Wall clock time and date at job start Tue Mar 31 2020 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46826 * 2 1 4 4 C 1.50693 * 109.47343 * 240.00270 * 2 1 3 5 5 C 1.38240 * 120.00064 * 299.72047 * 4 2 1 6 6 C 1.38236 * 120.00285 * 179.76606 * 5 4 2 7 7 C 1.38229 * 119.99873 * 0.51293 * 6 5 4 8 8 C 1.38236 * 120.00006 * 359.74518 * 7 6 5 9 9 C 1.38231 * 120.00631 * 120.00029 * 4 2 1 10 10 C 1.52999 * 109.47046 * 119.99661 * 2 1 3 11 11 H 1.09004 * 110.72345 * 62.98344 * 10 2 1 12 12 C 1.54936 * 110.66864 * 299.88835 * 10 2 1 13 13 C 1.54600 * 102.92061 * 204.15198 * 12 10 2 14 14 C 1.53992 * 105.14113 * 21.95412 * 13 12 10 15 15 N 1.47909 * 107.05871 * 1.22775 * 14 13 12 16 16 C 1.38813 * 110.99990 * 214.15672 * 15 14 13 17 17 C 1.39799 * 119.58865 * 59.59436 * 16 15 14 18 18 C 1.38594 * 119.49211 * 179.76511 * 17 16 15 19 19 C 1.38393 * 118.67906 * 0.50738 * 18 17 16 20 20 C 1.40549 * 119.14925 * 359.73973 * 19 18 17 21 21 C 1.41324 * 119.78080 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99976 * 357.81752 * 21 20 19 23 23 C 1.40027 * 119.99583 * 177.81827 * 21 20 19 24 24 N 1.30740 * 120.00264 * 8.46419 * 23 21 20 25 25 Si 1.86798 * 119.99721 * 188.46399 * 23 21 20 26 26 H 1.48500 * 109.47100 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47086 * 119.99852 * 25 23 21 28 28 H 1.48497 * 109.47222 * 239.99986 * 25 23 21 29 29 N 1.31961 * 119.58400 * 239.87068 * 16 15 14 30 30 H 1.09003 * 109.47369 * 57.92460 * 1 2 3 31 31 H 1.09004 * 109.47154 * 177.92404 * 1 2 3 32 32 H 1.08995 * 109.47754 * 297.92099 * 1 2 3 33 33 H 1.08003 * 119.99623 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.00144 * 180.23481 * 6 5 4 35 35 H 1.07996 * 120.00124 * 179.72159 * 7 6 5 36 36 H 1.08006 * 120.00077 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.99544 * 359.97438 * 9 4 2 38 38 H 1.08994 * 110.72630 * 85.79266 * 12 10 2 39 39 H 1.09004 * 110.72524 * 322.50179 * 12 10 2 40 40 H 1.08998 * 110.30501 * 263.03925 * 13 12 10 41 41 H 1.08997 * 110.30859 * 140.87130 * 13 12 10 42 42 H 1.09001 * 109.92342 * 241.87392 * 14 13 12 43 43 H 1.08996 * 110.08140 * 120.66725 * 14 13 12 44 44 H 1.08001 * 120.25289 * 0.02562 * 17 16 15 45 45 H 1.08003 * 120.66140 * 180.24724 * 18 17 16 46 46 H 1.08000 * 120.42199 * 179.76546 * 19 18 17 47 47 H 0.96998 * 120.00117 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 1.7032 -2.0355 -1.4464 6 6 2.1600 -2.6857 -2.5775 7 6 2.9547 -2.0139 -3.4873 8 6 3.2883 -0.6903 -3.2688 9 6 2.8271 -0.0386 -2.1404 10 6 2.0399 -0.7212 1.2493 11 1 1.7319 -1.7668 1.2438 12 6 1.5412 -0.0108 2.5327 13 6 2.5906 -0.4277 3.5886 14 6 3.8396 -0.8239 2.7797 15 7 3.5176 -0.6105 1.3519 16 6 4.1440 -1.5578 0.5537 17 6 3.8727 -2.9150 0.7509 18 6 4.4955 -3.8588 -0.0504 19 6 5.3814 -3.4252 -1.0212 20 6 5.6166 -2.0472 -1.1671 21 6 6.5182 -1.5897 -2.1545 22 1 7.0506 -2.2995 -2.7702 23 6 6.7214 -0.2159 -2.3344 24 7 6.2089 0.6373 -1.4866 25 14 7.7246 0.3976 -3.7857 26 1 8.1906 -0.7604 -4.5902 27 1 6.8826 1.2816 -4.6312 28 1 8.8987 1.1592 -3.2893 29 7 4.9924 -1.1663 -0.3781 30 1 -0.3634 0.5457 -0.8708 31 1 -0.3634 -1.0270 -0.0372 32 1 -0.3634 0.4812 0.9080 33 1 1.0856 -2.5615 -0.7334 34 1 1.8997 -3.7199 -2.7480 35 1 3.3153 -2.5232 -4.3688 36 1 3.9096 -0.1655 -3.9795 37 1 3.0876 0.9955 -1.9696 38 1 0.5502 -0.3690 2.8115 39 1 1.5379 1.0709 2.3984 40 1 2.2287 -1.2780 4.1665 41 1 2.8171 0.4101 4.2481 42 1 4.0775 -1.8733 2.9538 43 1 4.6853 -0.1991 3.0669 44 1 3.1797 -3.2253 1.5190 45 1 4.2967 -4.9119 0.0828 46 1 5.8853 -4.1366 -1.6587 47 1 6.3493 1.5889 -1.6115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334305097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:10 Heat of formation + Delta-G solvation = 64.479116 kcal Electronic energy + Delta-G solvation = -29291.276036 eV Core-core repulsion = 25824.412392 eV Total energy + Delta-G solvation = -3466.863644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41180 -39.52270 -38.88129 -35.46354 -35.10717 -33.24969 -32.12938 -31.46737 -30.36156 -29.94752 -28.50256 -27.11683 -24.78660 -23.69114 -23.23834 -23.05498 -21.79280 -21.40593 -20.36519 -19.12098 -17.95412 -17.55315 -16.57300 -16.45149 -16.25883 -15.99166 -15.72328 -15.60407 -14.95414 -14.91235 -14.51705 -14.11413 -14.05512 -13.90829 -13.80853 -13.45525 -13.29042 -13.01972 -12.94957 -12.78681 -12.69310 -12.48026 -12.39990 -12.27602 -12.16441 -12.01109 -11.92909 -11.68419 -11.53554 -11.30258 -11.16785 -11.04022 -9.92634 -9.77413 -9.47665 -9.32452 -8.93970 -8.84312 -8.07187 -6.31203 0.78110 0.85893 1.00838 1.35236 1.40855 1.50665 1.53717 2.26147 2.95893 3.05499 3.19105 3.72129 3.88389 4.02510 4.14460 4.18126 4.24495 4.32830 4.38067 4.43515 4.44215 4.47536 4.59435 4.66723 4.72085 4.77122 4.85192 4.92995 4.98129 4.99398 5.03697 5.05356 5.10451 5.12663 5.17790 5.22891 5.33397 5.37921 5.41561 5.45599 5.48466 5.51903 5.82097 5.84426 5.92296 5.99540 6.04911 6.10389 6.21974 6.39563 6.44246 6.67785 6.98276 7.24134 8.45311 8.60366 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.006350 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.672136 B = 4408.392454 C = 4808.129865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 H 0.063 0.937 4 C -0.068 4.068 5 C -0.110 4.110 6 C -0.125 4.125 7 C -0.127 4.127 8 C -0.107 4.107 9 C -0.080 4.080 10 C 0.089 3.911 11 H 0.049 0.951 12 C -0.109 4.109 13 C -0.117 4.117 14 C 0.043 3.957 15 N -0.485 5.485 16 C 0.324 3.676 17 C -0.335 4.335 18 C -0.047 4.047 19 C -0.306 4.306 20 C 0.261 3.739 21 C -0.459 4.459 22 H 0.071 0.929 23 C 0.048 3.952 24 N -0.725 5.725 25 Si 0.952 3.048 26 H -0.262 1.262 27 H -0.268 1.268 28 H -0.272 1.272 29 N -0.464 5.464 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 -0.039 4.385 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.052 4.052 3 H 0.081 0.919 4 C -0.068 4.068 5 C -0.128 4.128 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.126 4.126 9 C -0.098 4.098 10 C -0.019 4.019 11 H 0.067 0.933 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.084 4.084 15 N -0.208 5.208 16 C 0.085 3.915 17 C -0.361 4.361 18 C -0.071 4.071 19 C -0.329 4.329 20 C 0.135 3.865 21 C -0.490 4.490 22 H 0.089 0.911 23 C -0.176 4.176 24 N -0.346 5.346 25 Si 0.774 3.226 26 H -0.185 1.185 27 H -0.193 1.193 28 H -0.197 1.197 29 N -0.176 5.176 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.129 0.871 46 H 0.107 0.893 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.867 1.588 4.115 11.729 hybrid contribution 0.982 -1.651 -0.614 2.017 sum -9.886 -0.063 3.501 10.487 Atomic orbital electron populations 1.21783 0.92000 1.02391 1.02727 1.20041 0.96455 0.98107 0.90599 0.91883 1.19716 0.97370 0.94228 0.95503 1.20754 1.00997 0.94055 0.97025 1.21004 0.98909 0.99358 0.95060 1.20968 0.98950 0.94485 1.00096 1.20782 0.98472 0.95381 0.97932 1.20595 0.96309 0.98896 0.93981 1.22829 0.85617 0.97940 0.95503 0.93306 1.22548 0.98994 1.00950 0.92198 1.22347 0.93376 1.02255 0.97488 1.22853 0.99483 0.99146 0.86957 1.61367 1.06686 1.47769 1.04953 1.19866 0.92315 0.86934 0.92359 1.21595 1.11582 0.94921 1.07968 1.20840 0.94429 0.97981 0.93896 1.21710 1.08566 0.96761 1.05879 1.18496 0.90223 0.87367 0.90427 1.19650 1.21305 0.92629 1.15436 0.91103 1.26467 0.95902 0.96798 0.98400 1.70253 1.30665 1.02693 1.30991 0.85616 0.78754 0.78941 0.79290 1.18527 1.19314 1.19670 1.68382 1.08313 1.36016 1.04922 0.92594 0.92250 0.90103 0.86614 0.86071 0.86735 0.88785 0.89288 0.88276 0.90487 0.89965 0.89650 0.94728 0.92384 0.88366 0.87126 0.89270 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.85 71.98 0.64 -2.43 16 2 C -0.03 -1.05 2.33 -11.54 -0.03 -1.08 16 3 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 4 C -0.07 -2.56 3.00 -19.87 -0.06 -2.62 16 5 C -0.11 -3.98 7.38 22.27 0.16 -3.82 16 6 C -0.13 -4.63 10.05 22.27 0.22 -4.40 16 7 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 8 C -0.11 -4.57 10.05 22.27 0.22 -4.34 16 9 C -0.08 -3.37 8.56 22.27 0.19 -3.18 16 10 C 0.09 2.78 1.77 45.26 0.08 2.86 16 11 H 0.05 1.61 5.85 -2.38 -0.01 1.59 16 12 C -0.11 -2.52 5.37 31.80 0.17 -2.35 16 13 C -0.12 -2.75 6.93 31.47 0.22 -2.53 16 14 C 0.04 1.47 6.49 86.44 0.56 2.03 16 15 N -0.49 -19.29 5.06 -665.80 -3.37 -22.65 16 16 C 0.32 14.86 3.71 133.42 0.49 15.35 16 17 C -0.33 -14.47 7.04 22.73 0.16 -14.31 16 18 C -0.05 -2.07 10.15 22.39 0.23 -1.84 16 19 C -0.31 -15.13 9.83 22.87 0.22 -14.90 16 20 C 0.26 13.87 6.55 40.18 0.26 14.13 16 21 C -0.46 -24.48 9.13 23.46 0.21 -24.27 16 22 H 0.07 3.71 7.86 -2.91 -0.02 3.69 16 23 C 0.05 2.42 5.48 85.29 0.47 2.89 16 24 N -0.73 -37.84 11.50 21.84 0.25 -37.59 16 25 Si 0.95 38.68 29.57 68.60 2.03 40.71 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 28 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 29 N -0.46 -24.09 6.68 -186.59 -1.25 -25.34 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.32 7.34 -2.39 -0.02 1.30 16 32 H 0.08 1.48 7.09 -2.39 -0.02 1.46 16 33 H 0.12 3.78 7.11 -2.91 -0.02 3.76 16 34 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.09 4.02 7.95 -2.91 -0.02 4.00 16 38 H 0.10 1.71 7.97 -2.39 -0.02 1.69 16 39 H 0.08 1.77 8.05 -2.38 -0.02 1.75 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.03 1.23 6.63 -2.39 -0.02 1.22 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.10 3.87 7.03 -2.91 -0.02 3.85 16 45 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 46 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.27 13.19 8.29 -92.71 -0.77 12.42 16 Total: -1.00 -61.33 368.75 3.27 -58.05 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.95 Total: 36.43 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 4.66 Total: -49.60 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -4.36 Total: -85.59 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -61.33 3.27 -58.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.534 kcal (2) G-P(sol) polarization free energy of solvation -61.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds