Wall clock time and date at job start Tue Mar 31 2020 13:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00057 * 2 1 4 4 N 1.46501 * 109.46942 * 125.00093 * 3 2 1 5 5 C 1.36733 * 127.13624 * 95.19166 * 4 3 2 6 6 C 1.50705 * 126.34780 * 0.02562 * 5 4 3 7 7 C 1.52993 * 109.46937 * 269.71242 * 6 5 4 8 8 H 1.09007 * 109.47431 * 54.99737 * 7 6 5 9 9 O 1.42902 * 109.47330 * 295.00014 * 7 6 5 10 10 C 1.50700 * 109.47399 * 174.99987 * 7 6 5 11 11 H 1.08003 * 119.99897 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00424 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00041 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99992 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47112 * 60.00130 * 14 12 10 16 16 H 1.48506 * 109.46852 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47305 * 299.99617 * 14 12 10 18 18 N 1.30296 * 107.30565 * 179.73301 * 5 4 3 19 19 N 1.28527 * 110.05231 * 0.26354 * 18 5 4 20 20 C 1.31216 * 109.86107 * 0.02562 * 19 18 5 21 21 N 1.38586 * 126.47279 * 180.02562 * 20 19 18 22 22 C 1.40462 * 110.99464 * 294.98382 * 21 20 19 23 23 C 1.54388 * 111.45115 * 187.82528 * 22 21 20 24 24 C 1.50720 * 109.13592 * 284.57411 * 23 22 21 25 25 O 1.44225 * 112.85561 * 91.52158 * 24 23 22 26 26 C 1.43939 * 116.11231 * 318.69247 * 25 24 23 27 27 C 1.47593 * 111.00192 * 63.43368 * 21 20 19 28 28 H 1.08008 * 120.00359 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00319 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00368 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46704 * 5.00252 * 3 2 1 32 32 H 1.08993 * 109.47048 * 245.00307 * 3 2 1 33 33 H 1.09001 * 109.47227 * 29.70996 * 6 5 4 34 34 H 1.09002 * 109.47013 * 149.70927 * 6 5 4 35 35 H 0.96702 * 113.99794 * 299.99796 * 9 7 6 36 36 H 0.97002 * 120.00261 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.08812 * 308.33593 * 22 21 20 38 38 H 1.09004 * 109.08603 * 67.39055 * 22 21 20 39 39 H 1.09006 * 109.52432 * 44.46793 * 23 22 21 40 40 H 1.09001 * 109.53340 * 164.60181 * 23 22 21 41 41 H 1.09003 * 108.81164 * 212.39456 * 24 23 22 42 42 H 1.09000 * 108.80813 * 330.64981 * 24 23 22 43 43 H 1.08997 * 108.99858 * 79.86039 * 26 25 24 44 44 H 1.08998 * 108.99472 * 198.70263 * 26 25 24 45 45 H 1.09008 * 109.64404 * 272.67973 * 27 21 20 46 46 H 1.09000 * 109.64294 * 33.30162 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3182 0.9923 1.1193 6 6 5.1070 0.5149 -0.0727 7 6 5.0331 -1.0110 -0.1552 8 1 3.9890 -1.3239 -0.1713 9 8 5.6838 -1.5817 0.9819 10 6 5.7174 -1.4799 -1.4133 11 1 6.1611 -0.7614 -2.0866 12 6 5.7780 -2.8262 -1.7045 13 7 5.2390 -3.7013 -0.8840 14 14 6.6256 -3.4072 -3.2644 15 1 8.0478 -2.9804 -3.2433 16 1 6.5550 -4.8885 -3.3438 17 1 5.9484 -2.8149 -4.4458 18 7 4.7734 1.1639 2.3281 19 7 3.8325 1.5804 3.0983 20 6 2.7173 1.6972 2.4168 21 7 1.4920 2.1191 2.9079 22 6 0.9901 1.2116 3.8553 23 6 -0.4556 1.5655 4.2655 24 6 -0.4294 2.7543 5.1917 25 8 -0.5514 4.0107 4.4941 26 6 0.1908 4.1284 3.2664 27 6 1.5635 3.5160 3.3790 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 4.6901 0.9485 -0.9817 34 1 6.1472 0.8231 0.0329 35 1 6.6181 -1.3452 1.0602 36 1 5.2813 -4.6485 -1.0890 37 1 1.0043 0.2081 3.4300 38 1 1.6258 1.2324 4.7405 39 1 -1.0373 1.8091 3.3764 40 1 -0.9084 0.7151 4.7753 41 1 -1.2518 2.6651 5.9014 42 1 0.5104 2.7489 5.7439 43 1 -0.3580 3.6254 2.4703 44 1 0.2939 5.1838 3.0140 45 1 1.8894 3.5358 4.4190 46 1 2.2660 4.0755 2.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340318018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:40 Heat of formation + Delta-G solvation = 21.549713 kcal Electronic energy + Delta-G solvation = -28637.936742 eV Core-core repulsion = 24758.362276 eV Total energy + Delta-G solvation = -3879.574466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.67878 -39.88617 -36.64257 -36.19345 -35.71864 -32.91963 -32.59546 -32.19132 -31.32154 -29.45108 -27.73675 -26.71136 -26.27912 -25.26250 -22.63505 -21.72642 -21.12188 -20.74973 -20.36424 -19.50291 -17.79926 -17.15250 -17.02108 -16.36324 -16.16858 -15.49283 -15.19179 -14.96160 -14.80409 -14.65033 -14.22114 -13.80756 -13.74607 -13.60514 -13.37269 -12.98304 -12.78957 -12.66900 -12.31544 -11.91693 -11.60704 -11.48008 -11.46458 -11.30918 -11.18247 -11.09399 -10.89744 -10.87896 -10.81641 -10.28572 -10.09910 -9.83463 -9.76184 -9.52100 -9.31771 -8.76417 -8.68325 -8.63627 -8.07578 -6.08861 -4.28996 1.93362 2.13880 2.67577 3.23816 3.26292 3.30095 3.31916 3.54053 3.69949 4.31498 4.47667 4.60025 4.68299 4.76532 4.80536 4.85182 4.95130 5.02874 5.05162 5.18446 5.20608 5.27967 5.37354 5.41166 5.45275 5.49857 5.53977 5.69313 5.72877 5.85010 5.87682 5.97076 6.11356 6.24484 6.27882 6.38656 6.57056 6.64920 6.67786 6.68480 6.90328 7.02082 7.44100 7.56413 7.73851 8.04201 8.73325 9.15505 9.35145 9.50911 10.94994 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.003287 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.609635 B = 8515.403552 C = 8889.707912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.169 4.169 3 C 0.144 3.856 4 N -0.462 5.462 5 C 0.223 3.777 6 C -0.067 4.067 7 C 0.242 3.758 8 H 0.052 0.948 9 O -0.558 6.558 10 C -0.577 4.577 11 H 0.058 0.942 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.288 5.288 19 N -0.310 5.310 20 C 0.323 3.677 21 N -0.468 5.468 22 C 0.074 3.926 23 C -0.151 4.151 24 C 0.058 3.942 25 O -0.393 6.393 26 C 0.065 3.935 27 C 0.040 3.960 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.349 0.651 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 13.046 4.953 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.021 3.979 4 N -0.155 5.155 5 C -0.044 4.044 6 C -0.107 4.107 7 C 0.183 3.817 8 H 0.070 0.930 9 O -0.360 6.360 10 C -0.615 4.615 11 H 0.077 0.923 12 C -0.125 4.125 13 N -0.492 5.492 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.127 5.127 19 N -0.154 5.154 20 C -0.033 4.033 21 N -0.194 5.194 22 C -0.054 4.054 23 C -0.189 4.189 24 C -0.018 4.018 25 O -0.313 6.313 26 C -0.012 4.012 27 C -0.086 4.086 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.193 0.807 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.287 12.792 5.990 19.392 hybrid contribution 0.687 -0.574 -1.680 1.904 sum -12.599 12.218 4.311 18.072 Atomic orbital electron populations 1.23813 0.95416 1.01959 0.99203 1.23208 0.96375 0.98450 1.00764 1.20874 0.91749 0.97365 0.87914 1.46360 1.10219 1.49793 1.09085 1.25349 0.81281 0.99336 0.98449 1.21278 0.98107 1.02167 0.89162 1.19280 0.94638 0.82421 0.85349 0.92995 1.86581 1.25508 1.75794 1.48144 1.21560 1.39993 0.92562 1.07370 0.92343 1.25020 0.94477 0.96842 0.96183 1.70066 1.42022 1.01762 1.35323 0.86707 0.80323 0.77665 0.83517 1.20005 1.21198 1.20129 1.74056 1.22534 1.17122 0.99018 1.74507 0.96837 1.18161 1.25941 1.21921 0.92373 1.05495 0.83462 1.55752 1.19752 1.03247 1.40623 1.21194 0.94848 0.95563 0.93827 1.22078 0.96506 0.99102 1.01178 1.22406 1.02017 0.83263 0.94095 1.88275 1.70176 1.35077 1.37797 1.22415 0.90683 1.00986 0.87122 1.22487 0.98617 0.86339 1.01186 0.88477 0.87988 0.85931 0.88597 0.87818 0.90403 0.89101 0.80657 0.92814 0.90263 0.93774 0.89654 0.89346 0.89293 0.93067 0.91585 0.88725 0.91584 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 14.32 29.02 0.42 -1.42 16 2 C -0.17 -2.33 9.85 -36.02 -0.35 -2.68 16 3 C 0.14 1.88 6.50 -5.19 -0.03 1.84 16 4 N -0.46 -7.61 2.79 -115.36 -0.32 -7.93 16 5 C 0.22 4.31 7.09 -154.02 -1.09 3.22 16 6 C -0.07 -1.29 5.20 -27.88 -0.15 -1.44 16 7 C 0.24 5.81 2.81 -27.89 -0.08 5.73 16 8 H 0.05 1.37 7.32 -51.93 -0.38 0.99 16 9 O -0.56 -14.45 12.48 -35.23 -0.44 -14.89 16 10 C -0.58 -14.87 8.76 -34.44 -0.30 -15.17 16 11 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.56 12.84 55.43 0.71 -23.84 16 14 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.29 -6.14 12.18 32.99 0.40 -5.73 16 19 N -0.31 -6.13 12.22 30.32 0.37 -5.76 16 20 C 0.32 5.34 6.11 -318.87 -1.95 3.39 16 21 N -0.47 -5.96 4.05 -179.24 -0.73 -6.69 16 22 C 0.07 0.90 4.91 -6.43 -0.03 0.87 16 23 C -0.15 -1.34 5.67 -27.15 -0.15 -1.49 16 24 C 0.06 0.52 6.26 36.02 0.23 0.75 16 25 O -0.39 -4.14 10.92 -35.23 -0.38 -4.52 16 26 C 0.06 0.60 6.35 36.02 0.23 0.82 16 27 C 0.04 0.45 5.28 -4.58 -0.02 0.42 16 28 H 0.10 0.89 7.84 -52.48 -0.41 0.48 16 29 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.12 2.10 7.23 -52.49 -0.38 1.72 16 31 H 0.10 1.03 7.79 -51.93 -0.40 0.62 16 32 H 0.10 1.27 7.10 -51.93 -0.37 0.91 16 33 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 34 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.35 8.19 9.04 45.56 0.41 8.60 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 38 H 0.04 0.59 7.62 -51.93 -0.40 0.19 16 39 H 0.08 0.78 7.25 -51.93 -0.38 0.40 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.49 6.61 -51.93 -0.34 0.14 16 43 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.78 6.85 -51.92 -0.36 0.43 16 46 H 0.09 0.99 7.83 -51.93 -0.41 0.58 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -32.36 374.45 -9.39 -41.74 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.23 Total: 9.73 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.39 Total: -3.07 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.44 Total: -49.96 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.82 Total: -19.41 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.36 -9.39 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340318018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.294 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds