.19481 1.20138 0.91793 1.14499 0.90479 1.25908 0.95320 0.97230 0.96376 1.70173 1.29586 1.02471 1.29489 0.86582 0.80209 0.79622 0.82331 1.18624 1.19852 1.20108 1.68387 1.07375 1.35531 1.04040 0.92732 0.92923 0.92677 0.88188 0.87988 0.87754 0.87752 0.87358 0.91570 0.90781 0.92064 0.91401 0.93612 0.90844 0.90108 0.89719 0.89218 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.85 37.16 0.33 -1.52 16 2 C -0.03 -0.55 2.33 -91.78 -0.21 -0.77 16 3 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 4 C -0.07 -1.31 3.00 -104.63 -0.31 -1.63 16 5 C -0.11 -2.00 7.38 -39.58 -0.29 -2.29 16 6 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 7 C -0.12 -2.25 10.05 -39.59 -0.40 -2.65 16 8 C -0.10 -1.96 10.05 -39.58 -0.40 -2.36 16 9 C -0.06 -1.31 8.56 -39.59 -0.34 -1.65 16 10 C 0.09 1.48 1.77 -65.79 -0.12 1.36 16 11 H 0.05 0.98 5.85 -51.93 -0.30 0.68 16 12 C -0.12 -1.60 5.37 -24.87 -0.13 -1.73 16 13 C -0.13 -1.74 6.93 -25.37 -0.18 -1.92 16 14 C 0.05 0.84 6.49 -2.75 -0.02 0.83 16 15 N -0.46 -9.34 5.06 -161.80 -0.82 -10.16 16 16 C 0.32 7.45 3.71 -155.33 -0.58 6.87 16 17 C -0.34 -7.57 7.04 -38.87 -0.27 -7.84 16 18 C -0.05 -1.08 10.15 -39.39 -0.40 -1.48 16 19 C -0.28 -6.91 9.83 -38.65 -0.38 -7.29 16 20 C 0.28 7.18 6.55 -85.00 -0.56 6.62 16 21 C -0.43 -11.03 9.13 -37.74 -0.34 -11.38 16 22 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 23 C 0.08 1.90 5.48 -17.35 -0.10 1.81 16 24 N -0.70 -17.59 11.50 55.55 0.64 -16.95 16 25 Si 0.89 18.34 29.57 -169.99 -5.03 13.31 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 29 N -0.44 -11.23 6.68 -10.33 -0.07 -11.30 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.68 7.34 -51.93 -0.38 0.30 16 32 H 0.05 0.62 7.09 -51.93 -0.37 0.25 16 33 H 0.10 1.76 7.11 -52.48 -0.37 1.39 16 34 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.11 2.30 7.95 -52.48 -0.42 1.88 16 38 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 39 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.85 6.63 -51.93 -0.34 0.50 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.69 7.03 -52.49 -0.37 1.32 16 45 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 46 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 47 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -27.63 368.75 -11.96 -39.59 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.15 Total: 9.67 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -5.09 Total: -29.72 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.25 Total: -38.40 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.63 -11.96 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.906 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds