Wall clock time and date at job start Tue Mar 31 2020 14:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00152 * 2 1 4 4 N 1.46493 * 109.47603 * 234.05631 * 3 2 1 5 5 C 1.36736 * 127.13805 * 83.46997 * 4 3 2 6 6 C 1.50707 * 126.34538 * 359.96547 * 5 4 3 7 7 C 1.52998 * 109.47149 * 95.41636 * 6 5 4 8 8 H 1.09001 * 109.47303 * 56.06713 * 7 6 5 9 9 O 1.42900 * 109.46937 * 296.06927 * 7 6 5 10 10 C 1.50690 * 109.47073 * 176.06742 * 7 6 5 11 11 H 1.08005 * 120.00306 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00278 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99380 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00250 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47235 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47189 * 120.00246 * 14 12 10 17 17 H 1.48503 * 109.47180 * 240.00179 * 14 12 10 18 18 N 1.30296 * 107.30758 * 179.83531 * 5 4 3 19 19 N 1.28534 * 110.05092 * 0.44071 * 18 5 4 20 20 C 1.31211 * 109.85912 * 359.72273 * 19 18 5 21 21 N 1.38584 * 126.47173 * 179.97438 * 20 19 18 22 22 C 1.47014 * 111.00021 * 254.05512 * 21 20 19 23 23 C 1.53096 * 109.25983 * 182.39420 * 22 21 20 24 24 O 1.43017 * 109.25416 * 303.15355 * 23 22 21 25 25 C 1.43011 * 113.74560 * 58.67018 * 24 23 22 26 26 H 1.09002 * 109.50654 * 61.26051 * 25 24 23 27 27 C 1.52991 * 109.51234 * 181.34994 * 25 24 23 28 28 C 1.47007 * 110.99915 * 17.68987 * 21 20 19 29 29 H 1.08007 * 120.00103 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00363 * 359.72234 * 1 2 3 31 31 H 1.08008 * 120.00398 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46889 * 354.06149 * 3 2 1 33 33 H 1.09000 * 109.46854 * 114.05150 * 3 2 1 34 34 H 1.08998 * 109.46849 * 215.41657 * 6 5 4 35 35 H 1.08996 * 109.46866 * 335.41094 * 6 5 4 36 36 H 0.96701 * 113.99910 * 299.99805 * 9 7 6 37 37 H 0.96998 * 119.99518 * 179.97438 * 13 12 10 38 38 H 1.09010 * 109.50302 * 302.32781 * 22 21 20 39 39 H 1.09000 * 109.50706 * 62.41435 * 22 21 20 40 40 H 1.09003 * 109.50894 * 63.08313 * 23 22 21 41 41 H 1.08993 * 109.50993 * 183.17377 * 23 22 21 42 42 H 1.08999 * 109.47097 * 59.99813 * 27 25 24 43 43 H 1.08997 * 109.47375 * 180.02562 * 27 25 24 44 44 H 1.08999 * 109.47106 * 300.00204 * 27 25 24 45 45 H 1.08997 * 109.50810 * 297.54045 * 28 21 20 46 46 H 1.09004 * 109.50856 * 57.67923 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0098 1.3227 -1.1181 5 6 2.7463 1.6577 -2.4174 6 6 1.4133 2.0827 -2.9775 7 6 1.3337 3.6104 -3.0010 8 1 2.1741 4.0094 -3.5690 9 8 1.3826 4.1105 -1.6632 10 6 0.0418 4.0362 -3.6495 11 1 -0.6533 3.2916 -4.0086 12 6 -0.2535 5.3763 -3.7835 13 7 0.5926 6.2830 -3.3457 14 14 -1.8552 5.9041 -4.5867 15 1 -2.6264 4.7009 -4.9907 16 1 -2.6530 6.7032 -3.6222 17 1 -1.5595 6.7276 -5.7865 18 7 3.8619 1.5440 -3.0809 19 7 4.8030 1.1541 -2.2971 20 6 4.3357 1.0025 -1.0804 21 7 5.0531 0.5938 0.0327 22 6 4.7181 -0.7907 0.3962 23 6 5.4859 -1.1802 1.6622 24 8 6.8871 -1.0033 1.4372 25 6 7.2490 0.3338 1.0817 26 1 6.9818 1.0111 1.8929 27 6 8.7566 0.4059 0.8317 28 6 6.4989 0.7387 -0.1901 29 1 -0.5401 -0.9354 -0.0004 30 1 -0.5401 0.9353 0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 1.3599 2.1308 -0.1063 33 1 2.6078 1.4103 0.9385 34 1 1.3059 1.6976 -3.9915 35 1 0.6134 1.6867 -2.3519 36 1 0.6630 3.7959 -1.0992 37 1 0.3851 7.2258 -3.4403 38 1 3.6468 -0.8693 0.5816 39 1 4.9965 -1.4586 -0.4190 40 1 5.1675 -0.5470 2.4903 41 1 5.2842 -2.2238 1.9036 42 1 9.0229 -0.2703 0.0194 43 1 9.0318 1.4253 0.5613 44 1 9.2893 0.1141 1.7368 45 1 6.8064 0.0951 -1.0144 46 1 6.7277 1.7764 -0.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355961276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:03 Heat of formation + Delta-G solvation = 14.966770 kcal Electronic energy + Delta-G solvation = -28451.485466 eV Core-core repulsion = 24571.625542 eV Total energy + Delta-G solvation = -3879.859924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63716 -39.86840 -36.46999 -36.24679 -35.56112 -33.10429 -32.62083 -32.20585 -31.37476 -29.28603 -27.75013 -26.78398 -25.93444 -25.30690 -23.29961 -21.88306 -21.33696 -20.86254 -19.98906 -19.69533 -17.59719 -17.02132 -16.68353 -16.34962 -16.12280 -15.51361 -15.35369 -14.85738 -14.67225 -14.63568 -14.52544 -14.18477 -13.84518 -13.58526 -13.19066 -12.94651 -12.79748 -12.55429 -12.30079 -12.22885 -11.84440 -11.55634 -11.46816 -11.38241 -11.19086 -11.10364 -10.96155 -10.84139 -10.79089 -10.36238 -10.14321 -9.99316 -9.83832 -9.66659 -9.48886 -9.11078 -8.65065 -8.47090 -7.94755 -6.07398 -4.27236 1.81541 2.11731 2.60480 3.23078 3.26673 3.32048 3.34645 3.44113 3.67032 4.32916 4.45325 4.58734 4.62683 4.69075 4.72518 4.84166 4.93127 4.96852 5.04935 5.13089 5.18959 5.27000 5.30415 5.40157 5.45825 5.48891 5.54808 5.59625 5.65789 5.69324 5.82472 5.95291 6.09219 6.15366 6.24712 6.31955 6.32553 6.45762 6.55631 6.66508 6.86790 6.89341 7.41709 7.63959 7.76296 8.05327 8.74753 9.18869 9.22242 9.48949 10.96719 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003257 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.982324 B = 8594.869723 C = 9318.868385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.188 4.188 3 C 0.139 3.861 4 N -0.462 5.462 5 C 0.227 3.773 6 C -0.063 4.063 7 C 0.237 3.763 8 H 0.065 0.935 9 O -0.561 6.561 10 C -0.574 4.574 11 H 0.060 0.940 12 C 0.080 3.920 13 N -0.855 5.855 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 N -0.298 5.298 19 N -0.318 5.318 20 C 0.327 3.673 21 N -0.452 5.452 22 C 0.016 3.984 23 C 0.069 3.931 24 O -0.381 6.381 25 C 0.089 3.911 26 H 0.069 0.931 27 C -0.144 4.144 28 C 0.042 3.958 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.337 0.663 37 H 0.261 0.739 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -14.945 13.140 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.207 4.207 3 C 0.016 3.984 4 N -0.155 5.155 5 C -0.040 4.040 6 C -0.103 4.103 7 C 0.179 3.821 8 H 0.083 0.917 9 O -0.363 6.363 10 C -0.612 4.612 11 H 0.078 0.922 12 C -0.126 4.126 13 N -0.491 5.491 14 Si 0.718 3.282 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 N -0.137 5.137 19 N -0.162 5.162 20 C -0.029 4.029 21 N -0.176 5.176 22 C -0.111 4.111 23 C -0.008 4.008 24 O -0.300 6.300 25 C 0.031 3.969 26 H 0.087 0.913 27 C -0.201 4.201 28 C -0.085 4.085 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.181 0.819 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.944 -14.268 12.190 20.378 hybrid contribution -2.386 -0.172 0.182 2.399 sum 5.558 -14.440 12.372 19.811 Atomic orbital electron populations 1.24031 0.95480 1.02905 0.96736 1.23125 0.96465 0.97819 1.03290 1.20943 0.91837 0.97146 0.88475 1.46075 1.08176 1.51178 1.10094 1.25285 0.99430 0.99485 0.79827 1.21218 0.85868 1.02367 1.00881 1.19429 0.97919 0.83238 0.81527 0.91694 1.86678 1.50783 1.75035 1.23805 1.21595 1.04957 0.92304 1.42298 0.92218 1.25045 0.96646 0.96734 0.94209 1.70097 1.34943 1.00767 1.43260 0.86584 0.83573 0.78771 0.79262 1.19614 1.20909 1.20796 1.74005 0.96023 1.18584 1.25052 1.74487 1.24311 1.20045 0.97369 1.22220 0.83470 1.05425 0.91806 1.58791 1.07187 1.21993 1.29655 1.23057 1.01755 0.87276 0.99057 1.22625 0.80931 1.02018 0.95260 1.87996 1.23260 1.29096 1.89633 1.22251 0.95349 0.83953 0.95327 0.91272 1.21733 0.92545 1.02914 1.02923 1.22759 0.83585 1.04024 0.98149 0.87782 0.87371 0.87296 0.87445 0.87907 0.88664 0.91038 0.81914 0.92914 0.89267 0.92690 0.91946 0.87899 0.91575 0.90559 0.91413 0.91661 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 14.32 29.02 0.42 -1.02 16 2 C -0.19 -1.98 9.29 -36.02 -0.33 -2.31 16 3 C 0.14 1.78 5.78 -5.20 -0.03 1.75 16 4 N -0.46 -7.75 2.79 -115.37 -0.32 -8.07 16 5 C 0.23 4.53 7.07 -154.01 -1.09 3.45 16 6 C -0.06 -1.25 5.22 -27.88 -0.15 -1.40 16 7 C 0.24 5.81 2.82 -27.89 -0.08 5.73 16 8 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 9 O -0.56 -13.55 12.03 -35.23 -0.42 -13.98 16 10 C -0.57 -14.99 8.76 -34.44 -0.30 -15.29 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.84 12.84 55.43 0.71 -24.13 16 14 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.30 -6.61 12.18 32.99 0.40 -6.21 16 19 N -0.32 -6.50 11.39 30.31 0.35 -6.15 16 20 C 0.33 5.64 6.94 -318.87 -2.21 3.43 16 21 N -0.45 -6.14 4.70 -174.20 -0.82 -6.95 16 22 C 0.02 0.18 5.58 -3.71 -0.02 0.16 16 23 C 0.07 0.61 7.01 37.21 0.26 0.87 16 24 O -0.38 -4.11 10.47 -35.23 -0.37 -4.48 16 25 C 0.09 0.91 3.42 -26.68 -0.09 0.82 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 C -0.14 -1.18 9.57 37.15 0.36 -0.83 16 28 C 0.04 0.54 4.39 -3.71 -0.02 0.52 16 29 H 0.10 0.81 8.06 -52.48 -0.42 0.38 16 30 H 0.11 1.00 7.85 -52.48 -0.41 0.59 16 31 H 0.11 1.08 6.51 -52.48 -0.34 0.74 16 32 H 0.11 1.42 6.16 -51.93 -0.32 1.10 16 33 H 0.10 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 36 H 0.34 6.92 7.94 45.56 0.36 7.28 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.09 0.87 5.40 -51.92 -0.28 0.59 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -33.47 376.16 -9.64 -43.11 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.43 Total: 7.75 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.38 Total: -2.05 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.32 Total: -51.53 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.79 Total: -18.46 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.47 -9.64 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.074 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds