Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99868 * 2 1 4 4 O 1.20819 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99846 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.64155 * 61.69847 * 5 3 2 7 7 C 1.54931 * 110.72560 * 298.54925 * 5 3 2 8 8 N 1.48539 * 103.22754 * 204.22960 * 7 5 3 9 9 C 1.38571 * 111.00376 * 159.71867 * 8 7 5 10 10 N 1.31226 * 126.47425 * 323.79572 * 9 8 7 11 11 N 1.28519 * 109.86299 * 179.81889 * 10 9 8 12 12 C 1.30301 * 110.05245 * 0.45375 * 11 10 9 13 13 C 1.50699 * 126.34572 * 179.69396 * 12 11 10 14 14 C 1.53004 * 109.46694 * 270.03596 * 13 12 11 15 15 C 1.50710 * 109.47020 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00013 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47552 * 59.99840 * 19 17 15 21 21 H 1.48501 * 109.47193 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47167 * 299.99798 * 19 17 15 23 23 N 1.36454 * 126.47405 * 144.10346 * 9 8 7 24 24 C 1.46493 * 127.13560 * 0.02562 * 23 9 8 25 25 C 1.47899 * 105.82047 * 39.20021 * 8 7 5 26 26 C 1.53991 * 107.05935 * 334.67746 * 25 8 7 27 27 H 1.09004 * 110.31451 * 120.14080 * 26 25 8 28 28 C 1.53004 * 110.30880 * 242.30485 * 26 25 8 29 29 H 1.09003 * 109.47185 * 300.00351 * 1 2 3 30 30 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47450 * 60.00017 * 1 2 3 32 32 H 1.09004 * 110.66637 * 322.65866 * 7 5 3 33 33 H 1.08996 * 110.66941 * 85.62275 * 7 5 3 34 34 H 1.09000 * 109.47700 * 30.03813 * 13 12 11 35 35 H 1.08997 * 109.47226 * 150.03980 * 13 12 11 36 36 H 1.08999 * 109.47354 * 299.99972 * 14 13 12 37 37 H 1.09003 * 109.46832 * 60.00653 * 14 13 12 38 38 H 0.96998 * 120.00379 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46621 * 95.12607 * 24 23 9 40 40 H 1.09002 * 109.47421 * 215.12111 * 24 23 9 41 41 H 1.08993 * 109.47506 * 335.12662 * 24 23 9 42 42 H 1.09000 * 109.91311 * 94.02599 * 25 8 7 43 43 H 1.08996 * 109.91927 * 215.11835 * 25 8 7 44 44 H 1.09002 * 109.47599 * 175.71476 * 28 26 25 45 45 H 1.09003 * 109.47145 * 295.71856 * 28 26 25 46 46 H 1.09006 * 109.46716 * 55.71199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9757 0.8119 -0.8973 7 6 4.1496 0.6123 1.2738 8 7 5.4702 1.2747 1.4271 9 6 5.9383 1.1545 2.7258 10 7 5.2164 1.1848 3.8212 11 7 5.9751 1.0402 4.8484 12 6 7.2170 0.9196 4.4731 13 6 8.4096 0.7390 5.3765 14 6 8.9737 2.1095 5.7565 15 6 10.1667 1.9289 6.6595 16 1 10.4904 0.9360 6.9345 17 6 10.8449 3.0313 7.1346 18 7 10.4510 4.2404 6.7993 19 14 12.3240 2.8074 8.2532 20 1 13.3666 2.0229 7.5443 21 1 12.8715 4.1376 8.6222 22 1 11.9101 2.0838 9.4822 23 7 7.2378 0.9882 3.1075 24 6 8.4116 0.9016 2.2354 25 6 5.2533 2.6937 1.0710 26 6 4.0372 2.7419 0.1276 27 1 3.2474 3.3567 0.5594 28 6 4.4482 3.2881 -1.2412 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 3.5156 0.8139 2.1373 33 1 4.2693 -0.4613 1.1284 34 1 8.1050 0.2086 6.2788 35 1 9.1749 0.1624 4.8571 36 1 9.2784 2.6399 4.8543 37 1 8.2083 2.6861 6.2761 38 1 10.9283 5.0161 7.1332 39 1 8.8711 1.8860 2.1458 40 1 9.1307 0.2025 2.6623 41 1 8.1065 0.5520 1.2491 42 1 5.0490 3.2750 1.9701 43 1 6.1347 3.0887 0.5660 44 1 3.5966 3.2453 -1.9203 45 1 4.7775 4.3219 -1.1360 46 1 5.2636 2.6862 -1.6426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338561090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = -4.282861 kcal Electronic energy + Delta-G solvation = -27418.309640 eV Core-core repulsion = 23537.614990 eV Total energy + Delta-G solvation = -3880.694650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.67030 -41.07796 -39.11105 -36.78670 -34.84752 -34.31586 -33.39919 -31.62054 -30.89534 -28.57953 -27.84206 -27.31423 -26.19428 -25.19159 -23.93022 -21.94456 -21.81896 -20.63455 -20.11100 -19.89051 -18.20525 -17.42498 -16.87463 -16.66575 -16.23757 -16.11509 -15.76767 -15.16146 -14.53648 -14.35173 -14.18067 -13.89241 -13.66959 -13.53099 -13.31381 -13.11427 -13.07171 -12.60042 -12.48461 -12.34144 -12.32069 -12.22442 -11.46412 -11.38718 -11.26130 -11.16616 -11.14180 -11.04522 -10.98844 -10.81863 -10.72297 -10.39575 -10.01196 -9.90319 -9.75986 -9.27182 -9.08061 -8.42942 -8.33861 -6.07298 -4.11723 1.82222 2.01202 2.26613 2.55572 3.18740 3.29643 3.34800 3.36870 3.74175 4.00511 4.08702 4.39453 4.44545 4.68224 4.77623 4.78360 4.85573 4.88715 4.95277 4.99228 5.16378 5.20327 5.23478 5.28731 5.29734 5.36639 5.46466 5.49007 5.55072 5.63222 5.67715 5.75675 5.81039 5.92699 6.04527 6.19152 6.31322 6.34730 6.42471 6.63080 6.87278 7.35754 7.40056 7.52506 7.66060 7.89638 8.27001 8.94110 9.10489 9.52994 11.03808 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.002437 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.833656 B =11484.461250 C =11862.449612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.501 6.501 5 C -0.084 4.084 6 H 0.126 0.874 7 C 0.064 3.936 8 N -0.438 5.438 9 C 0.311 3.689 10 N -0.314 5.314 11 N -0.296 5.296 12 C 0.218 3.782 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.466 5.466 24 C 0.081 3.919 25 C 0.047 3.953 26 C -0.088 4.088 27 H 0.100 0.900 28 C -0.141 4.141 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -7.958 -19.873 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.387 6.387 5 C -0.104 4.104 6 H 0.144 0.856 7 C -0.063 4.063 8 N -0.163 5.163 9 C -0.046 4.046 10 N -0.158 5.158 11 N -0.136 5.136 12 C -0.049 4.049 13 C -0.072 4.072 14 C -0.006 4.006 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.159 5.159 24 C -0.062 4.062 25 C -0.080 4.080 26 C -0.107 4.107 27 H 0.118 0.882 28 C -0.199 4.199 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.263 -7.618 -19.296 25.175 hybrid contribution 1.230 0.357 0.171 1.292 sum -13.033 -7.260 -19.125 24.256 Atomic orbital electron populations 1.23303 0.76086 1.03870 1.02660 1.86519 1.23618 1.33161 1.83897 1.23394 0.91534 0.81461 0.72100 1.90672 1.66856 1.36327 1.44886 1.22066 0.87255 0.99062 1.02011 0.85592 1.23107 0.87778 0.99533 0.95885 1.61435 1.26497 1.12892 1.15431 1.22259 0.82963 1.07455 0.91909 1.74443 1.26730 1.19976 0.94662 1.74043 0.99239 1.19517 1.20764 1.25680 0.97901 1.00656 0.80684 1.20476 0.88454 1.03020 0.95228 1.19064 0.95889 0.88925 0.96705 1.21096 1.12616 0.92818 1.29796 0.92307 1.25012 0.97654 0.95197 0.96399 1.69956 1.40558 0.97733 1.44857 0.86606 0.82672 0.77254 0.81170 1.20193 1.21286 1.20059 1.46133 1.07569 1.54251 1.07933 1.22023 0.85761 1.04251 0.94213 1.23128 0.98544 0.87195 0.99171 1.22021 0.97582 0.93781 0.97333 0.88176 1.21835 1.01540 1.01501 0.94975 0.91679 0.87936 0.91878 0.90363 0.88134 0.89189 0.91085 0.96763 0.95652 0.92781 0.90068 0.89156 0.88987 0.91887 0.88924 0.92253 0.91743 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.35 10.55 -39.26 -0.41 -3.76 16 3 C 0.47 4.96 7.26 36.01 0.26 5.22 16 4 O -0.50 -6.44 15.23 -18.74 -0.29 -6.73 16 5 C -0.08 -0.76 3.10 -89.91 -0.28 -1.04 16 6 H 0.13 0.87 7.87 -51.93 -0.41 0.46 16 7 C 0.06 0.72 5.87 -1.90 -0.01 0.71 16 8 N -0.44 -5.49 5.28 -170.55 -0.90 -6.39 16 9 C 0.31 5.13 6.55 -318.88 -2.09 3.05 16 10 N -0.31 -6.19 11.28 30.31 0.34 -5.85 16 11 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16 12 C 0.22 4.30 7.32 -154.01 -1.13 3.17 16 13 C -0.03 -0.64 5.53 -27.88 -0.15 -0.80 16 14 C 0.03 0.81 4.96 -27.88 -0.14 0.68 16 15 C -0.53 -14.21 9.11 -34.44 -0.31 -14.53 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.47 -7.74 3.21 -121.46 -0.39 -8.13 16 24 C 0.08 0.98 11.01 59.84 0.66 1.64 16 25 C 0.05 0.53 6.30 -2.76 -0.02 0.52 16 26 C -0.09 -0.84 2.96 -89.26 -0.26 -1.10 16 27 H 0.10 1.11 6.93 -51.93 -0.36 0.75 16 28 C -0.14 -1.04 8.89 37.16 0.33 -0.71 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.08 1.05 7.23 -51.93 -0.38 0.67 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 41 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 43 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -34.23 382.72 -9.26 -43.50 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.33 Total: -2.45 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.17 Total: -0.34 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.19 Total: -52.00 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.70 Total: -10.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.23 -9.26 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338561090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.213 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds