Wall clock time and date at job start Tue Mar 31 2020 15:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47061 * 119.99586 * 2 1 3 5 5 C 1.38243 * 119.99750 * 59.72672 * 4 2 1 6 6 C 1.38238 * 119.99802 * 179.76258 * 5 4 2 7 7 C 1.38236 * 119.99740 * 0.51484 * 6 5 4 8 8 C 1.38235 * 120.00173 * 359.74199 * 7 6 5 9 9 C 1.38229 * 120.00260 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47408 * 240.00018 * 2 1 3 11 11 H 1.09002 * 110.36642 * 299.29856 * 10 2 1 12 12 C 1.54381 * 110.40898 * 176.94905 * 10 2 1 13 13 C 1.54263 * 105.05720 * 217.36410 * 12 10 2 14 14 C 1.54376 * 105.06075 * 0.02562 * 13 12 10 15 15 N 1.48551 * 110.41096 * 61.64592 * 10 2 1 16 16 C 1.38820 * 111.00496 * 277.82023 * 15 10 2 17 17 C 1.39793 * 119.58595 * 179.72676 * 16 15 10 18 18 C 1.38606 * 119.49082 * 179.76656 * 17 16 15 19 19 C 1.38387 * 118.67624 * 0.49705 * 18 17 16 20 20 C 1.40552 * 119.15380 * 359.75114 * 19 18 17 21 21 C 1.41312 * 119.78665 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00017 * 150.02609 * 21 20 19 23 23 C 1.40020 * 120.00180 * 330.03050 * 21 20 19 24 24 N 1.30746 * 120.00367 * 161.72241 * 23 21 20 25 25 Si 1.86807 * 119.99829 * 341.71779 * 23 21 20 26 26 H 1.48505 * 109.46928 * 95.41988 * 25 23 21 27 27 H 1.48497 * 109.47015 * 215.41734 * 25 23 21 28 28 H 1.48500 * 109.47058 * 335.42266 * 25 23 21 29 29 N 1.31955 * 119.58044 * 359.97438 * 16 15 10 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47280 * 299.99954 * 1 2 3 32 32 H 1.08996 * 109.46965 * 60.00461 * 1 2 3 33 33 H 1.07999 * 120.00210 * 359.97438 * 5 4 2 34 34 H 1.07991 * 119.99855 * 180.23492 * 6 5 4 35 35 H 1.08002 * 119.99532 * 179.72158 * 7 6 5 36 36 H 1.07998 * 119.99569 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00459 * 179.97438 * 9 8 7 38 38 H 1.08993 * 110.32495 * 336.26081 * 12 10 2 39 39 H 1.09002 * 110.32364 * 98.36922 * 12 10 2 40 40 H 1.09001 * 110.31933 * 118.90008 * 13 12 10 41 41 H 1.08994 * 110.32666 * 241.10088 * 13 12 10 42 42 H 1.09006 * 110.41086 * 142.62658 * 14 13 12 43 43 H 1.08993 * 110.41629 * 264.95396 * 14 13 12 44 44 H 1.08005 * 120.25764 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.65799 * 180.24401 * 18 17 16 46 46 H 1.08002 * 120.42535 * 179.76804 * 19 18 17 47 47 H 0.96998 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6937 -2.0322 1.4522 6 6 2.1585 -2.6852 2.5784 7 6 2.9531 -2.0133 3.4884 8 6 3.2874 -0.6900 3.2694 9 6 2.8266 -0.0383 2.1408 10 6 2.0401 -0.7212 -1.2492 11 1 1.6951 -1.7552 -1.2577 12 6 3.5818 -0.6675 -1.3101 13 6 3.9178 -0.4906 -2.8053 14 6 2.5510 -0.4517 -3.5218 15 7 1.5894 -0.0146 -2.4757 16 6 0.2906 -0.3744 -2.8085 17 6 -0.3155 0.1915 -3.9339 18 6 -1.6107 -0.1728 -4.2671 19 6 -2.2718 -1.0846 -3.4629 20 6 -1.6104 -1.6143 -2.3415 21 6 -2.2726 -2.5467 -1.5115 22 1 -1.7048 -3.2991 -0.9841 23 6 -3.6650 -2.4954 -1.3727 24 7 -4.3153 -3.5338 -0.9163 25 14 -4.5935 -0.9431 -1.8396 26 1 -5.1007 -1.0689 -3.2297 27 1 -5.7365 -0.7519 -0.9111 28 1 -3.6814 0.2253 -1.7494 29 7 -0.3580 -1.2425 -2.0556 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.0688 -2.5557 0.7438 34 1 1.8970 -3.7189 2.7497 35 1 3.3126 -2.5222 4.3706 36 1 3.9079 -0.1650 3.9805 37 1 3.0874 0.9957 1.9698 38 1 3.9540 0.1806 -0.7355 39 1 4.0082 -1.5966 -0.9320 40 1 4.4551 0.4444 -2.9644 41 1 4.5092 -1.3334 -3.1627 42 1 2.5725 0.2649 -4.3430 43 1 2.2863 -1.4428 -3.8900 44 1 0.2227 0.9039 -4.5416 45 1 -2.0957 0.2496 -5.1346 46 1 -3.2829 -1.3855 -3.6941 47 1 -5.2799 -3.4983 -0.8206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334305098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:13 Heat of formation + Delta-G solvation = 64.066070 kcal Electronic energy + Delta-G solvation = -27963.727916 eV Core-core repulsion = 24496.846360 eV Total energy + Delta-G solvation = -3466.881555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72111 -40.14651 -38.97618 -35.74518 -35.29701 -33.67626 -32.87698 -31.72585 -30.41408 -30.32309 -28.87793 -27.33363 -24.89579 -24.00840 -23.35530 -23.20258 -22.09099 -21.62612 -20.30811 -19.57869 -17.98618 -17.73166 -17.31069 -16.83123 -16.51713 -16.23365 -16.06092 -15.60441 -15.22637 -14.89980 -14.79178 -14.34785 -14.22053 -14.05651 -13.98108 -13.89851 -13.73255 -13.47668 -13.29971 -13.07402 -12.88013 -12.75732 -12.46880 -12.29433 -12.17278 -12.09794 -11.86353 -11.67392 -11.56457 -11.50450 -11.27305 -11.23710 -10.49701 -10.19782 -9.74994 -9.60209 -9.49614 -8.95998 -8.88913 -6.65880 0.53000 0.56938 0.61918 0.80151 1.21144 1.36591 1.42645 2.06458 2.48888 2.85946 3.01147 3.52817 3.60279 3.80189 3.91142 3.99927 4.13307 4.16620 4.23058 4.29201 4.35059 4.39837 4.51139 4.56650 4.59301 4.62328 4.67105 4.69814 4.74576 4.81626 4.89099 4.96655 4.98609 5.00451 5.11436 5.16148 5.21764 5.22761 5.26422 5.29379 5.30383 5.49753 5.63872 5.66418 5.68714 5.72789 5.73559 5.87516 5.92737 6.16381 6.20740 6.33648 6.55341 6.80623 7.73767 8.12645 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.005369 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.777862 B = 5213.521487 C = 6951.384250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.072 4.072 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.122 4.122 10 C 0.086 3.914 11 H 0.044 0.956 12 C -0.114 4.114 13 C -0.112 4.112 14 C 0.043 3.957 15 N -0.458 5.458 16 C 0.310 3.690 17 C -0.285 4.285 18 C -0.037 4.037 19 C -0.314 4.314 20 C 0.258 3.742 21 C -0.456 4.456 22 H 0.054 0.946 23 C 0.060 3.940 24 N -0.836 5.836 25 Si 0.965 3.035 26 H -0.252 1.252 27 H -0.276 1.276 28 H -0.266 1.266 29 N -0.566 5.566 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.030 0.970 44 H 0.134 0.866 45 H 0.142 0.858 46 H 0.106 0.894 47 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.849 7.615 1.895 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.072 4.072 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.136 4.136 9 C -0.140 4.140 10 C -0.022 4.022 11 H 0.063 0.937 12 C -0.152 4.152 13 C -0.150 4.150 14 C -0.083 4.083 15 N -0.177 5.177 16 C 0.074 3.926 17 C -0.308 4.308 18 C -0.061 4.061 19 C -0.336 4.336 20 C 0.131 3.869 21 C -0.489 4.489 22 H 0.073 0.927 23 C -0.157 4.157 24 N -0.463 5.463 25 Si 0.789 3.211 26 H -0.177 1.177 27 H -0.202 1.202 28 H -0.190 1.190 29 N -0.285 5.285 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.048 0.952 44 H 0.152 0.848 45 H 0.160 0.840 46 H 0.124 0.876 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.049 7.651 2.756 17.106 hybrid contribution -1.792 -0.584 -0.929 2.101 sum 13.257 7.068 1.827 15.135 Atomic orbital electron populations 1.21972 0.95452 1.02132 0.98124 1.19872 0.94691 0.98265 0.90937 0.90129 1.19828 0.97386 0.93859 0.96166 1.21067 1.00058 0.95355 0.98200 1.21322 0.98518 1.00480 0.94533 1.21411 0.98333 0.95325 0.99574 1.21438 0.99924 0.94834 0.97431 1.21274 0.97805 1.00492 0.94430 1.22477 0.94874 0.96040 0.88778 0.93745 1.22340 0.92732 1.02650 0.97472 1.22313 0.95052 1.03887 0.93780 1.23187 0.91508 0.99061 0.94517 1.62607 0.99098 1.50947 1.05055 1.20151 0.91743 0.90374 0.90291 1.21210 0.97519 1.09679 1.02407 1.21268 0.93955 0.93458 0.97441 1.21877 1.02136 1.08860 1.00735 1.18395 0.88480 0.89582 0.90429 1.18991 0.91780 1.12297 1.25809 0.92732 1.26627 0.97827 0.99557 0.91727 1.69643 1.11179 1.30386 1.35088 0.85512 0.77505 0.79204 0.78919 1.17676 1.20202 1.18995 1.68474 1.11648 1.17234 1.31122 0.92071 0.95641 0.94672 0.88918 0.85730 0.83752 0.83221 0.84477 0.89814 0.91376 0.88743 0.89743 0.88125 0.95192 0.84775 0.84013 0.87627 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 7.31 71.98 0.53 -4.54 16 2 C -0.02 -0.64 2.21 -11.54 -0.03 -0.67 16 3 H 0.08 2.52 7.86 -2.39 -0.02 2.51 16 4 C -0.07 -2.24 4.21 -19.86 -0.08 -2.32 16 5 C -0.13 -4.38 8.72 22.27 0.19 -4.18 16 6 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 7 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 8 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 9 C -0.12 -3.03 9.67 22.27 0.22 -2.81 16 10 C 0.09 2.93 1.66 45.06 0.07 3.00 16 11 H 0.04 1.85 6.44 -2.39 -0.02 1.84 16 12 C -0.11 -2.88 5.98 31.49 0.19 -2.69 16 13 C -0.11 -2.41 7.00 31.49 0.22 -2.19 16 14 C 0.04 1.21 6.05 86.43 0.52 1.73 16 15 N -0.46 -16.03 5.05 -664.14 -3.35 -19.38 16 16 C 0.31 13.16 4.38 133.42 0.58 13.74 16 17 C -0.28 -11.22 9.55 22.73 0.22 -11.00 16 18 C -0.04 -1.49 10.15 22.39 0.23 -1.26 16 19 C -0.31 -15.04 7.19 22.87 0.16 -14.87 16 20 C 0.26 13.62 5.88 40.17 0.24 13.86 16 21 C -0.46 -26.15 9.67 23.46 0.23 -25.92 16 22 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 23 C 0.06 3.23 5.40 85.29 0.46 3.69 16 24 N -0.84 -45.74 13.92 21.84 0.30 -45.43 16 25 Si 0.96 43.53 24.51 68.60 1.68 45.21 16 26 H -0.25 -10.52 6.70 99.48 0.67 -9.85 16 27 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -12.65 6.87 99.48 0.68 -11.96 16 29 N -0.57 -27.65 4.47 -186.59 -0.83 -28.48 16 30 H 0.06 3.01 5.74 -2.39 -0.01 2.99 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.62 5.59 -2.39 -0.01 1.61 16 33 H 0.09 3.77 7.13 -2.91 -0.02 3.75 16 34 H 0.12 3.21 8.06 -2.92 -0.02 3.19 16 35 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.78 7.95 -2.91 -0.02 2.76 16 38 H 0.08 1.89 7.84 -2.39 -0.02 1.87 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.03 0.94 7.97 -2.39 -0.02 0.92 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 45 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 46 H 0.11 5.00 4.73 -2.91 -0.01 4.99 16 47 H 0.30 14.50 8.29 -92.71 -0.77 13.73 16 Total: -1.00 -63.71 362.38 3.31 -60.40 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.89 Total: 32.57 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 4.62 Total: -44.89 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.88 Total: -93.30 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.68 Total: 45.21 kcal Total: -63.71 3.31 -60.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334305098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.468 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds