Wall clock time and date at job start Tue Mar 31 2020 15:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47061 * 119.99586 * 2 1 3 5 5 C 1.38243 * 119.99750 * 59.72672 * 4 2 1 6 6 C 1.38238 * 119.99802 * 179.76258 * 5 4 2 7 7 C 1.38236 * 119.99740 * 0.51484 * 6 5 4 8 8 C 1.38235 * 120.00173 * 359.74199 * 7 6 5 9 9 C 1.38229 * 120.00260 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47408 * 240.00018 * 2 1 3 11 11 H 1.09002 * 110.36642 * 299.29856 * 10 2 1 12 12 C 1.54381 * 110.40898 * 176.94905 * 10 2 1 13 13 C 1.54263 * 105.05720 * 217.36410 * 12 10 2 14 14 C 1.54376 * 105.06075 * 0.02562 * 13 12 10 15 15 N 1.48551 * 110.41096 * 61.64592 * 10 2 1 16 16 C 1.38820 * 111.00496 * 277.82023 * 15 10 2 17 17 C 1.39793 * 119.58595 * 179.72676 * 16 15 10 18 18 C 1.38606 * 119.49082 * 179.76656 * 17 16 15 19 19 C 1.38387 * 118.67624 * 0.49705 * 18 17 16 20 20 C 1.40552 * 119.15380 * 359.75114 * 19 18 17 21 21 C 1.41312 * 119.78665 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00017 * 150.02609 * 21 20 19 23 23 C 1.40020 * 120.00180 * 330.03050 * 21 20 19 24 24 N 1.30746 * 120.00367 * 161.72241 * 23 21 20 25 25 Si 1.86807 * 119.99829 * 341.71779 * 23 21 20 26 26 H 1.48505 * 109.46928 * 95.41988 * 25 23 21 27 27 H 1.48497 * 109.47015 * 215.41734 * 25 23 21 28 28 H 1.48500 * 109.47058 * 335.42266 * 25 23 21 29 29 N 1.31955 * 119.58044 * 359.97438 * 16 15 10 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47280 * 299.99954 * 1 2 3 32 32 H 1.08996 * 109.46965 * 60.00461 * 1 2 3 33 33 H 1.07999 * 120.00210 * 359.97438 * 5 4 2 34 34 H 1.07991 * 119.99855 * 180.23492 * 6 5 4 35 35 H 1.08002 * 119.99532 * 179.72158 * 7 6 5 36 36 H 1.07998 * 119.99569 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00459 * 179.97438 * 9 8 7 38 38 H 1.08993 * 110.32495 * 336.26081 * 12 10 2 39 39 H 1.09002 * 110.32364 * 98.36922 * 12 10 2 40 40 H 1.09001 * 110.31933 * 118.90008 * 13 12 10 41 41 H 1.08994 * 110.32666 * 241.10088 * 13 12 10 42 42 H 1.09006 * 110.41086 * 142.62658 * 14 13 12 43 43 H 1.08993 * 110.41629 * 264.95396 * 14 13 12 44 44 H 1.08005 * 120.25764 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.65799 * 180.24401 * 18 17 16 46 46 H 1.08002 * 120.42535 * 179.76804 * 19 18 17 47 47 H 0.96998 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6937 -2.0322 1.4522 6 6 2.1585 -2.6852 2.5784 7 6 2.9531 -2.0133 3.4884 8 6 3.2874 -0.6900 3.2694 9 6 2.8266 -0.0383 2.1408 10 6 2.0401 -0.7212 -1.2492 11 1 1.6951 -1.7552 -1.2577 12 6 3.5818 -0.6675 -1.3101 13 6 3.9178 -0.4906 -2.8053 14 6 2.5510 -0.4517 -3.5218 15 7 1.5894 -0.0146 -2.4757 16 6 0.2906 -0.3744 -2.8085 17 6 -0.3155 0.1915 -3.9339 18 6 -1.6107 -0.1728 -4.2671 19 6 -2.2718 -1.0846 -3.4629 20 6 -1.6104 -1.6143 -2.3415 21 6 -2.2726 -2.5467 -1.5115 22 1 -1.7048 -3.2991 -0.9841 23 6 -3.6650 -2.4954 -1.3727 24 7 -4.3153 -3.5338 -0.9163 25 14 -4.5935 -0.9431 -1.8396 26 1 -5.1007 -1.0689 -3.2297 27 1 -5.7365 -0.7519 -0.9111 28 1 -3.6814 0.2253 -1.7494 29 7 -0.3580 -1.2425 -2.0556 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.0688 -2.5557 0.7438 34 1 1.8970 -3.7189 2.7497 35 1 3.3126 -2.5222 4.3706 36 1 3.9079 -0.1650 3.9805 37 1 3.0874 0.9957 1.9698 38 1 3.9540 0.1806 -0.7355 39 1 4.0082 -1.5966 -0.9320 40 1 4.4551 0.4444 -2.9644 41 1 4.5092 -1.3334 -3.1627 42 1 2.5725 0.2649 -4.3430 43 1 2.2863 -1.4428 -3.8900 44 1 0.2227 0.9039 -4.5416 45 1 -2.0957 0.2496 -5.1346 46 1 -3.2829 -1.3855 -3.6941 47 1 -5.2799 -3.4983 -0.8206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334305098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:14 Heat of formation + Delta-G solvation = 76.377005 kcal Electronic energy + Delta-G solvation = -27963.194073 eV Core-core repulsion = 24496.846360 eV Total energy + Delta-G solvation = -3466.347713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.26145 -38.85884 -37.49199 -34.13365 -33.75853 -32.15350 -31.13732 -30.63697 -29.12533 -28.76158 -27.49973 -25.52467 -23.52987 -22.61770 -22.14450 -21.49376 -20.73349 -20.34124 -18.95950 -17.80511 -16.65685 -16.21659 -15.64397 -15.47283 -15.06233 -14.72606 -14.44512 -14.43015 -13.93185 -13.31456 -13.23657 -13.07504 -12.79108 -12.75144 -12.71769 -12.44274 -12.14078 -11.97173 -11.73009 -11.72128 -11.41660 -11.16175 -11.05000 -10.87481 -10.76799 -10.44522 -10.42535 -10.28879 -10.13229 -10.05745 -9.94308 -9.44130 -8.88538 -8.65503 -8.42862 -8.35833 -7.82664 -7.20941 -7.03275 -4.67676 1.63088 1.66745 2.40281 2.54698 3.05074 3.17272 3.25948 3.91056 4.03204 4.22681 4.48802 4.83109 4.98664 5.09609 5.12830 5.20120 5.26447 5.39585 5.43165 5.48902 5.70667 5.75226 5.77722 5.81336 5.83079 5.93389 5.95469 6.04928 6.13071 6.15226 6.24202 6.29019 6.30744 6.36848 6.41922 6.43450 6.57586 6.64430 6.68967 6.72349 6.79059 6.86347 7.01530 7.05898 7.07814 7.29202 7.35586 7.44541 7.49468 7.57317 8.00905 8.26000 8.44833 8.68989 9.53016 9.98440 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.005369 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.777862 B = 5213.521487 C = 6951.384250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.059 4.059 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.134 4.134 8 C -0.125 4.125 9 C -0.122 4.122 10 C 0.086 3.914 11 H 0.081 0.919 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.048 3.952 15 N -0.458 5.458 16 C 0.320 3.680 17 C -0.294 4.294 18 C -0.039 4.039 19 C -0.293 4.293 20 C 0.271 3.729 21 C -0.422 4.422 22 H 0.096 0.904 23 C 0.091 3.909 24 N -0.798 5.798 25 Si 0.910 3.090 26 H -0.270 1.270 27 H -0.289 1.289 28 H -0.247 1.247 29 N -0.556 5.556 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.097 4.710 2.161 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.086 0.914 4 C -0.059 4.059 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.152 4.152 8 C -0.143 4.143 9 C -0.140 4.140 10 C -0.022 4.022 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.161 4.161 14 C -0.079 4.079 15 N -0.177 5.177 16 C 0.084 3.916 17 C -0.319 4.319 18 C -0.063 4.063 19 C -0.315 4.315 20 C 0.145 3.855 21 C -0.454 4.454 22 H 0.114 0.886 23 C -0.130 4.130 24 N -0.423 5.423 25 Si 0.737 3.263 26 H -0.196 1.196 27 H -0.217 1.217 28 H -0.170 1.170 29 N -0.275 5.275 30 H 0.112 0.888 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.278 4.756 3.034 13.512 hybrid contribution -1.152 0.271 -1.010 1.556 sum 11.127 5.027 2.024 12.376 Atomic orbital electron populations 1.22196 0.92495 1.04723 0.99541 1.19980 0.97409 0.97460 0.89855 0.91356 1.19956 0.95908 0.94157 0.95914 1.21236 0.99016 0.94554 0.97526 1.21157 0.98033 0.99858 0.94745 1.21045 0.99722 0.94983 0.99426 1.21020 1.00687 0.94995 0.97645 1.21030 0.98676 0.99595 0.94731 1.22522 0.92337 0.98219 0.89091 0.90072 1.22389 0.95851 1.01818 0.95944 1.22303 0.96491 1.01751 0.95588 1.23009 0.90850 0.99562 0.94434 1.62520 1.00056 1.51410 1.03719 1.19659 0.90301 0.91235 0.90408 1.20753 0.97642 1.10492 1.02988 1.20843 0.93858 0.94635 0.96986 1.21813 1.01757 1.07462 1.00462 1.18332 0.87589 0.89488 0.90131 1.19102 0.91013 1.11400 1.23925 0.88569 1.26046 0.97731 0.97325 0.91902 1.69622 1.10396 1.29005 1.33232 0.86336 0.78720 0.83265 0.77987 1.19610 1.21655 1.17036 1.68433 1.12097 1.16730 1.30276 0.88836 0.95692 0.92142 0.85206 0.86411 0.86795 0.86758 0.86621 0.91334 0.91623 0.91238 0.91520 0.90120 0.93378 0.87897 0.87870 0.87549 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 7.31 37.16 0.27 -2.38 16 2 C -0.03 -0.47 2.21 -91.77 -0.20 -0.68 16 3 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 4 C -0.06 -0.91 4.21 -104.62 -0.44 -1.35 16 5 C -0.11 -1.68 8.72 -39.58 -0.34 -2.02 16 6 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 7 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 8 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 9 C -0.12 -1.66 9.67 -39.58 -0.38 -2.05 16 10 C 0.09 1.45 1.66 -66.08 -0.11 1.34 16 11 H 0.08 1.57 6.44 -51.93 -0.33 1.24 16 12 C -0.12 -1.66 5.98 -25.35 -0.15 -1.81 16 13 C -0.12 -1.52 7.00 -25.35 -0.18 -1.70 16 14 C 0.05 0.72 6.05 -2.13 -0.01 0.71 16 15 N -0.46 -8.19 5.05 -161.27 -0.81 -9.01 16 16 C 0.32 6.73 4.38 -155.33 -0.68 6.05 16 17 C -0.29 -6.06 9.55 -38.86 -0.37 -6.43 16 18 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 19 C -0.29 -6.91 7.19 -38.65 -0.28 -7.18 16 20 C 0.27 6.73 5.88 -85.00 -0.50 6.23 16 21 C -0.42 -11.08 9.67 -37.75 -0.37 -11.45 16 22 H 0.10 2.68 8.06 -52.48 -0.42 2.26 16 23 C 0.09 2.32 5.40 -17.35 -0.09 2.22 16 24 N -0.80 -20.55 13.92 55.55 0.77 -19.77 16 25 Si 0.91 20.46 24.51 -169.99 -4.17 16.29 16 26 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 27 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.25 -5.81 6.87 56.52 0.39 -5.42 16 29 N -0.56 -12.81 4.47 -10.33 -0.05 -12.86 16 30 H 0.09 2.08 5.74 -51.93 -0.30 1.78 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.34 5.59 -51.93 -0.29 1.05 16 33 H 0.13 2.28 7.13 -52.49 -0.37 1.91 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.39 7.95 -52.49 -0.42 0.97 16 38 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.78 7.97 -51.93 -0.41 0.36 16 44 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 46 H 0.11 2.50 4.73 -52.49 -0.25 2.25 16 47 H 0.29 6.70 8.29 -40.82 -0.34 6.37 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -26.64 362.38 -11.24 -37.88 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.01 Total: 9.82 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -5.43 Total: -27.81 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.09 Total: -41.64 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.64 -11.24 -37.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.257 kcal (2) G-P(sol) polarization free energy of solvation -26.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds