Wall clock time and date at job start Tue Mar 31 2020 14:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00152 * 2 1 4 4 N 1.46493 * 109.47603 * 234.05631 * 3 2 1 5 5 C 1.36736 * 127.13805 * 83.46997 * 4 3 2 6 6 C 1.50707 * 126.34538 * 359.96547 * 5 4 3 7 7 C 1.52998 * 109.47149 * 95.41636 * 6 5 4 8 8 H 1.09001 * 109.47303 * 56.06713 * 7 6 5 9 9 O 1.42900 * 109.46937 * 296.06927 * 7 6 5 10 10 C 1.50690 * 109.47073 * 176.06742 * 7 6 5 11 11 H 1.08005 * 120.00306 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00278 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99380 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00250 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47235 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47189 * 120.00246 * 14 12 10 17 17 H 1.48503 * 109.47180 * 240.00179 * 14 12 10 18 18 N 1.30296 * 107.30758 * 179.83531 * 5 4 3 19 19 N 1.28534 * 110.05092 * 0.44071 * 18 5 4 20 20 C 1.31211 * 109.85912 * 359.72273 * 19 18 5 21 21 N 1.38584 * 126.47173 * 179.97438 * 20 19 18 22 22 C 1.47014 * 111.00021 * 254.05512 * 21 20 19 23 23 C 1.53096 * 109.25983 * 182.39420 * 22 21 20 24 24 O 1.43017 * 109.25416 * 303.15355 * 23 22 21 25 25 C 1.43011 * 113.74560 * 58.67018 * 24 23 22 26 26 H 1.09002 * 109.50654 * 61.26051 * 25 24 23 27 27 C 1.52991 * 109.51234 * 181.34994 * 25 24 23 28 28 C 1.47007 * 110.99915 * 17.68987 * 21 20 19 29 29 H 1.08007 * 120.00103 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00363 * 359.72234 * 1 2 3 31 31 H 1.08008 * 120.00398 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46889 * 354.06149 * 3 2 1 33 33 H 1.09000 * 109.46854 * 114.05150 * 3 2 1 34 34 H 1.08998 * 109.46849 * 215.41657 * 6 5 4 35 35 H 1.08996 * 109.46866 * 335.41094 * 6 5 4 36 36 H 0.96701 * 113.99910 * 299.99805 * 9 7 6 37 37 H 0.96998 * 119.99518 * 179.97438 * 13 12 10 38 38 H 1.09010 * 109.50302 * 302.32781 * 22 21 20 39 39 H 1.09000 * 109.50706 * 62.41435 * 22 21 20 40 40 H 1.09003 * 109.50894 * 63.08313 * 23 22 21 41 41 H 1.08993 * 109.50993 * 183.17377 * 23 22 21 42 42 H 1.08999 * 109.47097 * 59.99813 * 27 25 24 43 43 H 1.08997 * 109.47375 * 180.02562 * 27 25 24 44 44 H 1.08999 * 109.47106 * 300.00204 * 27 25 24 45 45 H 1.08997 * 109.50810 * 297.54045 * 28 21 20 46 46 H 1.09004 * 109.50856 * 57.67923 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0098 1.3227 -1.1181 5 6 2.7463 1.6577 -2.4174 6 6 1.4133 2.0827 -2.9775 7 6 1.3337 3.6104 -3.0010 8 1 2.1741 4.0094 -3.5690 9 8 1.3826 4.1105 -1.6632 10 6 0.0418 4.0362 -3.6495 11 1 -0.6533 3.2916 -4.0086 12 6 -0.2535 5.3763 -3.7835 13 7 0.5926 6.2830 -3.3457 14 14 -1.8552 5.9041 -4.5867 15 1 -2.6264 4.7009 -4.9907 16 1 -2.6530 6.7032 -3.6222 17 1 -1.5595 6.7276 -5.7865 18 7 3.8619 1.5440 -3.0809 19 7 4.8030 1.1541 -2.2971 20 6 4.3357 1.0025 -1.0804 21 7 5.0531 0.5938 0.0327 22 6 4.7181 -0.7907 0.3962 23 6 5.4859 -1.1802 1.6622 24 8 6.8871 -1.0033 1.4372 25 6 7.2490 0.3338 1.0817 26 1 6.9818 1.0111 1.8929 27 6 8.7566 0.4059 0.8317 28 6 6.4989 0.7387 -0.1901 29 1 -0.5401 -0.9354 -0.0004 30 1 -0.5401 0.9353 0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 1.3599 2.1308 -0.1063 33 1 2.6078 1.4103 0.9385 34 1 1.3059 1.6976 -3.9915 35 1 0.6134 1.6867 -2.3519 36 1 0.6630 3.7959 -1.0992 37 1 0.3851 7.2258 -3.4403 38 1 3.6468 -0.8693 0.5816 39 1 4.9965 -1.4586 -0.4190 40 1 5.1675 -0.5470 2.4903 41 1 5.2842 -2.2238 1.9036 42 1 9.0229 -0.2703 0.0194 43 1 9.0318 1.4253 0.5613 44 1 9.2893 0.1141 1.7368 45 1 6.8064 0.0951 -1.0144 46 1 6.7277 1.7764 -0.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355961276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:02 Heat of formation + Delta-G solvation = -7.522696 kcal Electronic energy + Delta-G solvation = -28452.460682 eV Core-core repulsion = 24571.625542 eV Total energy + Delta-G solvation = -3880.835140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.05786 -40.79513 -38.18486 -37.33975 -36.77955 -34.27469 -33.91102 -33.72133 -32.94308 -30.47865 -29.10885 -27.88912 -27.13925 -26.90973 -24.19914 -23.61389 -22.49011 -21.99195 -21.24571 -20.74324 -19.23338 -18.47884 -17.67441 -17.54747 -17.23118 -16.68167 -16.48022 -16.37588 -16.29724 -15.75800 -15.65062 -15.42860 -15.25350 -14.88552 -14.54836 -14.51271 -13.75371 -13.48177 -13.28787 -13.21584 -13.05071 -12.91207 -12.74967 -12.72935 -12.63718 -12.54448 -12.41247 -12.21311 -12.01448 -11.81617 -11.56729 -11.30579 -11.16799 -10.86142 -10.72296 -10.59841 -10.52962 -10.22530 -9.43985 -8.13472 -6.40117 0.72067 0.89094 1.42291 1.44810 1.51123 1.56410 1.76689 2.40178 2.51899 2.72203 3.13173 3.38638 3.63182 3.68710 3.70613 3.78508 3.83500 3.94214 4.02393 4.09922 4.15383 4.22478 4.28297 4.39386 4.45353 4.52432 4.58111 4.61371 4.67064 4.74384 4.78691 4.87173 4.91888 4.96447 5.01508 5.07087 5.26502 5.40698 5.49263 5.56740 5.62094 5.65304 5.70357 6.01464 6.11283 6.13846 6.72099 7.32341 7.50263 7.70957 8.91504 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003257 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.982324 B = 8594.869723 C = 9318.868385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.200 4.200 3 C 0.133 3.867 4 N -0.456 5.456 5 C 0.214 3.786 6 C -0.044 4.044 7 C 0.244 3.756 8 H 0.010 0.990 9 O -0.574 6.574 10 C -0.580 4.580 11 H 0.072 0.928 12 C 0.025 3.975 13 N -0.902 5.902 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.278 1.278 17 H -0.286 1.286 18 N -0.339 5.339 19 N -0.357 5.357 20 C 0.341 3.659 21 N -0.447 5.447 22 C 0.017 3.983 23 C 0.071 3.929 24 O -0.392 6.392 25 C 0.096 3.904 26 H 0.079 0.921 27 C -0.141 4.141 28 C 0.043 3.957 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.355 0.645 37 H 0.260 0.740 38 H 0.104 0.896 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.131 0.869 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -16.695 15.127 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.219 4.219 3 C 0.012 3.988 4 N -0.148 5.148 5 C -0.055 4.055 6 C -0.084 4.084 7 C 0.186 3.814 8 H 0.028 0.972 9 O -0.379 6.379 10 C -0.617 4.617 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.539 5.539 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.204 1.204 17 H -0.212 1.212 18 N -0.178 5.178 19 N -0.201 5.201 20 C -0.016 4.016 21 N -0.173 5.173 22 C -0.110 4.110 23 C -0.006 4.006 24 O -0.311 6.311 25 C 0.038 3.962 26 H 0.096 0.904 27 C -0.199 4.199 28 C -0.085 4.085 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.149 0.851 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.314 -16.051 14.203 22.343 hybrid contribution -1.853 0.338 -0.341 1.915 sum 4.461 -15.713 13.862 21.423 Atomic orbital electron populations 1.24258 0.95054 1.04020 0.94292 1.22986 0.96767 0.96716 1.05392 1.21243 0.91455 0.98603 0.87508 1.46240 1.08541 1.50102 1.09930 1.25134 0.98870 1.00316 0.81190 1.20887 0.87029 0.98893 1.01604 1.19068 0.95286 0.85949 0.81135 0.97245 1.86603 1.51777 1.75703 1.23791 1.21994 1.05389 0.92681 1.41660 0.90962 1.25935 1.00088 0.96929 0.94769 1.70252 1.37261 1.01032 1.45308 0.85463 0.79327 0.78594 0.77895 1.18030 1.20415 1.21246 1.73888 0.97169 1.19850 1.26900 1.74385 1.24724 1.22119 0.98829 1.22648 0.83729 1.03345 0.91892 1.59035 1.07257 1.23735 1.27243 1.23211 1.03157 0.84978 0.99678 1.22834 0.79612 1.04024 0.94144 1.87996 1.24443 1.29175 1.89467 1.22266 0.95973 0.84047 0.93885 0.90353 1.21751 0.91337 1.03393 1.03391 1.22807 0.83440 1.02878 0.99358 0.85662 0.87254 0.86465 0.87919 0.86591 0.88903 0.88063 0.79956 0.93078 0.87795 0.94111 0.90548 0.85081 0.92168 0.89755 0.90010 0.93361 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 14.32 67.79 0.97 -1.15 16 2 C -0.20 -3.66 9.29 25.65 0.24 -3.42 16 3 C 0.13 3.18 5.78 85.63 0.50 3.68 16 4 N -0.46 -15.15 2.79 -518.91 -1.45 -16.60 16 5 C 0.21 8.69 7.07 137.64 0.97 9.67 16 6 C -0.04 -1.75 5.22 29.85 0.16 -1.59 16 7 C 0.24 12.24 2.82 29.84 0.08 12.32 16 8 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 9 O -0.57 -28.12 12.03 -148.98 -1.79 -29.91 16 10 C -0.58 -30.23 8.76 25.60 0.22 -30.00 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.03 1.37 5.40 84.66 0.46 1.83 16 13 N -0.90 -53.48 12.84 21.45 0.28 -53.20 16 14 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 15 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 18 N -0.34 -15.70 12.18 -49.53 -0.60 -16.30 16 19 N -0.36 -15.16 11.39 -58.00 -0.66 -15.82 16 20 C 0.34 11.88 6.94 260.11 1.80 13.68 16 21 N -0.45 -11.89 4.70 -705.06 -3.31 -15.20 16 22 C 0.02 0.33 5.58 86.31 0.48 0.82 16 23 C 0.07 1.04 7.01 72.01 0.50 1.55 16 24 O -0.39 -7.63 10.47 -148.98 -1.56 -9.18 16 25 C 0.10 1.83 3.42 30.63 0.10 1.94 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 C -0.14 -2.16 9.57 71.98 0.69 -1.47 16 28 C 0.04 1.09 4.39 86.32 0.38 1.47 16 29 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.11 1.67 7.85 -2.91 -0.02 1.65 16 31 H 0.12 1.97 6.51 -2.91 -0.02 1.95 16 32 H 0.10 2.56 6.16 -2.39 -0.01 2.55 16 33 H 0.12 2.44 8.09 -2.39 -0.02 2.42 16 34 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.10 3.34 7.85 -2.39 -0.02 3.33 16 36 H 0.36 14.35 7.94 -74.06 -0.59 13.77 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.10 1.77 5.40 -2.38 -0.01 1.75 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.01 376.16 0.88 -74.13 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.40 Total: 28.82 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 7.56 Total: 9.31 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -5.75 Total: -117.14 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -3.35 Total: -39.10 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.01 0.88 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.608 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds