Wall clock time and date at job start Tue Mar 31 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99868 * 2 1 4 4 O 1.20819 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99846 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.64155 * 61.69847 * 5 3 2 7 7 C 1.54931 * 110.72560 * 298.54925 * 5 3 2 8 8 N 1.48539 * 103.22754 * 204.22960 * 7 5 3 9 9 C 1.38571 * 111.00376 * 159.71867 * 8 7 5 10 10 N 1.31226 * 126.47425 * 323.79572 * 9 8 7 11 11 N 1.28519 * 109.86299 * 179.81889 * 10 9 8 12 12 C 1.30301 * 110.05245 * 0.45375 * 11 10 9 13 13 C 1.50699 * 126.34572 * 179.69396 * 12 11 10 14 14 C 1.53004 * 109.46694 * 270.03596 * 13 12 11 15 15 C 1.50710 * 109.47020 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00013 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47552 * 59.99840 * 19 17 15 21 21 H 1.48501 * 109.47193 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47167 * 299.99798 * 19 17 15 23 23 N 1.36454 * 126.47405 * 144.10346 * 9 8 7 24 24 C 1.46493 * 127.13560 * 0.02562 * 23 9 8 25 25 C 1.47899 * 105.82047 * 39.20021 * 8 7 5 26 26 C 1.53991 * 107.05935 * 334.67746 * 25 8 7 27 27 H 1.09004 * 110.31451 * 120.14080 * 26 25 8 28 28 C 1.53004 * 110.30880 * 242.30485 * 26 25 8 29 29 H 1.09003 * 109.47185 * 300.00351 * 1 2 3 30 30 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47450 * 60.00017 * 1 2 3 32 32 H 1.09004 * 110.66637 * 322.65866 * 7 5 3 33 33 H 1.08996 * 110.66941 * 85.62275 * 7 5 3 34 34 H 1.09000 * 109.47700 * 30.03813 * 13 12 11 35 35 H 1.08997 * 109.47226 * 150.03980 * 13 12 11 36 36 H 1.08999 * 109.47354 * 299.99972 * 14 13 12 37 37 H 1.09003 * 109.46832 * 60.00653 * 14 13 12 38 38 H 0.96998 * 120.00379 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46621 * 95.12607 * 24 23 9 40 40 H 1.09002 * 109.47421 * 215.12111 * 24 23 9 41 41 H 1.08993 * 109.47506 * 335.12662 * 24 23 9 42 42 H 1.09000 * 109.91311 * 94.02599 * 25 8 7 43 43 H 1.08996 * 109.91927 * 215.11835 * 25 8 7 44 44 H 1.09002 * 109.47599 * 175.71476 * 28 26 25 45 45 H 1.09003 * 109.47145 * 295.71856 * 28 26 25 46 46 H 1.09006 * 109.46716 * 55.71199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9757 0.8119 -0.8973 7 6 4.1496 0.6123 1.2738 8 7 5.4702 1.2747 1.4271 9 6 5.9383 1.1545 2.7258 10 7 5.2164 1.1848 3.8212 11 7 5.9751 1.0402 4.8484 12 6 7.2170 0.9196 4.4731 13 6 8.4096 0.7390 5.3765 14 6 8.9737 2.1095 5.7565 15 6 10.1667 1.9289 6.6595 16 1 10.4904 0.9360 6.9345 17 6 10.8449 3.0313 7.1346 18 7 10.4510 4.2404 6.7993 19 14 12.3240 2.8074 8.2532 20 1 13.3666 2.0229 7.5443 21 1 12.8715 4.1376 8.6222 22 1 11.9101 2.0838 9.4822 23 7 7.2378 0.9882 3.1075 24 6 8.4116 0.9016 2.2354 25 6 5.2533 2.6937 1.0710 26 6 4.0372 2.7419 0.1276 27 1 3.2474 3.3567 0.5594 28 6 4.4482 3.2881 -1.2412 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 3.5156 0.8139 2.1373 33 1 4.2693 -0.4613 1.1284 34 1 8.1050 0.2086 6.2788 35 1 9.1749 0.1624 4.8571 36 1 9.2784 2.6399 4.8543 37 1 8.2083 2.6861 6.2761 38 1 10.9283 5.0161 7.1332 39 1 8.8711 1.8860 2.1458 40 1 9.1307 0.2025 2.6623 41 1 8.1065 0.5520 1.2491 42 1 5.0490 3.2750 1.9701 43 1 6.1347 3.0887 0.5660 44 1 3.5966 3.2453 -1.9203 45 1 4.7775 4.3219 -1.1360 46 1 5.2636 2.6862 -1.6426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338561090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:13 Heat of formation + Delta-G solvation = -23.988217 kcal Electronic energy + Delta-G solvation = -27419.164129 eV Core-core repulsion = 23537.614990 eV Total energy + Delta-G solvation = -3881.549139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.07194 -41.91769 -40.03672 -37.61366 -36.38918 -35.77382 -34.74748 -33.33927 -31.74687 -30.12043 -28.58544 -28.38510 -27.34737 -26.74717 -24.91414 -23.77347 -22.70032 -21.80995 -21.50182 -20.87302 -19.11243 -18.61779 -18.28284 -17.74555 -17.54834 -17.24237 -16.88130 -16.49034 -16.13440 -15.44839 -15.19116 -15.00263 -14.78434 -14.58683 -14.41127 -14.33794 -14.15402 -13.96854 -13.66216 -13.31317 -13.19611 -13.07873 -12.95194 -12.82641 -12.71277 -12.52117 -12.16443 -12.12691 -12.03406 -11.87584 -11.81306 -11.76904 -11.68303 -11.54667 -11.32372 -11.09405 -10.56275 -10.36064 -9.77074 -8.19958 -6.32325 0.64239 0.97579 1.24289 1.44161 1.47341 1.54757 1.64828 1.69366 2.42688 2.66424 3.14530 3.18412 3.20045 3.47260 3.68705 3.81902 3.92211 3.96147 4.07299 4.10119 4.18370 4.28585 4.31570 4.34370 4.46097 4.55403 4.61593 4.64324 4.68154 4.70260 4.71752 4.76528 4.82435 4.90660 4.96728 5.01790 5.07273 5.29111 5.29395 5.38823 5.43214 5.46935 5.59113 5.78577 6.09396 6.16946 6.60124 6.83658 7.37867 7.64392 8.91999 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.002437 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.833656 B =11484.461250 C =11862.449612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.530 6.530 5 C -0.072 4.072 6 H 0.160 0.840 7 C 0.063 3.937 8 N -0.423 5.423 9 C 0.329 3.671 10 N -0.350 5.350 11 N -0.334 5.334 12 C 0.203 3.797 13 C -0.015 4.015 14 C 0.043 3.957 15 C -0.539 4.539 16 H 0.074 0.926 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.289 1.289 22 H -0.268 1.268 23 N -0.463 5.463 24 C 0.072 3.928 25 C 0.048 3.952 26 C -0.082 4.082 27 H 0.079 0.921 28 C -0.135 4.135 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.101 0.899 36 H -0.004 1.004 37 H -0.020 1.020 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.030 0.970 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 -9.802 -21.965 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.419 6.419 5 C -0.091 4.091 6 H 0.178 0.822 7 C -0.064 4.064 8 N -0.148 5.148 9 C -0.028 4.028 10 N -0.194 5.194 11 N -0.174 5.174 12 C -0.066 4.066 13 C -0.055 4.055 14 C 0.005 3.995 15 C -0.577 4.577 16 H 0.092 0.908 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.214 1.214 22 H -0.193 1.193 23 N -0.155 5.155 24 C -0.069 4.069 25 C -0.079 4.079 26 C -0.102 4.102 27 H 0.097 0.903 28 C -0.192 4.192 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.014 0.986 37 H -0.001 1.001 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.049 0.951 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.998 -9.496 -21.406 26.783 hybrid contribution 0.726 0.939 0.748 1.403 sum -12.273 -8.557 -20.657 25.506 Atomic orbital electron populations 1.23573 0.74691 1.05828 1.02517 1.86510 1.25046 1.32448 1.83421 1.23616 0.92010 0.81356 0.71254 1.90666 1.67569 1.37305 1.46358 1.22088 0.86449 0.98481 1.02129 0.82233 1.23157 0.86669 1.00630 0.95974 1.61701 1.27101 1.13597 1.12412 1.22658 0.82868 1.04647 0.92661 1.74366 1.27572 1.22044 0.95391 1.73931 1.00448 1.20606 1.22392 1.25444 0.97216 1.01762 0.82157 1.20184 0.89280 1.00130 0.95913 1.18830 0.94440 0.91080 0.95167 1.21571 1.12855 0.93534 1.29691 0.90780 1.26002 1.00948 0.94800 0.98047 1.70113 1.42243 0.98732 1.46466 0.85451 0.78949 0.77236 0.79123 1.18392 1.21445 1.19304 1.46327 1.08685 1.53211 1.07273 1.22401 0.84649 1.04838 0.95019 1.23193 1.00346 0.85975 0.98399 1.21946 0.95979 0.94112 0.98114 0.90298 1.21810 1.02293 1.01865 0.93262 0.92553 0.84979 0.91357 0.93072 0.86398 0.89264 0.88047 0.98586 1.00142 0.92820 0.90149 0.87700 0.85853 0.95146 0.86951 0.91833 0.91515 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.24 10.55 -51.44 -0.54 -6.79 16 3 C 0.47 9.48 7.26 71.24 0.52 9.99 16 4 O -0.53 -13.58 15.23 21.98 0.33 -13.25 16 5 C -0.07 -1.17 3.10 -10.34 -0.03 -1.20 16 6 H 0.16 1.56 7.87 -2.39 -0.02 1.55 16 7 C 0.06 1.33 5.87 86.65 0.51 1.84 16 8 N -0.42 -10.03 5.28 -693.51 -3.66 -13.69 16 9 C 0.33 10.80 6.55 260.11 1.70 12.51 16 10 N -0.35 -14.24 11.28 -58.01 -0.65 -14.89 16 11 N -0.33 -14.97 12.18 -49.53 -0.60 -15.58 16 12 C 0.20 8.10 7.32 137.64 1.01 9.11 16 13 C -0.02 -0.62 5.53 29.85 0.16 -0.45 16 14 C 0.04 2.23 4.96 29.85 0.15 2.38 16 15 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.94 -56.51 13.29 21.45 0.28 -56.23 16 19 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 N -0.46 -15.03 3.21 -538.19 -1.73 -16.76 16 24 C 0.07 1.59 11.01 127.77 1.41 2.99 16 25 C 0.05 1.05 6.30 86.45 0.54 1.60 16 26 C -0.08 -1.47 2.96 -9.92 -0.03 -1.50 16 27 H 0.08 1.79 6.93 -2.38 -0.02 1.77 16 28 C -0.14 -1.65 8.89 71.98 0.64 -1.01 16 29 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.05 1.39 7.23 -2.38 -0.02 1.37 16 33 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.10 3.41 7.38 -2.39 -0.02 3.39 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.10 2.03 7.42 -2.39 -0.02 2.01 16 41 H 0.12 1.94 8.11 -2.39 -0.02 1.92 16 42 H 0.03 0.87 7.75 -2.39 -0.02 0.85 16 43 H 0.11 2.04 7.69 -2.39 -0.02 2.03 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -77.36 382.72 4.90 -72.46 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.97 Total: 10.53 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 8.47 Total: 9.28 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -6.36 Total: -117.14 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.21 Total: -20.03 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -77.36 4.90 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338561090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.473 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds