Wall clock time and date at job start Tue Mar 31 2020 13:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00057 * 2 1 4 4 N 1.46501 * 109.46942 * 125.00093 * 3 2 1 5 5 C 1.36733 * 127.13624 * 95.19166 * 4 3 2 6 6 C 1.50705 * 126.34780 * 0.02562 * 5 4 3 7 7 C 1.52993 * 109.46937 * 269.71242 * 6 5 4 8 8 H 1.09007 * 109.47431 * 54.99737 * 7 6 5 9 9 O 1.42902 * 109.47330 * 295.00014 * 7 6 5 10 10 C 1.50700 * 109.47399 * 174.99987 * 7 6 5 11 11 H 1.08003 * 119.99897 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00424 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00041 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99992 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47112 * 60.00130 * 14 12 10 16 16 H 1.48506 * 109.46852 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47305 * 299.99617 * 14 12 10 18 18 N 1.30296 * 107.30565 * 179.73301 * 5 4 3 19 19 N 1.28527 * 110.05231 * 0.26354 * 18 5 4 20 20 C 1.31216 * 109.86107 * 0.02562 * 19 18 5 21 21 N 1.38586 * 126.47279 * 180.02562 * 20 19 18 22 22 C 1.40462 * 110.99464 * 294.98382 * 21 20 19 23 23 C 1.54388 * 111.45115 * 187.82528 * 22 21 20 24 24 C 1.50720 * 109.13592 * 284.57411 * 23 22 21 25 25 O 1.44225 * 112.85561 * 91.52158 * 24 23 22 26 26 C 1.43939 * 116.11231 * 318.69247 * 25 24 23 27 27 C 1.47593 * 111.00192 * 63.43368 * 21 20 19 28 28 H 1.08008 * 120.00359 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00319 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00368 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46704 * 5.00252 * 3 2 1 32 32 H 1.08993 * 109.47048 * 245.00307 * 3 2 1 33 33 H 1.09001 * 109.47227 * 29.70996 * 6 5 4 34 34 H 1.09002 * 109.47013 * 149.70927 * 6 5 4 35 35 H 0.96702 * 113.99794 * 299.99796 * 9 7 6 36 36 H 0.97002 * 120.00261 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.08812 * 308.33593 * 22 21 20 38 38 H 1.09004 * 109.08603 * 67.39055 * 22 21 20 39 39 H 1.09006 * 109.52432 * 44.46793 * 23 22 21 40 40 H 1.09001 * 109.53340 * 164.60181 * 23 22 21 41 41 H 1.09003 * 108.81164 * 212.39456 * 24 23 22 42 42 H 1.09000 * 108.80813 * 330.64981 * 24 23 22 43 43 H 1.08997 * 108.99858 * 79.86039 * 26 25 24 44 44 H 1.08998 * 108.99472 * 198.70263 * 26 25 24 45 45 H 1.09008 * 109.64404 * 272.67973 * 27 21 20 46 46 H 1.09000 * 109.64294 * 33.30162 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3182 0.9923 1.1193 6 6 5.1070 0.5149 -0.0727 7 6 5.0331 -1.0110 -0.1552 8 1 3.9890 -1.3239 -0.1713 9 8 5.6838 -1.5817 0.9819 10 6 5.7174 -1.4799 -1.4133 11 1 6.1611 -0.7614 -2.0866 12 6 5.7780 -2.8262 -1.7045 13 7 5.2390 -3.7013 -0.8840 14 14 6.6256 -3.4072 -3.2644 15 1 8.0478 -2.9804 -3.2433 16 1 6.5550 -4.8885 -3.3438 17 1 5.9484 -2.8149 -4.4458 18 7 4.7734 1.1639 2.3281 19 7 3.8325 1.5804 3.0983 20 6 2.7173 1.6972 2.4168 21 7 1.4920 2.1191 2.9079 22 6 0.9901 1.2116 3.8553 23 6 -0.4556 1.5655 4.2655 24 6 -0.4294 2.7543 5.1917 25 8 -0.5514 4.0107 4.4941 26 6 0.1908 4.1284 3.2664 27 6 1.5635 3.5160 3.3790 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 4.6901 0.9485 -0.9817 34 1 6.1472 0.8231 0.0329 35 1 6.6181 -1.3452 1.0602 36 1 5.2813 -4.6485 -1.0890 37 1 1.0043 0.2081 3.4300 38 1 1.6258 1.2324 4.7405 39 1 -1.0373 1.8091 3.3764 40 1 -0.9084 0.7151 4.7753 41 1 -1.2518 2.6651 5.9014 42 1 0.5104 2.7489 5.7439 43 1 -0.3580 3.6254 2.4703 44 1 0.2939 5.1838 3.0140 45 1 1.8894 3.5358 4.4190 46 1 2.2660 4.0755 2.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340318018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:39 Heat of formation + Delta-G solvation = -0.350751 kcal Electronic energy + Delta-G solvation = -28638.886417 eV Core-core repulsion = 24758.362276 eV Total energy + Delta-G solvation = -3880.524141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.06296 -40.80511 -38.07738 -37.46731 -37.03608 -34.26365 -33.83481 -33.77033 -32.79303 -30.65781 -29.15826 -27.81357 -27.32262 -26.93673 -23.76493 -23.45516 -22.08867 -21.86087 -21.55053 -20.73849 -19.19805 -18.71044 -17.93495 -17.58188 -17.34727 -16.67505 -16.55773 -16.36702 -16.16272 -15.79219 -15.75474 -15.47041 -15.00725 -14.57020 -14.49745 -14.42405 -14.06976 -13.54177 -13.39249 -13.22751 -12.95411 -12.87800 -12.70810 -12.68299 -12.49114 -12.47634 -12.43088 -12.19702 -12.05010 -11.70996 -11.58379 -11.22348 -11.10444 -10.70168 -10.54978 -10.51103 -10.43468 -9.89443 -9.80666 -8.13348 -6.39979 0.65746 0.97059 1.43277 1.45018 1.52439 1.54403 1.78590 2.40080 2.60538 2.83357 3.13811 3.45295 3.60328 3.68899 3.76275 3.82163 3.86715 3.95496 4.00471 4.13327 4.21673 4.26606 4.30400 4.42336 4.44689 4.49136 4.57069 4.64295 4.70573 4.77618 4.83260 4.92231 4.92694 4.96539 5.05806 5.07132 5.19132 5.49509 5.55877 5.61892 5.68909 5.72397 5.74686 6.03064 6.19859 6.24889 6.71209 7.33509 7.53308 7.70612 8.90935 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.003287 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.609635 B = 8515.403552 C = 8889.707912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.203 4.203 3 C 0.142 3.858 4 N -0.457 5.457 5 C 0.209 3.791 6 C -0.050 4.050 7 C 0.244 3.756 8 H 0.021 0.979 9 O -0.580 6.580 10 C -0.583 4.583 11 H 0.071 0.929 12 C 0.027 3.973 13 N -0.901 5.901 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.263 1.263 18 N -0.322 5.322 19 N -0.348 5.348 20 C 0.341 3.659 21 N -0.455 5.455 22 C 0.074 3.926 23 C -0.135 4.135 24 C 0.057 3.943 25 O -0.405 6.405 26 C 0.071 3.929 27 C 0.043 3.957 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.357 0.643 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 14.883 3.782 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.222 4.222 3 C 0.021 3.979 4 N -0.149 5.149 5 C -0.060 4.060 6 C -0.090 4.090 7 C 0.186 3.814 8 H 0.039 0.961 9 O -0.384 6.384 10 C -0.621 4.621 11 H 0.089 0.911 12 C -0.175 4.175 13 N -0.538 5.538 14 Si 0.784 3.216 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.188 1.188 18 N -0.162 5.162 19 N -0.192 5.192 20 C -0.016 4.016 21 N -0.182 5.182 22 C -0.055 4.055 23 C -0.173 4.173 24 C -0.019 4.019 25 O -0.325 6.325 26 C -0.006 4.006 27 C -0.083 4.083 28 H 0.148 0.852 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.202 0.798 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.073 0.927 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.321 14.656 4.803 21.739 hybrid contribution 1.201 -1.141 -1.244 2.072 sum -14.120 13.515 3.560 19.867 Atomic orbital electron populations 1.24078 0.94239 1.03728 0.94737 1.22922 0.97296 0.96988 1.04969 1.21170 0.91747 0.98020 0.86934 1.46537 1.09725 1.48725 1.09958 1.25190 0.82675 1.00215 0.97909 1.20958 0.98846 0.98752 0.90451 1.19126 0.92587 0.85314 0.84393 0.96141 1.86535 1.26216 1.76713 1.48974 1.21979 1.39237 0.92929 1.07911 0.91060 1.25896 0.95151 0.97159 0.99333 1.70230 1.44048 1.01889 1.37626 0.85607 0.79410 0.76756 0.79779 1.19250 1.21620 1.18772 1.73940 1.24067 1.18177 0.99981 1.74416 0.97910 1.20107 1.26775 1.22346 0.92842 1.03089 0.83334 1.56112 1.17169 1.04124 1.40746 1.21235 0.96932 0.94657 0.92682 1.22015 0.93758 0.99903 1.01638 1.22488 1.02463 0.82752 0.94220 1.88271 1.70217 1.35777 1.38271 1.22450 0.89029 1.02103 0.86997 1.22559 1.00258 0.85121 1.00411 0.85208 0.87468 0.90560 0.85296 0.87196 0.88051 0.88635 0.79831 0.93131 0.92265 0.95528 0.88893 0.87371 0.87169 0.94077 0.90687 0.86650 0.92664 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 14.32 67.79 0.97 -1.60 16 2 C -0.20 -5.52 9.85 25.65 0.25 -5.27 16 3 C 0.14 3.53 6.50 85.63 0.56 4.09 16 4 N -0.46 -15.06 2.79 -518.90 -1.45 -16.51 16 5 C 0.21 8.26 7.09 137.64 0.98 9.23 16 6 C -0.05 -1.96 5.20 29.85 0.16 -1.80 16 7 C 0.24 12.11 2.81 29.85 0.08 12.19 16 8 H 0.02 1.15 7.32 -2.38 -0.02 1.13 16 9 O -0.58 -31.38 12.48 -148.98 -1.86 -33.24 16 10 C -0.58 -30.25 8.76 25.60 0.22 -30.03 16 11 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 12 C 0.03 1.47 5.40 84.66 0.46 1.93 16 13 N -0.90 -53.21 12.84 21.45 0.28 -52.94 16 14 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 18 N -0.32 -14.21 12.18 -49.54 -0.60 -14.81 16 19 N -0.35 -14.18 12.22 -58.00 -0.71 -14.89 16 20 C 0.34 11.26 6.11 260.11 1.59 12.85 16 21 N -0.46 -11.09 4.05 -720.98 -2.92 -14.00 16 22 C 0.07 1.74 4.91 87.94 0.43 2.17 16 23 C -0.14 -2.07 5.67 30.33 0.17 -1.90 16 24 C 0.06 0.88 6.26 71.24 0.45 1.33 16 25 O -0.41 -7.37 10.92 -148.98 -1.63 -9.00 16 26 C 0.07 1.09 6.35 71.25 0.45 1.54 16 27 C 0.04 0.88 5.28 85.44 0.45 1.33 16 28 H 0.13 1.76 7.84 -2.91 -0.02 1.74 16 29 H 0.11 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.08 2.81 7.23 -2.91 -0.02 2.79 16 31 H 0.13 2.32 7.79 -2.39 -0.02 2.31 16 32 H 0.11 2.56 7.10 -2.39 -0.02 2.54 16 33 H 0.10 3.41 7.18 -2.39 -0.02 3.40 16 34 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.36 17.44 9.04 -74.06 -0.67 16.77 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 38 H 0.03 0.72 7.62 -2.39 -0.02 0.70 16 39 H 0.09 1.35 7.25 -2.38 -0.02 1.33 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 0.73 6.61 -2.39 -0.02 0.72 16 43 H 0.07 1.06 7.26 -2.39 -0.02 1.04 16 44 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.28 6.85 -2.38 -0.02 1.26 16 46 H 0.09 1.82 7.83 -2.39 -0.02 1.80 16 Total: -1.00 -73.01 374.45 0.68 -72.33 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.32 Total: 33.13 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 7.22 Total: 6.06 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -5.40 Total: -113.15 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -3.49 Total: -42.24 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -73.01 0.68 -72.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340318018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.979 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds